These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 790 fasta sequence [CATAGTCCCCAGGAGCTCTCCGACCTCCTCCTGTACCCTCCCCGGTGTCCTCAGAAGGCTCCTGTGACATCTGCTTCACCTCGTTCTAACGGAACTTTAAAGAAGAAAAATGACCACAGAGATCCCGGAGGTTTTCCGCTGTCTTCTTGAGCATCCCTTCACTCTCCCTAACTTTGACTTTGATGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGGTGGCCCTGCTCCACTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTTGCAGCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACCACCAAAGCCATTCAGCCTGATGATATCCAAAACAACTCTAACTATGAGCCCGACCCCACCGAACTGGTGCTGGCAAGGGTGCTGGAAGGGGATTTTTTGACCCCCCGAAGCATAATTTTCAAACAGGACCTTAAACACAGCCCTTGATTAAAAAGCAAAAAAGGGTTTTGGCTTGAAAAAAAAAGGATTGCAATTTTGGGGAAAAGGAAAAAAAAAAATGGGTGGCAAACGTCC] [+] EMBL CA591227 [CATAGTTCCCAGGAGCTCTCCGACCTCCTCCTGTACCCTCCCCGGTG CTTCTGACGGCTCCTGTGACATCTGCTTCACCTCGTTCTAACGGAACTTTAAAGAAGAAAAATGACCACAGAGATCCCGGAGGTTTTCCGCTGTCTTCTTGAGCATCCCTTCACTCTCCCTAACTTTGACTTTGATGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGCAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGGTGG ] [+] EMBL CA846239 [ TAGTCCTTAGGAGCTCTCCGACCTCCTCCTGTACCCTCCCCGGTGTCCTCAGAAGACTCCTGTGACATCTGCTTCACCTCGTTCTAACGGAACTTTAAAGAAGAAAAATGACCACAGAGATCCCGGAGGTTTTCCGCTGTCTTCTTGAGCATCCCTTCACTCTCCCTAACTTTGACTTTGATGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGAAAGTGATTTCAAGACAGAAGAATCAAAGTCGGCTCCGGTGGCCCTGCTCCACTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTTGCAGCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACCACCAAAGCCATTCAGCCTGATGATATCCAAAACAACTCTAACTATGAGCCCGACCCCACCGAACTGGTGCTGGCAAGGGTGCTGGAAGGGGATTTTTTGACCCCCCGAAGCATAATTTTCAAACAGGACCTTAAACACAGCCCTTGATTAAAAAGCAAAAAAGGGTTTTGGCTTGAAAAAAAAAGGATTGCAATTTTGGGGAAAAGGAAAAAAAAAAATGGGTGGCAAACGTCC] consensusID : consensus_2431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 647 fasta sequence [TTCCGAACGGACTAAACGATCTTCCAGCTAAACAGGACCGGGAGAAAATAATAGCTGCGTCGCCCGCTTGGTTGTCGATTAGGAGAAAACAACAGGAGGAAAATATGTCGGAAGAATCAATTCTCATCACACTGTCAACAACGCCGGGAGGGCCCTCTTCATTCCCCGTGGTTTTGAAGAAAGTCATGGAA-TTGCCCCCTCCAAACATCCTGGACGGCGACGACGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGGTGGCCCTGCTCCCCTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTGCCAGCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACACCAGAGCCCATCAGTCCTGATGATATCGAAATCACTCTAAACTATGAGCCC] [+] EMBL FR0058302 [TTCCGAACGGACTTAACGATCTTCCAGCTAAACAGGACGGGGAGAAAATAATAGCTGCGTCGCCCGCTTGGTTGTCGATTAGGAGAAAACAACAGGAGGAAAATATGTCGGAAGAATCAATTCTCATCACACTGTCAACAACGCCGGGAGGGCCCTCTTCATTCCCCGTGGTTTTGAAGAAAGTCATGGAATTTGCCCCCTCCAAACATCCTGGACGGCGACGACGACACCAACAAGGAAAAACATGGAGATGGCGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGACGCCTTGACCCCAGCTATTTGTGACAAAACCATTCCCTATGAAGGGGAGAACTTTCACTTGGGG ] [+] EMBL BU808189 [ CGGACTAAACGATCTTCCAGCTAAACAGGACCGGGAGAAAATAATAGCTGCGTCGCCCGCTTGGTTGTCGATTAGGAGAAAACAACAGGAGGAAAATATGTCGGAAGAATCAATTCTCATCACACTGTCAACAACGCCGGGAGGGCCCTCTTCATTCCCCGTGGTTTTGAAGAAAGTCATGGAA TTGCCCCCTCCAAACATCCTGGACGGCGACGACGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGGTGGCCCTGCTCCCCTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTGCCAGCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACACCAGAGCCCATCAGTCCTGATGATATCGAAATCACTCTAAACTATGAGCCC] [+] EMBL BU806401 [ CGGACTAAACGATCTTCCAGCTAAACAGGACCGGGAGAAAATAATAGCTGCGTCGCCCGCTTGGTTGTCGATTAGGAGAAAACAACAGGAGGAAAATATGTCGGAAGAATCAATTCTCATCACACTGTCAACAACGCCGGGAGGGCCCTCTTCATTCCCCGTGGTTTTGAAGAAAGTCATGGAA TTGCCCCCTCCAAACATCCTGGACGGCGACGACGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGGTGGCCCTGCTCCCCTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTGCCAGCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACACCAGAGCCCATCAGTCCTGATGATATCGAAATCACTCTAAACTAT ] [+] EMBL CA589409 [ AGCTAAACAGGACCGGTAG AAATAATAGCTGCGTCGCCCGCTTGGTTGTCGATTAGGAGAAAACAACAGGAGGAAAATATGTCGGAAGAATCAATTCTCATCACACTGTCAACAACGCCGGGAGGGCCCTCTTCATTCCCCGTGGTTTTGAAGAAAGTCATGGAA TTGCCCCCTCCAAACATCCTGGACGGCGACGACGACACCAACAAGGAAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCTTGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGTACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGCCCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGGTGGCCCTGCTCCCCTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTGCCAGCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACACCAGAGCCCATCAGTCCTGATGATATCGAAATCACTCTAAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2431#0 ---------------------------------------CATAGTCCCCAGGAGCTCTCC 21 consensus_2431#1 TTCCGAACGGACTAAACGATCTTCCAGCTAAACAGGACCGGGAGAAAATAATAGCTGCGT 60 ** * **** consensus_2431#0 GACCTCCTC--CTGTACCCTCCCCGGTGTCCTCAGAAGGCTCCTGTGACATCTGCTTCAC 79 consensus_2431#1 CGCCCGCTTGGTTGTCGATTAGGAGAAAACAACAGGAGGAAAATATGTCGGAAGAATCAA 120 ** ** *** * * * *** *** * ** * * *** consensus_2431#0 CTCGTTCTAACGGAACTTTAAAGAAGAAAAATGACCACAGAGATCCCGGAGGTTTTCCGC 139 consensus_2431#1 TTC-TCATCACACTGTCAACAACGCCGGGAGGGCCCTCTTCATTCCCCGTGGTTTTGAAG 179 ** * * ** ** * * ** * **** * ****** consensus_2431#0 TGTCTTCTTGAGCA--TCCCTTCACTCTCCCTAACTTTGACTTTGATGACACCAACAAGG 197 consensus_2431#1 AAAGTCATGGAATTGCCCCCTCCAAACATCCTGGAC--GGCGACGACGACACCAACAAGG 237 * * ** **** ** * *** * * ** ************* consensus_2431#0 AAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCT 257 consensus_2431#1 AAAAACATGGAGATGGTGATGACCTTGGTGGAAGCAGTGATATGGGCCCCTCGGCCGCCT 297 ************************************************************ consensus_2431#0 TGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGT 317 consensus_2431#1 TGACCCCAGCTATTTGGGACAAAACCATTCCCTATGATGGTGAGAACTTCCACTTGGAGT 357 ************************************************************ consensus_2431#0 ACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGC 377 consensus_2431#1 ACATGGACCTTGAGGAGTTCCTCATCGAAAATGGCATTGCCTCTTTGCCTGGAGAGGAGC 417 ************************************************************ consensus_2431#0 CCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGG 437 consensus_2431#1 CCACAAAGGTCAGTCCAAATGAAAGTGATTCAAAGACAGAAGAATCAAAGTCGGCTCCGG 477 ************************************************************ consensus_2431#0 TGGCCCTGCTCCACTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTTGCA 497 consensus_2431#1 TGGCCCTGCTCCCCTCTGATGAATTAGATGTGTGCCAGAAGGAAGTTGTGACCATTGCCA 537 ************ ******************************************* ** consensus_2431#0 GCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGACCA 557 consensus_2431#1 GCAGTGACATCATCTGTGATGTTACGACAGAGGTGTCTACAGAGAAGGACAGAGCGAC-A 596 ********************************************************** * consensus_2431#0 CCAAAGCCATTCAG-CCTGATGATATCCAAAACAACTCTAACTATGAGCCCGACCCCACC 616 consensus_2431#1 CCAGAGCCCATCAGTCCTGATGATATCGAAATCACTCTAAACTATGAGCCC--------- 647 *** **** **** ************ *** ** ************ consensus_2431#0 GAACTGGTGCTGGCAAGGGTGCTGGAAGGGGATTTTTTGACCCCCCGAAGCATAATTTTC 676 consensus_2431#1 ------------------------------------------------------------ consensus_2431#0 AAACAGGACCTTAAACACAGCCCTTGATTAAAAAGCAAAAAAGGGTTTTGGCTTGAAAAA 736 consensus_2431#1 ------------------------------------------------------------ consensus_2431#0 AAAAGGATTGCAATTTTGGGGAAAAGGAAAAAAAAAAATGGGTGGCAAACGTCC 790 consensus_2431#1 ------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |