These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 610 fasta sequence [GCTGTAAAACGTGCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTCGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCCGTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGACTTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCTCTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCTCAGCTGGCGTCTGGCTCCTACCGTAGCTACCTGATGCACGAGGACCTGGTTGTGACCGAGCG] [+] EMBL CA588393 [GCTGTAAAACGTGCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTCGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCCGTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGACTTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCTCTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCTCAGCTGGCGTCTGGCTCCTACCGTAGCTACCTGATGCACGAGGACCTGGTTGTGACCGAGCG] [+] EMBL BU805263 [ GCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCCGTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGACTTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCTCTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCTCAGCTGGCGTCTGGCTCCTACCGTAGCTACCTGATGCACGAGGACCTGGTTGTGACCGAG ] [+] EMBL CA590383 [ GCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTCGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCCGTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGACTTCAACAGGAAGCTGACAGCGTACCTGGGCCTGACACTGAGGACCTGCTTTGTGATTCCTCTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAAACCTCTTCTCTCAGCTGGCGTCTGGCTCCTACCGTAGCTACCTGATGCACGAGGACCTGGTT ] [+] EMBL CA333125 [ GCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTCGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACACAACNCGCGTGATCCCGGCC ] consensusID : consensus_2482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CAAACTGCGTCACAACCCGGAGCTGCGAAAGACAGCCCATCCGTCCACAGGTTCTGCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCCGTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGACTTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCTCTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCT] [+] EMBL BU805560 [CAAACTGCGTCACAACCCGGAGCTGCGAAAGACAGCCCATCCGTCCACAGGTTCTGCTCCGTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAGAGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCCGTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGACTTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCTCTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCT] consensusID : consensus_2482#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 358 fasta sequence [GCGAAAGACAGCCCACCGTCGACAGGTTCTGCTCCGTTGTCCTCTGAAGAAGCTGACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGCATCGACTTCATCCTCAGCGGGCTGATCGAGGGGGGGGAACGAATATATCGATAGTTCGCTCCAAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATTTCCAAGGTTTTTGGGGGGAAAAAAAGGGTTTTTAAAAAAAAA] [+] EMBL FR0063145 [GCGAAAGACAGCCCACCGTCGACAGGTTCTGCTCCGTTGTCCTCTGAAGAAGCTGACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTCGGCATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCTCCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATTTCCAAGGTTTTTGGGGGGAAAAAAAGGGTTTTTAAAAAAAAA] [+] EMBL CA333124 [ ACTCGGCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTGGCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGCATCGACTTCATCCTCAGTTTTTTTATCGAGGGGGGGAAACGAATATATCGATAGTTCGTTCCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2482#0 -------------------------------------------GCTGTAAAACGTGCTCC 17 consensus_2482#1 CAAACTGCGTCACAACCCGGAGCTGCGAAAGACAGCCCATCCGTCCACAGGTTCTGCTCC 60 consensus_2482#2 -------------------------GCGAAAGACAGCCCACCGTCGACAGGTTCTGCTCC 35 * * ****** consensus_2482#0 GTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCG 77 consensus_2482#1 GTTGTCCTCTGAAGAAGCTCACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCG 120 consensus_2482#2 GTTGTCCTCTGAAGAAGCTGACGGTTGCTCTTCGCCATGGTGAAGATTGCTTTCAACTCG 95 ******************* **************************************** consensus_2482#0 GCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTG 137 consensus_2482#1 GCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTG 180 consensus_2482#2 GCTCTGGCGCAGAAGGCGCTGGGCAAAGAGGTGCCGGTGGCCGTGAAGGATCCCGAGTTG 155 ************************************************************ consensus_2482#0 GCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTCGGC 197 consensus_2482#1 GCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGC 240 consensus_2482#2 GCTTCTGCCCCCTCCGGTAACGAGGGCTCCACAGGTCGCTGTCTGCTCACCCTGCTGGGC 215 ******************************************************** *** consensus_2482#0 ATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCT 257 consensus_2482#1 ATCGCCTTCATCCTCAGCGGGCTGATCGTGGGGGGGGCCTGCCTATATCGATACTTCGCT 300 consensus_2482#2 ATCGACTTCATCCTCAGCGGGCTGATCGAGGGGGGGGAACGAATATATCGATAGTTCGCT 275 **** *********************** ******** * ********** ****** consensus_2482#0 CCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAG 317 consensus_2482#1 CCTAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATCAGTTGGAAGTAAAGGAGAG 360 consensus_2482#2 CCAAAGAGGCTGTATCACGGTGTGATGCAGTTCAACACATTTCCAAGGTTTTTGGGGGGA 335 ** ************************************* * * ** * consensus_2482#0 AGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCC 377 consensus_2482#1 AGCCAGCCATACTACCTGCCACAGGTGGAGGAGGAGGTGGAGATTTCTGACAACACGGCC 420 consensus_2482#2 AAAAAAGGGTTTTTAAAAAAAAA------------------------------------- 358 * * * * * * consensus_2482#0 GTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGAC 437 consensus_2482#1 GTCATCAGTGTCCCACCTCCTCGTTTCAGACCAGGAGATCCAGCATACATCCTCCATGAC 480 consensus_2482#2 ------------------------------------------------------------ consensus_2482#0 TTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCT 497 consensus_2482#1 TTCAACAGGAAGCTGACAGCGTACCTGGACCTGACACTGAGGACCTGCTTTGTGATTCCT 540 consensus_2482#2 ------------------------------------------------------------ consensus_2482#0 CTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCTCAGCTGGCG 557 consensus_2482#1 CTGAATACCTCAGTGGTGCTCCCCCCTCAGGACCTCATAGACCTCTTCTCT--------- 591 consensus_2482#2 ------------------------------------------------------------ consensus_2482#0 TCTGGCTCCTACCGTAGCTACCTGATGCACGAGGACCTGGTTGTGACCGAGCG 610 consensus_2482#1 ----------------------------------------------------- consensus_2482#2 ----------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |