These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 958 fasta sequence [CTAAAGAACAGAGAGGGAGACCTCTGGTGGATAGAAACGAAACTGCAGGGTGGCCAAGTTCTTGTTTGAAGTAGTTTCTTGCAGATATTTAACTCTCAATTGCTTCTAATTGTTGCTCACAGATTAAGTACCATGAGGATATGAGCAAGAGGATGGTGGACGATACTCCACCACCAGGCATCCACAACCAAGCTGATTTTCAGCCACCTGCCAGTTCCCAGACCTACCAATATGATCCTGCTCCTGCACCAGTGCCCCAGCCATATGAGCCTGCTCCTGCACCAGTGCCCCAGGCCGGCGCCCCCCCTCCTTCCTCCACCGGGAAACGCTGCCGGGCCATGTACGACTACACCGCCGCCGACGACGACGAGGTGTCCTTCTTGGACGGGGACGTGATTGTGGATGTGCACCTGATTGACGAGGGCTGGATGTTCGGCCGCGTGGAGCGTACGGGCCAGCAGGGCATGCTGCCTGCTAATTACGTGAATAACATCTGAGTGAGAGAGAGAGAAAGAAAAGGGGGAAGGGAGGAGGAGGGAAAGAAAGAAAAGCCCAGTGCCATCTCATCTTAATGCCGCTTTATCGATTTTACTCCTGTTCCCTAATTTGTCCTGTGATATCCTGACACCACCACCTGTTCACTTTCGCGATTGCTGTGAAGCTCCACCTCAGACACCCTCCACTCGTCCGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCAGTAAAAAAGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCCGCCTCCCTTCCTGCCATCTGTCCGTGCCGACGCCCGTCGTCCTTTTTGTTTCTCCCCATCCTGGCTCGGTTTTAATCGAATTGGAAAGCAAATTTCAGCTCAGCATGTCCAGACTCCCCCATCATGACACAAGCCTCCATCCCGGCCGAGGCACGTAACCAGGGTGATATAACATCGCGCAAAAT] [+] EMBL CA333081 [CTAAAGAACAGAGAGGGAGACCTCTGGTGGATAGAAACGAAACTGCAGGGTGGCCAAGTTCTTGTTTGAAGTAGTTTCTTGCAGATATTTAACTCTCAATTGCTTCTAATTGTTGCTCACAGATTAAGTACCATGAGGATATGAGCAAGAGGATGGTGGACGATACTCCACCACCAGGCATCCACAACCAAGCTGATTTTCAGCCACCTGCCAGTTCCCAGACCTACCAATATGATCCTGCTCCTGCACCAGTGCCCCAGCCATATGAGCCTGCTCCTGCACCAGTGCCCCAGGCCGGCGCCCCCCCTCCTTCCTCCACCGGGAAACGCTGCCGGGCCATGTACGACTACACCGCCGCCGACGACGACGAGGTGTCCTTCTTGGACGGGGACGTGATTGTGGATGTGCACCTGATTGACGAGGGCTGGATGTTTGGCCGCGTGGAGCGTACGGGCCAGCAGGGCATGCTGCCTGCTAATTACGTGAATAACATCTGAGTGAGAGAGAGAGAAAGAAAAGGGGGAAGGG ] [-] EMBL CA332377 [ TACACCCCCCCCGACGACGACGAGGTGTCCTTCTTGGACGGGGACGTGATTGTGGATGTGCACCTGATTGACGAGGGCTGGATGTTCGGCCGCGTGGAGCGTACGGGCCAGCAGGGCATGCTGCCTGCTAATTACGTGAATAACATCTGAGTGAGAGAGAGAGAAAGAAAAGGGGGAAGGGAGGAGGAGGGAAAGAAAGAAAAGCCCAGTGCCATCTCATCTTAATGCCGCTTTATCGATTTTACTCCTGTTCCCTAATTTGTCCTGTGATATCCTGACACCACCACCTGTTCACTTTCGCGATTGCTGTGAAGCTCCACCTCAGACACCCTCCACTCGTCCGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCAGTAAAAAAGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCCGCCTCCCTTCCTGCCATCTGTCCGTGCCGACGCCCGTCGTCCTTTTTGTTTCTCCCCATCCTGGCTCGGTTTTAATCGAATTGGAAAGCAAATTTCAGCTCAGCATGTCCAGACTCCCCCATCATGACACAAGCCTCCATCCCGGCCGAGGCACGTAACCAGGGTGATATAACATCGCGCAAAAT] consensusID : consensus_2446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 614 fasta sequence [GGCGGCTACAACAATAACCCTCTCCTGGATTTGCTCCACACATGCCACTGGGCACGATCGGCGACCGTAGCTAGTGCGTGTGCGCGTGTTTTTATTTCCGAAGTGGGCAAAACTGCGACCAGAACGTCCAACGGTTTC-CCCGCAAGCTAGCCCGAAGAGCATTCCTCCGACATGAATCCGAAGTGTAGCAGATGTGATCGAATCGTTTACCCCACGGAAAGACTGAATTGTCTGGACAAGTGCTGGCATAGAGGATGCTTCAGCTGCGAGGTCTGCAAGATGACTCTAAACATGAAGAATTACAAAGGATTTGAAAAGAGACCATACTGCAATGCACAC-TACCCCAAGACACATTTCACTGCTGTGGCCGACACTCCAGAGAACCTCCGACTCAAAAAGCAGAGCCAGATCCAGAGCCAAATTTACTACAAGGAGGACTTTGAGAAGAATAAAGGGAAAGCCACCCA-GGGCGTGGACACACCGGGGGTCCTGAGATTGAAGAAGTCGCAGCAACAAATCAGCGATATTAAGTACCATGAGGATATGAGCAAGAGGATGGTGGACGATACTCCACCACCAGGCATCCACAACCAAGCTGATTTTCAGCCACCTGC] [+] EMBL CA590842 [GGCGGCTACAACAATAACCCTCTCCTGGATTTGCTCCACACATGCCACTGGGCACGATCGGCGACCGTAGCTAGTGCGTGTGCGCGTGTTTTTATTTCCGAAGTGGGCAAAACTGCGACCAGAACGTCCAACGGTTTC CCCGCAAGCTAGCCCGAAGAGCATTCCTCCGACATGAATCCGAAGTGTAGCAGATGTGATCGAATCGTTTACCCCACGGAAAGACTGAATTGTCTGGACAAGTGCTGGCATAGAGGATGCTTCAGCTGCGAGGTCTGCAAGATGACTCTAAACATGAAGAATTACAAAGGATTTGAAAAGAGACCATACTGCAATGCACAC TACCCCAAGACACATTTCACTGCTGTGGCCGACACTCCAGAGAACCTCCGACTCAAAAAGCAGAGCCAGATCCAGAGCCAAATTTACTACAAGGAGGACTTTGAG ] [+] EMBL CA589138 [ GCGACCGTAGCTAGTGCGTGTGCGCGTGTTTTTATTTCCGAAGTGGGCAAAACTGCGACCAGAACGTCCAACGGTTTC CCCGCAAGCTAGCCCGAAGAGCATTCCTCCGACATGAATCCGAAGTGTAGCAGATGTGATCGAATCGTTTACCCCACGGAAAGACTGAATTGTCTGGACTATTGCTGGCATAGAGGATGCTTCAGCTGCGAGGTCTGCAAGATGACTCTAAACATGAAGAATTACAAAGGATTTGAAAAGAGACCATACTGCAATGCACAC TACCCCAAGACACATTTCACTGCTGTGGCCGACACTCCAGAGAACCTCCGACTCAAAAAGCAGAGCCAGATCCAGAGCCAAATTTACTACAAGGAGGACTTTGAGAAGAATAAAGGGAAAGCCACCCA GGTCGTGGACACACCGGAGTTCCTGAGATTGAAGAAGTCGCAGCAACAAATCAGCGATATTAAGTACCATGAGGATATGAGCAAGAGGATGGTGGACGATACTCCACCACCAGGCATCCACAACCAAGCTGATTTTCAGCCACCTGC] [+] EMBL FR0062499 [ TGGGCAATTTTGCGACCAGAACGTCCAACGGTTTCGGGCGGGAGCTAGCCCGAAGAGCATTCCTCCCACATGAATCCGAAGTGTAGCAGATGTGATCGAATCGTTTACCCCACGGAAAGACTGAATTGTCTGGACAAGTGCTGGCATAGAGGATGCTTCAGCTGCGAGGGCTGCAAGATGACTCTAAACATGAAGAATTACAAAGGATTTGAAAAGAGACCATACTGCAATGCACACTTACCCCAAGACACATTTCACTGTTGTGGCCGACACTCCAGAGAACTTCCGACTCAAAAAGCAGA CCAGATCCA ] [+] EMBL FR0062061 [ GACCAGAACGTCCAGGGGTTTC CCCGCAAGCTAGCCCGAAGAGCATTCCTCCGACATGAATCCGAAGTGTAGCAGATGTGATCGAATCGTTTACCCCACGGAAAGACTGAATTGTCTGGACAAGTGCTGGCATAGAGGATGCTTCAGCTGCGAGGTCTGCAAGATGACTCTAAACATGAAGAATTACAAAGGATTTGAAAAGAGACCATACTGCAATGCACAC TACCCCAAGACACATTTCACTGCTGTGGCCGACACTCCAGAGAACCTCCGACTCAAAAAGCAGAGCCAGATCCAGAGCCAAATTTACTACAGGGAGGACTTTGAGAAGAATAAAGGGAAAGCCACCCAGGGGCGTGGACACACCGGGAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2446#0 CTAAAGAACAGAGAGGGAGACCTCTGGTGGATAGAAACGAAACTGCAGGGTGGCCAAGTT 60 consensus_2446#1 ------------------------------------------------------------ consensus_2446#0 CTTGTTTGAAGTAGTTTCTTGCAGATATTTAACTCTCAATTGCTTCTAATTGTTGCTCAC 120 consensus_2446#1 -------------GGCGGCTACAACAA--TAACCCTCTCCTGGATTTGCTCCACACATGC 45 * * ** * **** *** ** * * * * * consensus_2446#0 AGATTAAGTACCATGAG-GATATGAGCAAGAGGATGGTGGACGATACTCCACCACC-AGG 178 consensus_2446#1 C-ACTGGGCACGATCGGCGACCGTAGCTAGTGCGTG-TGCGCGTGTTTTTATTTCCGAAG 103 * * * ** ** * ** *** ** * ** ** ** * * ** * * consensus_2446#0 CATCCACAACCAAGCTGATTTTCAGCCACCTGCCAGTTCCCAGACCTACCAATATGATCC 238 consensus_2446#1 TGGGCAAAACTGCGACCAGAA-CGTCCAACGGTTTCCCCGCAAGCTAGCCCGAAGAGCAT 162 ** *** * * * *** * * * ** * ** * consensus_2446#0 TGCTCCTGCACCAGTGCCCCAGCCATATGAGCCTGCTCCTGCACCAGT-GCCCCAGGCCG 297 consensus_2446#1 TCCTCCGACATGAAT--CCGAAGTGTAGCAGA-TGTGATCGAATCGTTTACCCCACGGAA 219 * **** ** * * ** * ** ** ** * * * * ***** * consensus_2446#0 GCGCCCCCCCTCCTTCCTCCACCGGGAAACGCTGCCGGGCCATGTACGACTACACCGCCG 357 consensus_2446#1 AGAC----------TGAATTGTCTGGACAAG-TGCTGG--CATAGAGGA-TGCTTCAGCT 265 * * * *** * * *** ** *** * ** * * * * consensus_2446#0 CCGACGACGACGAGGTGTCCTT---CTTGGACGGGGACGT-GATTGTGGATGTGCACCTG 413 consensus_2446#1 GCGAGGTCTGCAAGATGACTCTAAACATGAAGAATTACAAAGGATTTGAAAAGAGACCAT 325 *** * * * ** ** * * * ** * ** * * ** * *** consensus_2446#0 ATTGACGAGGGCTGGATGTTCGGCCGCGTGGAGCGTACG-GGCCAGCAGGGCATGCTGCC 472 consensus_2446#1 ACTGCAATGCACACTACCCCAAGACACATTTCACTGCTGTGGCCGACACTCCAGAGAACC 385 * ** * * * * * * * * * **** ** ** ** consensus_2446#0 TGCTAATTACGTGAATAACATCTGAGTGAGAGAGAGAGAAAGAAAAGGGGGAAGGGAGGA 532 consensus_2446#1 T-CCGACTCAAAAAGCAGAGCCAGATCCAGAGCCAAATTTACTACAAGGAGGACTTTGAG 444 * * * * * * * ** **** * * * * * ** * * * consensus_2446#0 GGAGGGAAAGAAAGAAAAGCCCAGTGCCATCTCATCTTAATGCCGCTTTATCGATTTTAC 592 consensus_2446#1 AAGAATAAAGGGAAAGCCACCCAGGGCGTGGACACACCGGGGGTCCTGAGATTGAAGAAG 504 **** * * ***** ** ** * ** * consensus_2446#0 TCCTGTTCCCTAATTTGTCCTGTGATATCCTGACACCACCACCTGTTCACTTTCGCGATT 652 consensus_2446#1 TCGCAGCAACAAATCAGCGATATTAAGTAC---CATGAGGATATGAGCAAGAGGATGGTG 561 ** * *** * * * * * * ** * * ** ** * * consensus_2446#0 GCTGTGAAGCTCCACC-TCAGACACCCTCCACTCGTCCGTCTGTCTGTCTGTCTGTCTGT 711 consensus_2446#1 G--ACGATACTCCACCACCAGGCATCCACAACCAAGCTGATTTTCAG-CCACCTGC---- 614 * ** ******* *** ** ** * ** * * * ** * * *** consensus_2446#0 CTGTCTGTCTGTCTGTCAGTAAAAAAGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGT 771 consensus_2446#1 ------------------------------------------------------------ consensus_2446#0 CCGCCTCCCTTCCTGCCATCTGTCCGTGCCGACGCCCGTCGTCCTTTTTGTTTCTCCCCA 831 consensus_2446#1 ------------------------------------------------------------ consensus_2446#0 TCCTGGCTCGGTTTTAATCGAATTGGAAAGCAAATTTCAGCTCAGCATGTCCAGACTCCC 891 consensus_2446#1 ------------------------------------------------------------ consensus_2446#0 CCATCATGACACAAGCCTCCATCCCGGCCGAGGCACGTAACCAGGGTGATATAACATCGC 951 consensus_2446#1 ------------------------------------------------------------ consensus_2446#0 GCAAAAT 958 consensus_2446#1 ------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |