These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 653 fasta sequence [ACTGCGCCAGAGGAGGAAGTGCGCGGGTTCTCCGTCTGCGCGTCCTGACTTCCTCCGAGGCAGCGGACAGAACCCCCTTCAGACGGCGGCGGCAGCAGCAACGACATGGAGCCCCCGTCGTAACGAACTCGCACTGCTGTAAAACGCAAACATACAGTTCCGAGCGGAGAGAAACGAAAGAGCGGCGGCCGTCCGACAGAGGGATCGCCCCTGCCTGGTGGCCTCCTCCCATCATGGAGAGCTCCATCACACTCTGGCAGTTCCTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAGAGGTGGCGAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACGACAAGAACATCGTCAAGAAGGTGATCGGGAAGAAGTTTGTCTACAAGTTCGTGTCGTTCCCTGACATCCTGAAGATGGATCCCGCGCTGGTGGAGTCGGGCCGCTGCGGCGAGGAGGGCGTCTCCGCGTCCGGGGCCGAGGATGCGGGCGTGAGGACCCAGTACCTCCAGTCCGGCTTGTACTCCTCCTTCACCGTCAGCTCCCTGCAGCAACACCGG] [+] EMBL BU805607 [ACTGCGCCAGAGGAGGAAGTGCGCGGGTTCTCCGTCTGCGCGTCCTGACTTCCTCCGAGGCAGCGGACAGAACCCCCTTCAGACGGCGGCGGCAGCAGCAACGACATGGAGCCCCCGTCGTAACGAACTCGCACTGCTGTAAAACGCAAACATACAGTTCCGAGCGGAGAGAAACGAAAGAGCGGCGGCCGTCCGACAGAGGGATCGCCCCTGCCTGGTGGCCTCCTCCCATCATGGAGAGCTCCATCACACTCTGGCAGTTCCTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAGAGGTGGCGAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACGACAAGAACATCGTCAAGAAGGTGATCGGGAAGAAGTTTGTCTACAAGTTCGTGTCGTTCCCTGACATCCTGAAGATGGATCCCGCGCTG ] [+] EMBL CA333343 [ CGCCAGAGGAGGAAGTGCGCGGGTTCTCCGTCTGCGCGTCCTGCCTTCCTCCGAGGCAGCGGACAGAACCCCCTTCAGACGGCGGCGGCAGCAGCAACGACATGGAGCTCCCGTCGTAACGAACTCGCACTGCTGTAAAACGCAAACATACAGTTCCGAGCGGAGAGAAACGAAAGAGCGGCGGCCGTCCGACAGAGGGATCGCCCCTGCCTGGTGGCCTCCTCCCATCATGGAGAGCTCCATCACACTCTGGCAGTTCCTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAGAGGTGGCGAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACGACAAGAACATCGTCAAGAAGGTGATCGGGAAGAAGTTTGTCTACAAGTTCGTGTCGTTCCCTGACATCCTGAAGATGGATCCCGCGCTGGTGGAGTCGGGCCGCTGCGGCGAGGAGGGCGTCTCCGCGTCCGGGGCCGAGGATGCGGGCGTGAGGACCCAGTACCTCCAGTCCGGCTTGTACTCCTCC ] [+] EMBL CA590096 [ CCCCGTCGTAACGAACTCGCACTGCTGTAAAACGCAAACATACAGTTCCGAGCGGAGAGAAACGAAAGAGCGGCGGCCGTCCGACAGAGGGATCGCCCCTGCCTGGTGGCCTCCTCCCATCATGGAGAGCTCCATCACACTCTGGCAGTTCCTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAGAGGTGGCGAAGCTGTGGGGGCTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACGACAAGAACATCGTCAAGAAGGTGATCGGGAAGAAGTTTGTCTACAAGTTCGTGTCGTTCCCTGATATCCTGAAGATGGATCCCGCGCTGGTGGAGTCGGGCCGCTGCGGCGAGGAGGGCGTCTCCGCGTCCGGGGCCGAGGATGCGGGCGTGAGGACCCAGTACCTCCAGTCCGGCTTGTACTCCTCCTTCACCGTCAGCTCCCTGCAGCAACACCGG] consensusID : consensus_2440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [CGTGAAGTTTGACGAAAGGGGGGAACCAAAAAAAAATCAATAAAAAATTTAACCGAGTCAGAATTCGCAGGGCTGCAGGTATGGACAGCGCCATCACTCTGTGGCAGTTCCTGCTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTGATCTGCTGGACGTCCACAGACGGGGAGTTCAAGCTCCTCAAGTCGGAGGAAGTGGCCAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACGACAAGAACATCATCAAGAAGGTGATCGGCCAAAAGTTCGTCTATAAGTTCGTCTCCTTTCCTGAGATCTTGAAGATGGACCCCCAGGCGGNGGAGATGGGCCTGGCGTCAG] [+] EMBL FR0063041 [CGTGAAGTTTGACGAAAGGGGGGAACCAAAAAAAAATCAATAAAAAATTTAACCGAGTCAGAATTCGCAGGGCTGCAGGTATGGACAGCGCCATCACTCTGTGGCAGTTCCTGCTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTGATCTGCTGGACGTCCACAGACGGGGAGTTCAAGCTCCTCAAGTCGGAGGAAGTGGCCAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACGACAAGAACATCATCAAGAAGGTGATCGGCCAAAAGTTCGTCTATAAGTTCGTCTCCTTTCCTGAGATCTTGAAGATGGACCCCCAGGCGGNGGAGATGGGCCTGGCGTCAG] consensusID : consensus_2440#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [TAAAACGCAAACATACAGTCCGAGCGGGAGAGACAAGACGCGCCGCCGACATAACATCGCCCCTGCCTGGAGGCCTCCTCCCATCATGGAGAGCTCCATCACACTCTGGCAGTTCCTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAGAGGTGGCGAAGCTGTGGAGGCTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACCACAAGAACATCGG] [+] EMBL FR0059612 [TAAAACGCAAACATACAGTCCGAGCGGGAGAGACAAGACGCGCCGCCGACATAACATCGCCCCTGCCTGGAGGCCTCCTCCCATCATGGAGAGCTCCATCACACTCTGGCAGTTCCTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAGAGGTGGCGAAGCTGTGGAGGCTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCCCTGCGCTACTACTACCACAAGAACATCGG] consensusID : consensus_2440#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [AAAACGCAAACATACAGGGGCGAGCGGAGAGAAACGAAAGAGCGCCTGCCTTCCGACAGAGGGATCGCCCCCTGCCTGGGGGCCATCCTCCCATCATGGGAGGAGGCTCCATCAACACTTCTGGCAGGATCCTTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGC] [+] EMBL FR0060620 [AAAACGCAAACATACAGGGGCGAGCGGAGAGAAACGAAAGAGCGCCTGCCTTCCGACAGAGGGATCGCCCCCTGCCTGGGGGCCATCCTCCCATCATGGGAGGAGGCTCCATCAACACTTCTGGCAGGATCCTTGTTGCAGCTGCTGCTCGACCAGAGCCACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2440#0 ACTGCGCCAGAGGAGGAAGTGCGCGGGTTCTCCGTCTGCGCGTCCTGACTTCCTCCGAGG 60 consensus_2440#3 ------------------------------------------------------------ consensus_2440#2 ------------------------------------------------------------ consensus_2440#1 ------------------------------------------------------------ consensus_2440#0 CAGCGGACAGAACCCCCTTCAGACGGCGGCGGCAGCAGCAACGACATGGAGCCCCCGTCG 120 consensus_2440#3 ------------------------------------------------------------ consensus_2440#2 ------------------------------------------------------------ consensus_2440#1 ------------------------------------------------------------ consensus_2440#0 TAACGAACTCGCACTGCTGTAAAACGCAAACATACAGTTCCGAGCGGAGAGAAACGAAAG 180 consensus_2440#3 --------------------AAAACGCAAACATACAGGGGCGAGCGGAGAGAAACGAAAG 40 consensus_2440#2 -------------------TAAAACGCAAACATACAGT-CCGAGCGG-GAGAGACAAGAC 39 consensus_2440#1 ------------------------CGTGAAGTTTGA----CGAAAGGGGGGAACCAAAAA 32 ** ** * * *** ** * ** * * * consensus_2440#0 AGCGGCGGCCGTCCGACAGAGGGATCGCCCC-TGCCTGGTGGCC-TCCTCCCATCATGGA 238 consensus_2440#3 AGCGCCTGCCTTCCGACAGAGGGATCGCCCCCTGCCTGGGGGCCATCCTCCCATCATGGG 100 consensus_2440#2 -GCGCCG-----CCGACATAAC-ATCGCCCC-TGCCTGGAGGCC-TCCTCCCATCATGGA 90 consensus_2440#1 AAAATCAA----TAAAAAATTTAACCGAGTCAGAATTCGCAGGG---CTGCAGGTATGGA 85 * * * * ** * * * * ** * **** consensus_2440#0 GAG---CTCCATCA-CACT-CTGGCAG--TTCCTGTTGCAGCTGCTGCTCGACCAGAGCC 291 consensus_2440#3 AGGAGGCTCCATCAACACTTCTGGCAGGATCCTTGTTGCAGCTGCTGCTCGACCAGAGCC 160 consensus_2440#2 GAG---CTCCATCA-CACT-CTGGCAG--TTCCTGTTGCAGCTGCTGCTCGACCAGAGCC 143 consensus_2440#1 CAG---CGCCATCA-CTCT-GTGGCAG--TTCCTGCTGCAGCTGCTGCTCGACCAGAGCC 138 * * ****** * ** ****** * * ** ************************ consensus_2440#0 ACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAG 351 consensus_2440#3 ACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGC--------------- 205 consensus_2440#2 ACAAGCACCTCATCTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAGTCTGAAG 203 consensus_2440#1 ACAAGCACCTGATCTGCTGGACGTCCACAGACGGGGAGTTCAAGCTCCTCAAGTCGGAGG 198 ********** **************** ***** ********** consensus_2440#0 AGGTGGCGAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGA 411 consensus_2440#3 ------------------------------------------------------------ consensus_2440#2 AGGTGGCGAAGCTGTGGAGGCTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGA 263 consensus_2440#1 AAGTGGCCAAGCTGTGGGGGTTGCGCAAGAACAAGACCAACATGAACTACGACAAGCTGA 258 consensus_2440#0 GCAGAGCCCTGCGCTACTACTACGACAAGAACATCGTCAAGAAGGTGATCGGGAAGAAGT 471 consensus_2440#3 ------------------------------------------------------------ consensus_2440#2 GCAGAGCCCTGCGCTACTACTACCACAAGAACATCGG----------------------- 300 consensus_2440#1 GCAGAGCCCTGCGCTACTACTACGACAAGAACATCATCAAGAAGGTGATCGGCCAAAAGT 318 consensus_2440#0 TTGTCTACAAGTTCGTGTCGTTCCCTGACATCCTGAAGATGGATCCCGCGCTGGTGGAGT 531 consensus_2440#3 ------------------------------------------------------------ consensus_2440#2 ------------------------------------------------------------ consensus_2440#1 TCGTCTATAAGTTCGTCTCCTTTCCTGAGATCTTGAAGATGGACCCCCAGGCGGNGGAGA 378 consensus_2440#0 CGGGCCGCTGCGGCGAGGAGGGCGTCTCCGCGTCCGGGGCCGAGGATGCGGGCGTGAGGA 591 consensus_2440#3 ------------------------------------------------------------ consensus_2440#2 ------------------------------------------------------------ consensus_2440#1 TGGGCCTGGCGTCAG--------------------------------------------- 393 consensus_2440#0 CCCAGTACCTCCAGTCCGGCTTGTACTCCTCCTTCACCGTCAGCTCCCTGCAGCAACACC 651 consensus_2440#3 ------------------------------------------------------------ consensus_2440#2 ------------------------------------------------------------ consensus_2440#1 ------------------------------------------------------------ consensus_2440#0 GG 653 consensus_2440#3 -- consensus_2440#2 -- consensus_2440#1 -- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |