These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2438#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 525 fasta sequence [ATCGCTCTCACTCTCAAAGGTTTGTGACCCATTATGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGTGGGGGCTGTGGCCAAGGGGGCCACGGGGGCCACGGGGGCCACGGGTGCCACGGGGGCCACGGCCATGGGGGCCACGGCCATGGGGGCCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATCTGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA] [+] EMBL CA844867 [ATCGCTCTCACTCTCAAAGGTTTG GACCCATT TGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGTGGGGGCTGTGGCCAAGGGGGCCACGGGGGCCACGGGGGCCACGGGTGCCACGGGGGCCACGGCCATGGGGGCCACGGCCATGGGGGCTACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCA ] [+] EMBL CA846904 [ CTCTCACTCTCAAAGGTTTGTGACCCATTAAGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGTGGGGGCTGTGGCCAAGGGGGCCACGGGGGCCACGGGGGCCACGGGTGCCACGGGGGCCACGGCCATGGGGGCCACGGCCATGGGGGCCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTATATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGACCAAAATCTGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGG ] [+] EMBL CA846901 [ caTTTGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGTGGGGGCTGTGGCCAAGGGGGCCACGGGGGCCACGGGGGCCACGGGTGCCACGGGGGCCACGGCCATGGGGGCCACGGCCATGGGGGCCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAATACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCC ] [+] EMBL CA846588 [ GGGGCCACGGGGGCCAC GGGGGCCACGGCCATGGGGGCCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATCTGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA] consensusID : consensus_2438#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 437 fasta sequence [AGAGTTCATCGCTCTCACTCTCAAAGGTTTGGACCCATTTGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATCTGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA] [+] EMBL CA844870 [AGAGTTCATCGCTCTCACTCTCAAAGGTTTGGACCCATTTGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATCTGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA] [+] EMBL CA844915 [AGAGTTCATCGCTCTCACTCTCAAAGGTTTGGACCCATTTGAAATCTGAACATCTCAACTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTGCCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCACAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTCAGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCATCTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATCTGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2438#0 -------ATCGCTCTCACTCTCAAAGGTTTGTGACCCATTATGAAATCTGAACATCTCAA 53 consensus_2438#1 AGAGTTCATCGCTCTCACTCTCAAAGGTTTG-GACCCATT-TGAAATCTGAACATCTCAA 58 ************************ ******** ******************* consensus_2438#0 CTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGGTGGGGGCTGTGG 113 consensus_2438#1 CTTTGTCTCCAGCTTCAGGAGCTGAAGTTCTGAGATGTTTCGTCACGG------------ 106 ************************************************ consensus_2438#0 CCAAGGGGGCCACGGGGGCCACGGGGGCCACGGGTGCCACGGGGGCCACGGCCATGGGGG 173 consensus_2438#1 ------------------------------------------------------------ consensus_2438#0 CCACGGCCATGGGGGCCACGGGGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTG 233 consensus_2438#1 ---------------------GGGCCACGGGTGCGGGTCTGGACCTGGACCTGGACCCTG 145 *************************************** consensus_2438#0 CCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCA 293 consensus_2438#1 CCATGGGGGACCCAAGCGCAGGAGAAGGAACAAGAGAGGCCACAAGCACAGGAAGTGTCA 205 ************************************************************ consensus_2438#0 CAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTC 353 consensus_2438#1 CAAGAAGGGGAAGGACTGTCATGGGTCATCCAGCAGCTCCTGCAGCAGCAGCAGCGACTC 265 ************************************************************ consensus_2438#0 AGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCAT 413 consensus_2438#1 AGACTAGATGAAGCCCGGTTGAAGGGAGCAGAACCAGAACACCTGGACGCCTTCCTTCAT 325 ************************************************************ consensus_2438#0 CTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATC 473 consensus_2438#1 CTGCCGACCTTTTTCTTCATTTTGTCCTAAAAGCCCATAACATGTTCTTGGTCCAAAATC 385 ************************************************************ consensus_2438#0 TGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA 525 consensus_2438#1 TGTAAAACATTCATTTTATCTGATTGTGTATGACCTTGGATTAAACGAGAGA 437 **************************************************** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |