These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 605 fasta sequence [TAAGAGAAATTACCATTTTTTTCAGCTACATTGGTATTTGTATGACTACTGCATCAGGGCAGTAAAACGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTGGAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCC-TTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGAGGCTGCTCAGCTGGCACTGGAGCAGATGAATTCAGTCATGTTAGGGGGGAGAAACATTAAGGTTGGGCGGCCAGGTGGCATCGGTCAGGCGCAACCCATCATTGACCAACTGGCAGAGGAGGCACGTGCCTTTAACCGGATATACGTGGCGTCGGTC] [+] EMBL CA589760 [TAAGAGAAATTACCATTTTTTTCAGCTACATTGGTATTTGTATGACTACTGCATCAGGGCAGTAAAACGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCC TTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGAGGCTGCTCAGCTGGCACTGGAGCAGATGAATTCAGTCATGTTAGGGGGGAGAAACATTAAGGTTGGGCGGCCAGGTGGCATCGGTCAGGCGCAACCCATCATTGACCAACTGGCAGAGGAGGCACGTGCCTTTAACCGGATATACGTGGCGTCGGTC] [+] EMBL FR0061811 [ tATGGAGAATGGACAGGGCACAGGCTGGAAGCTTGGACTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATTAGACAGGCCTTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTTGGATTCTGTAACAATGAAGCACAAGGGGT ] [+] EMBL FR0061825 [ TGGAGAATGGACAGGGCACAGGCTGGAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCC TTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGGTTGC ] consensusID : consensus_2485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [AACGGAGACTGCGGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTCTCTCACCTTTACAATCGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGAGGCTGCTCAGCTGGCACTGGAGCAGATGAATTCAGTCATGTTAGGGGGGAGAAACATTAAGGTTGGGCGGCCAGGTGGCATCGGTCAGGCGCAACCCATCATTGACCAACTGGCAGAGGAGGCACGTGCCTTTAACCGGATA] [+] EMBL CA589160 [AACGGAGACTGCGGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTCTCTCACCTTTACAATCGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGAGGCTGCTCAGCTGGCACTGGAGCAGATGAATTCAGTCATGTTAGGGGGGAGAAACATTAAGGTTGGGCGGCCAGGTGGCATCGGTCAGGCGCAACCCATCATTGACCAACTGGCAGAGGAGGCACGTGCCTTTAACCGGATA] consensusID : consensus_2485#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence [AACGGAGACTGCGAATTTGTTGAGTTTTTAAAGCCTTCCCACGAGTCAACTTCCCCTTGGGGGCTTACCGTCTCATATTGGTGGACCCAACGTTTAGCAAGTTGCGTAGGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTGCAGAGGGCAAAGAAGTATGCCATGGAACGAAGTATTAAGAGCGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTCTCTCACCTTTACAATCGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGAGGCTGCTCAGCTGGCACTGGAGCAG] [+] EMBL CA590255 [AACGGAGACTGCGAATTTGTTGAGTTTTTAAAGCCTTCCCACGAGTCAACTTCCCCTTGGGGGCTTACCGTCTCATATTGGTGGACCCAACGTTTAGCAAGTTGCGTAGGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGATGGCAGCAGTGACAATGGGCTTTGGAGATCCTCTCTCACCTTTACAATCGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGAGGCTGCTCAGCTGGCACTGGAGCAG] [+] EMBL CA590104 [ CGATGGAGAATGGACAGGGCACAGGCTCCAATCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTGCACAGGGCAAAGAAGTATGCCATGGAACGATGTATTAAGAGC ] consensusID : consensus_2485#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [TGAGTTTTTAAAGCCTTCCCACGAGTCAACTTCCCCTTGGGGGCTTACCGTCTCATATTGGTGGACCCAACGTTTAGCAAGTTGCGTAGGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAATTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAA] [+] EMBL BU807667 [TGAGTTTTTAAAGCCTTCCCACGAGTCAACTTCCCCTTGGGGGCTTACCGTCTCATATTGGTGGACCCAACGTTTAGCAAGTTGCGTAGGGTGGTGAAGCTCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCCGGAGCAGCAGGAGGCACTACAGAGGGCAAAGAATTATGCCATGGAACAAAGTATTAAGAGTGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGGTGGCAGCCCAAAGACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGGGGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTCCTGGGATTCTGTAACAATGAAGCACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2485#2 AACGGAGACTGCGAATTTGTTGAGTTTTTAAAGCCTTCCCACGAGTCAACTTCCCCTTGG 60 consensus_2485#3 --------------------TGAGTTTTTAAAGCCTTCCCACGAGTCAACTTCCCCTTGG 40 consensus_2485#0 -----------------------------------------TAAGAGAAATTACCATTTT 19 consensus_2485#1 ------------------------------------------------------------ consensus_2485#2 GGGCTTACCGTCTCATATTGGTGGACCCAACGTTTAGCAAGTTGCGTAGGGTGGTGAAGC 120 consensus_2485#3 GGGCTTACCGTCTCATATTGGTGGACCCAACGTTTAGCAAGTTGCGTAGGGTGGTGAAGC 100 consensus_2485#0 TTTCAGCTACATTGGTATTTGTATGACTACTGCATCAGGGCAGTAAAACGGTGGTGAAGC 79 consensus_2485#1 ------------------------------------AACGGAGACTGCGGGTGGTGAAGC 24 *********** consensus_2485#2 TCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCC 180 consensus_2485#3 TCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCC 160 consensus_2485#0 TCTGACGATGGAGAATGGACAGGGCACAGGCTGGAAGCTTGGCCTTCCGCCTCTCACCCC 139 consensus_2485#1 TCTGACGATGGAGAATGGACAGGGCACAGGCTCCAAGCTTGGCCTTCCGCCTCTCACCCC 84 ******************************** ************************** consensus_2485#2 GGAGCAGCAGGAGGCACTGCAGAGGGCAAAGAAGTATGCCATGGAACGAAGTATTAAGAG 240 consensus_2485#3 GGAGCAGCAGGAGGCACTACAGAGGGCAAAGAATTATGCCATGGAACAAAGTATTAAGAG 220 consensus_2485#0 GGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAG 199 consensus_2485#1 GGAGCAGCAGGAGGCACTACAGAGGGCAAAGAAGTATGCCATGGAACAAAGTATTAAGAG 144 ****************** ************** ************* ************ consensus_2485#2 CGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGATGGC 300 consensus_2485#3 TGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAG----- 275 consensus_2485#0 TGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAG----- 254 consensus_2485#1 TGTGTTGGTGAAGCAGACCATTGCCCATCAGCAACAGCAGCTCACCAACCTGCAGATGGC 204 ****************************************************** consensus_2485#2 AGCAGTGACAATGGGCTTTGGAGATCCTCTCTCACCTTTACAATCGGTGGCAGCCCAAAG 360 consensus_2485#3 ----------------------------------------------GTGGCAGCCCAAAG 289 consensus_2485#0 ----------------------------------------------GTGGCAGCCCAAAG 268 consensus_2485#1 AGCAGTGACAATGGGCTTTGGAGATCCTCTCTCACCTTTACAATCGGTGGCAGCCCAAAG 264 ************** consensus_2485#2 ACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGG 420 consensus_2485#3 ACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGG 349 consensus_2485#0 ACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGG 328 consensus_2485#1 ACAGCGCGCGCTAGCCATAATGTGTCGGGTGTATGTGGGGTCCATATACTACGAGCTCGG 324 ************************************************************ consensus_2485#2 GGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTC 480 consensus_2485#3 GGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTC 409 consensus_2485#0 GGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTC 388 consensus_2485#1 GGAGGACACCATCAGACAGGCCTTTGCACCCTTCGGTCCCATCAAGAGCATTGACATGTC 384 ************************************************************ consensus_2485#2 CTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGA 540 consensus_2485#3 CTGGGATTCTGTAACAATGAAGCACAA--------------------------------- 436 consensus_2485#0 CTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGA 448 consensus_2485#1 CTGGGATTCTGTAACAATGAAGCACAAGGGGTTTGCCTTTGTAGAATATGACGTGCCAGA 444 *************************** consensus_2485#2 GGCTGCTCAGCTGGCACTGGAGCAG----------------------------------- 565 consensus_2485#3 ------------------------------------------------------------ consensus_2485#0 GGCTGCTCAGCTGGCACTGGAGCAGATGAATTCAGTCATGTTAGGGGGGAGAAACATTAA 508 consensus_2485#1 GGCTGCTCAGCTGGCACTGGAGCAGATGAATTCAGTCATGTTAGGGGGGAGAAACATTAA 504 consensus_2485#2 ------------------------------------------------------------ consensus_2485#3 ------------------------------------------------------------ consensus_2485#0 GGTTGGGCGGCCAGGTGGCATCGGTCAGGCGCAACCCATCATTGACCAACTGGCAGAGGA 568 consensus_2485#1 GGTTGGGCGGCCAGGTGGCATCGGTCAGGCGCAACCCATCATTGACCAACTGGCAGAGGA 564 consensus_2485#2 ------------------------------------- consensus_2485#3 ------------------------------------- consensus_2485#0 GGCACGTGCCTTTAACCGGATATACGTGGCGTCGGTC 605 consensus_2485#1 GGCACGTGCCTTTAACCGGATA--------------- 586 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |