These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 905 fasta sequence [TTATGCTCCCCCACTTGGGCCAACTTGAACTAACATCATATGCAGATAAGATCTGGTGGGCAGGGTGGATCCTAGCATTCCTAGTTAAAATACCCCTTTACGGAGTTCACCTTTGACTACCCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAAAACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCGATTCATTGTCTTAGCCCTCTGAGGAGGGATTATAACTGGGTCCATCTGCATAGGGCAAACAGACCTAAAATCATTAATTGCCTACTCATGAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAATTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTACGAGCGCACACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAGCCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAGGAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTGGACTAGGTACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTATCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGTGAACTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAGTTTTG] [+] EMBL FR0062851 [TTATGCTCCCCCACTTGGGCCAACTTGAACTAACATCATATGCAGATAAGATCTGGTGGGCAGGGTGGATCCTAGCATTCCTAGTTAAAATACCCCTTTACGGAGTTCACCTTTGACTACCCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAAAACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCGATTCATTGTCTTAGCCCTCTGAGGAGGGATTATAACTGGGTCCATCTGCATAGCGCAAACAGACCTAAAATCATTAATTGCCTACTCATGAGTCAG ] [+] EMBL BU804550 [ AATACCCCTTTACGGAGTTCACCTTTGACTACCCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAAAACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCATACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAATTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTACGAGCGCACACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAGCCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAGGAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTGGACTAGGTACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCC ] [+] EMBL FR0056720 [ CCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAATTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTGCGAGCGCACACACAGACGATCCATACTACTTGCTCGAGGTATGCACATAATCCTCCCTCTCATATGAGCCTGATGATTCATCGCAGGCCTCGCCAATTTAGCAGTACCACCCCTCGCCAACTTAATAAGAGAACTAATGGTTAGTACCTCCCTATTCAATTGAGTCCCGTGAACAATTGGGCTTACTGGACTAGGTACACTTATTACTGCCGGCGATTCGCTCTATATATTCCTCATAATCCAACGAGGGCTGGCCCCCAGC ] [+] EMBL CA333433 [ GCTAATACTAGCTACGAGCGCACACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAGCCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAGGAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTGGACTAGGCACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTATCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGTGAACTGC ] [+] EMBL FR0058010 [ TAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTATCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGTGAACTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAGTTTTG] consensusID : consensus_2462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [GGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCATACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAAATAACAACAAAAAAAACCCCAAGGGGGGGCCCGTTCCCAAGTTTTGGG] [+] EMBL FR0057740 [GGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCATACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAAATAACAACAAAAAAAACCCCAAGGGGGGGCCCGTTCCCAAGTTTTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2462#0 TTATGCTCCCCCACTTGGGCCAACTTGAACTAACATCATATGCAGATAAGATCTGGTGGG 60 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 CAGGGTGGATCCTAGCATTCCTAGTTAAAATACCCCTTTACGGAGTTCACCTTTGACTAC 120 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 CCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAA 180 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 AACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAAC 240 consensus_2462#1 --------------GGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAAC 46 ********************************************** consensus_2462#0 TCAGCTACCGATTCATTGTCTTAGCCCTCTGAGGAGGGATTATAACTGGGTCCATCTGCA 300 consensus_2462#1 TCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCA 106 ********* ************************** ************ ********** consensus_2462#0 TAGGGCAAACAGACCTAAAATCATTAATTGCCTACTCATGAGTCAGCCACATAGGACTGG 360 consensus_2462#1 TACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGG 166 ** * ********************************** ******************** consensus_2462#0 TAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAA 420 consensus_2462#1 TAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAA 226 ************************************************************ consensus_2462#0 TTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTACGAGCGCA 480 consensus_2462#1 ATAACAACAAAA-AAAACCCCAAGGGGGGGCCCGTTCC-CAAGTTTTGGG---------- 274 * * ** * ** * * * * ** * * * * * consensus_2462#0 CACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAG 540 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 CCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAG 600 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 GAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTG 660 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 GACTAGGTACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAG 720 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 GGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTA 780 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 TCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGT 840 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 GAACTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAG 900 consensus_2462#1 ------------------------------------------------------------ consensus_2462#0 TTTTG 905 consensus_2462#1 ----- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |