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Takifugu rubripes
cluster # 2462 cluster # 2462       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2462#0 length = 905 sequences # 5  
consensus_2462#1 length = 274 sequences # 1  

consensusID : consensus_2462#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 905
fasta sequence
                              [TTATGCTCCCCCACTTGGGCCAACTTGAACTAACATCATATGCAGATAAGATCTGGTGGGCAGGGTGGATCCTAGCATTCCTAGTTAAAATACCCCTTTACGGAGTTCACCTTTGACTACCCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAAAACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCGATTCATTGTCTTAGCCCTCTGAGGAGGGATTATAACTGGGTCCATCTGCATAGGGCAAACAGACCTAAAATCATTAATTGCCTACTCATGAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAATTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTACGAGCGCACACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAGCCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAGGAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTGGACTAGGTACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTATCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGTGAACTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAGTTTTG]

[+] EMBL FR0062851            [TTATGCTCCCCCACTTGGGCCAACTTGAACTAACATCATATGCAGATAAGATCTGGTGGGCAGGGTGGATCCTAGCATTCCTAGTTAAAATACCCCTTTACGGAGTTCACCTTTGACTACCCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAAAACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCGATTCATTGTCTTAGCCCTCTGAGGAGGGATTATAACTGGGTCCATCTGCATAGCGCAAACAGACCTAAAATCATTAATTGCCTACTCATGAGTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BU804550             [                                                                                        AATACCCCTTTACGGAGTTCACCTTTGACTACCCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAAAACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCATACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAATTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTACGAGCGCACACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAGCCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAGGAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTGGACTAGGTACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCC                                                                                                                                                      ]
[+] EMBL FR0056720            [                                                                                                                                                                                                                                                                                                                                                                                                CCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAATTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTGCGAGCGCACACACAGACGATCCATACTACTTGCTCGAGGTATGCACATAATCCTCCCTCTCATATGAGCCTGATGATTCATCGCAGGCCTCGCCAATTTAGCAGTACCACCCCTCGCCAACTTAATAAGAGAACTAATGGTTAGTACCTCCCTATTCAATTGAGTCCCGTGAACAATTGGGCTTACTGGACTAGGTACACTTATTACTGCCGGCGATTCGCTCTATATATTCCTCATAATCCAACGAGGGCTGGCCCCCAGC                                                                                                                                                                           ]
[+] EMBL CA333433             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCTAATACTAGCTACGAGCGCACACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAGCCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAGGAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTGGACTAGGCACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTATCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGTGAACTGC                                                          ]
[+] EMBL FR0058010            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TAACCCAACGAGGGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTATCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGTGAACTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAGTTTTG]


>consensus_2462#0 TTATGCTCCCCCACTTGGGCCAACTTGAACTAACATCATATGCAGATAAGATCTGGTGGG CAGGGTGGATCCTAGCATTCCTAGTTAAAATACCCCTTTACGGAGTTCACCTTTGACTAC CCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAA AACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAAC TCAGCTACCGATTCATTGTCTTAGCCCTCTGAGGAGGGATTATAACTGGGTCCATCTGCA TAGGGCAAACAGACCTAAAATCATTAATTGCCTACTCATGAGTCAGCCACATAGGACTGG TAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAA TTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTACGAGCGCA CACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAG CCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAG GAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTG GACTAGGTACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAG GGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTA TCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGT GAACTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAG TTTTG



consensusID : consensus_2462#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence
                              [GGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCATACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAAATAACAACAAAAAAAACCCCAAGGGGGGGCCCGTTCCCAAGTTTTGGG]

[+] EMBL FR0057740            [GGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCATACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGGTAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAAATAACAACAAAAAAAACCCCAAGGGGGGGCCCGTTCCCAAGTTTTGGG]


>consensus_2462#1 GGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAACTCAGCTACCCATTC ATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCATACGTCAAACAGAC CTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGGTAGTTGGAGGTATT CTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAAATAACAACAAAAAA AACCCCAAGGGGGGGCCCGTTCCCAAGTTTTGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2462#0      TTATGCTCCCCCACTTGGGCCAACTTGAACTAACATCATATGCAGATAAGATCTGGTGGG 60
consensus_2462#1      ------------------------------------------------------------
                                                                                  

consensus_2462#0      CAGGGTGGATCCTAGCATTCCTAGTTAAAATACCCCTTTACGGAGTTCACCTTTGACTAC 120
consensus_2462#1      ------------------------------------------------------------
                                                                                  

consensus_2462#0      CCAAAGCTCACGTAGAAGCCCCCATTGCAGGATCTATAGTGCTAGCCGCTGTACTACTAA 180
consensus_2462#1      ------------------------------------------------------------
                                                                                  

consensus_2462#0      AACTAGGGGGCTACGGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAAC 240
consensus_2462#1      --------------GGCATAATACGAATTTTAGTCACCCTAGACCCCTTAACCAAAGAAC 46
                                    **********************************************

consensus_2462#0      TCAGCTACCGATTCATTGTCTTAGCCCTCTGAGGAGGGATTATAACTGGGTCCATCTGCA 300
consensus_2462#1      TCAGCTACCCATTCATTGTCTTAGCCCTCTGAGGAGTGATTATAACTGGTTCCATCTGCA 106
                      ********* ************************** ************ **********

consensus_2462#0      TAGGGCAAACAGACCTAAAATCATTAATTGCCTACTCATGAGTCAGCCACATAGGACTGG 360
consensus_2462#1      TACGTCAAACAGACCTAAAATCATTAATTGCCTACTCATCAGTCAGCCACATAGGACTGG 166
                      ** * ********************************** ********************

consensus_2462#0      TAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAA 420
consensus_2462#1      TAGTTGGAGGTATTCTCATCCAAACCCCCTGAGGATTCACCGGCGCGCTAATCCTCATAA 226
                      ************************************************************

consensus_2462#0      TTGCCCACGGATTAACATCATCCGCCTTATTCTGTCTAGCTAATACTAGCTACGAGCGCA 480
consensus_2462#1      ATAACAACAAAA-AAAACCCCAAGGGGGGGCCCGTTCC-CAAGTTTTGGG---------- 274
                       *  * **  *  ** * *    *       * **    * * *  * *           

consensus_2462#0      CACACAGCCGAACTATACTACTTGCTCGAGGTATGCAAATAATCCTCCCTCTCATAGCAG 540
consensus_2462#1      ------------------------------------------------------------
                                                                                  

consensus_2462#0      CCTGATGATTCATCGCAAGCCTCGCCAATTTAGCATTACCACCCCTCCCCAACTTAATAG 600
consensus_2462#1      ------------------------------------------------------------
                                                                                  

consensus_2462#0      GAGAACTAATGATTATTACCTCCCTATTCAATTGATCCCCGTGAACAATTGGCCTTACTG 660
consensus_2462#1      ------------------------------------------------------------
                                                                                  

consensus_2462#0      GACTAGGTACACTTATTACTGCCGGCTACTCGCTCTATATATTCCTCATAACCCAACGAG 720
consensus_2462#1      ------------------------------------------------------------
                                                                                  

consensus_2462#0      GGCCCGCCCCCAGCCACCTCCTAGCTCTTGAACCCTCACACACCCGAGAGCACCTTCTTA 780
consensus_2462#1      ------------------------------------------------------------
                                                                                  

consensus_2462#0      TCGCCCTCCACCTCCTCCCACTAATCCTAATTATTACAAAACCAGAACTAATCTGAGGGT 840
consensus_2462#1      ------------------------------------------------------------
                                                                                  

consensus_2462#0      GAACTGCCTAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAG 900
consensus_2462#1      ------------------------------------------------------------
                                                                                  

consensus_2462#0      TTTTG 905
consensus_2462#1      -----
                           




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)