These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 628 fasta sequence [TCTCGCAGTCATGGCTGCGCCGCCCGATGCGGAGAGTTTGGAGTCTCGTATCAACAGAGCCACAAACCCCCTCAACAGGGACACGGACTGGAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGTCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGTGGTCTCTCCCAAGTACCTGGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGTTCTGGAGTTGATCTTCAGCTGGACTGTGGCGTTACCTGATGAGGCCAAGATCTCTGATGCCTACCAGATGCTGAAGAAGCAAGGTATCATTAAACAAGACCCAGAGCTGCCGGCCGACCAGCTGCTTCCTCCACCCAGACCCAAAAACACCATTTTTGAGGATGAGGAGAAGTCAAAAATGTTGGCTCGCCTGTTGAACAGCTCTCACCCAGAAGATCTCAAAGCTGCCAACAAGCTCATCAAGGAAATGGTCCAAGAGGACCAGAAGCGGACA] [+] EMBL CA590458 [TCTCGCAGTCATGGCTGCGCCGCCCGATGCGGAGAGTTTGGAGTCTCGTATCAACAGAGCCACAAACCCCCTCAACAGGGACACGGACTGGAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGTCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGTGGTCTCTCCCAAGTACCTGGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGTTCTGGAGTTGATCTTCAGCTGGACTGTGGCGTTACCTGATGAGGCCAAGATCTCTGATGCCTACCAGATGCTGAAGAAGCAAGGTATCATTANACAAGACCCAGAGCTGCCGGCCGACCAGCTGCTTCCTCCACCCAGACCCAAAAACACCATTTTTGAGGATGAGGAGAAGTCAAAAATGTTGGCTCGCCTGTTGAACAGCTCTCACCCAGAAGATCTCANAGCTGCCAACAAGCTCATCAAGGAAATGGTCCAA ] [+] EMBL CA589439 [TCTCGCAGTCATGGCTGCGCCGCCCGATGCGGAGAGTTTGGAGTCTCGTATCAACAGAGCCACAAACCCCCTCAACAGGGACACGGACTGGAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGTCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGTGGTCTCTCCCAAGTACCTGGGCTCACGCTCACCAGAGCCTGCAAAAAAGAAGGTTCTGGAGTTGATCTTCAGCTGGACTGTGGCGTTACCTGATGAGGCCAAGATCTCTGATGCCTACCAGATGCTGAAGAAGCAAGGTATCATTAAACAAGACCCAGAGCTGCCGGNCGACCAGCTGCTTCCTCCACCCAGACCCAAAAACACCATTTTTGAGGATGAGGAGAAGTCAAGAATGTTGGCTCGCCTGTTGAACAGCTCTCACCCAGAAGATCTCCAAGCTGCCAACAAGCTCAATCAAGAAATGTTC ] [+] EMBL BU806697 [ TATCAACAGAGCCACAAACCCCCTCAACAGGGACACGGACTGGAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGTCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGTGGTCTCTCCCAAGTACCTGGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGTTCTGGAGTTGATCTTCAGCTGGACTGTGGCGTTACCTGATGAGGCCAAGATCTCTGATGCCTACCAGATGCTGAAGAAGCAAGGTATCATTAAACAAGACCCAGAGCTGCCGGCCGACCAGCTGCTTCCTCCACCCAGACCCAAAAACACCATTTTTGAGGATGAGGAGAAGTCAAAAATGTTGGCTCGCCTGTTGAACAGCTCTCACCCAGAAGATCTCAAAGCTGCCAACAAGCTCATCAAGGAAATGGTCCAAGAGGACCAGAAGCGGACA] [+] EMBL FR0061024 [ CAGGAGAACCACAAACCCCCTCAACAGACACACGTACTGGAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGCGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTCTCCACAGGAGCGGGAGGCCATGCAAGCCCTGTTGGGCCTGGAAACGTGCATGAAAAACTGGGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGGGGGCTCTCCCAAGGACCTGGGCTCACGCTCACCAGA ] [+] EMBL FR0058652 [ AACAGGGACACGGACTGGAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGTCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGGGGGCTCTCCCAAGTACCTGGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGGTCTGGGGTTGATCTTCAGCTGGACTGTGGCGGTACCTGATGAGGCC ] consensusID : consensus_2479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [ACAGGGACACGGACTGTAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGGCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGNGCAAGTTCCGCTTCTTCAATGAGCTCATCAAAGTGGTCTCTCCCAAGGACCTGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGNTCTGAGTGATCTTAGCTGACTGTGCGTACCTGATAGGCAAGACTCTGATGCTACAGATGCTGAGAGCAGATATAACAGACCAAGTGCGCGA] [+] EMBL FR0063817 [ACAGGGACACGGACTGTAGCAGCATCCATGCCTTCTGTGACCAACTCAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGCCCATAAGATTCAGTCTCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGGCCTGGAAACGTGCATGAAAAACTGTGGCAAAAGGTTTCACAACGAAGTGNGCAAGTTCCGCTTCTTCAATGAGCTCATCAAAGTGGTCTCTCCCAAGGACCTGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGNTCTGAGTGATCTTAGCTGACTGTGCGTACCTGATAGGCAAGACTCTGATGCTACAGATGCTGAGAGCAGATATAACAGACCAAGTGCGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2479#0 TCTCGCAGTCATGGCTGCGCCGCCCGATGCGGAGAGTTTGGAGTCTCGTATCAACAGAGC 60 consensus_2479#1 ------------------------------------------------------------ consensus_2479#0 CACAAACCCCCTCAACAGGGACACGGACTGGAGCAGCATCCATGCCTTCTGTGACCAACT 120 consensus_2479#1 --------------ACAGGGACACGGACTGTAGCAGCATCCATGCCTTCTGTGACCAACT 46 **************** ***************************** consensus_2479#0 CAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTGGCCCATAAGATTCAGTC 180 consensus_2479#1 CAACAGTGATTTGGAGGGGCCTCAGCTGGCCACCAGACTGCTG-CCCATAAGATTCAGTC 105 ******************************************* **************** consensus_2479#0 TCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGTCCTGGAAACGTGCATGAAAAACTG 240 consensus_2479#1 TCCACAGGAGTGGGAGGCCATGCAAGCCCTGTTGGGCCTGGAAACGTGCATGAAAAACTG 165 *********************************** ************************ consensus_2479#0 TGGCAAAAGGTTTCACAACGAAGTGGGCAAGTTCCGCTTCCTCAATGAGCTCATCAAAGT 300 consensus_2479#1 TGGCAAAAGGTTTCACAACGAAGTGNGCAAGTTCCGCTTCTTCAATGAGCTCATCAAAGT 225 ************************* ************** ******************* consensus_2479#0 GGTCTCTCCCAAGTACCTGGGCTCACGCTCACCAGAGCCTGTAAAAAAGAAGGTTCTGGA 360 consensus_2479#1 GGTCTCTCCCAAGGACCTGG-CTCACGCTCACCAGAGCCTGTAAAAAAGAAGGNTCTGAG 284 ************* ****** ******************************** **** consensus_2479#0 GTTGATCTTCAGCTGGACTGTGGCGTTACCTGATGAGGCCAAGATCTCTGATGCCTACCA 420 consensus_2479#1 --TGATCTT-AGCTG-ACTGTG-CGT-ACCTGATAGG--CAAGA-CTCTGATGCTA--CA 333 ******* ***** ****** *** ******* * ***** ********* ** consensus_2479#0 GATGCTGAAGAAGCAAGGTATCATTAAACAAGACCCAGAGCTGCCGGCCGACCAGCTGCT 480 consensus_2479#1 GATGCTGAG--AGCA-GATATAACAGACCAAGTGCGCGA--------------------- 369 ******** **** * *** * * **** * ** consensus_2479#0 TCCTCCACCCAGACCCAAAAACACCATTTTTGAGGATGAGGAGAAGTCAAAAATGTTGGC 540 consensus_2479#1 ------------------------------------------------------------ consensus_2479#0 TCGCCTGTTGAACAGCTCTCACCCAGAAGATCTCAAAGCTGCCAACAAGCTCATCAAGGA 600 consensus_2479#1 ------------------------------------------------------------ consensus_2479#0 AATGGTCCAAGAGGACCAGAAGCGGACA 628 consensus_2479#1 ---------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |