These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 753 fasta sequence [TACTGCGGACTCGACTTCAGCAACTTGTCACCTCTGCGCTTCCGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACA-GACGTGGACACCAGTCCAGATTTCGGTGCTTTGGGGTTCCTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTTCAACTTCCAGGCGCCGGACATGCACGGGGGCGACTTTGCACTGATCGAGCTGGAAGTGTATCGAGTTGAAAGTTTGGGAATACTGCTTAAGAAACCCTGGAGGAACATTCAATGGACAACAGAGAAAAAGCAAGAGTTGCTACAGAACATTTCCAAGTACAGGCCTGGCATCAGTGCCGTTCCCCAGGCCCGAATCCTGTTGGTGGGGCCCGTCGGAGCTGGCAAATCCAGCTTCTTTAACTCCGTCAACTCGATATTCCGAGGCAGCATGACGTGCCAGGCCATC] [+] EMBL CA591571 [TACTGCGGACTCGACTTCAGCAACTTGTCACCTCTGCGCTTCCGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACA GACGTGGACACCAGTCCAGATTTCGGTGCTTTGGTGTTCCTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTTCAACTTCCAGGCGCCGGACATGCACGGGGGCGACTTTGCACTGATCGAGCTGGAAGTGTATCGAGTTGAAAGTTTGGGAATACTGCTTAAGAAACCCTGGAGGAACATTCAATGGACAACAGAGAAAAAGCAAGAGTTGCTACAGAACATTTCCAAGTACAGGCCTGGCATCAGTGCCGTTCCCCAGGCCCGAATCCTGTTGGTGGGGCCCGTCGGAGCTGGCAAATCCAGCTTCTTTAACTCCGTCAACTCGATATTCCGAGGCAGCATGACGTGCCAGGCCATC] [+] EMBL FR0061370 [ CGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACAGGACGTGGgac ] [+] EMBL FR0062023 [ TCACGTCCAGCCTGTCTCAAGAGCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGGACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGNGGGGGGC ] [+] EMBL FR0064095 [ GTCCAGCCTGTCTNAAGAGCAGGAGAAGAAGCTGCTCTCTCTCTCCGGACACGCCAGACTCCATCTCCTCTACAA GCANGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACA GACG ] [+] EMBL FR0059098 [ CTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCCCGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAAGGTGGTGGGCATCGCCGGACAGCCCGCATTCACA GACGTGGACACCAGTCCAGATTTCGGTGCTTTGGGGTTCCTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTTCAACTTTCAGGCGCCGGAC ] consensusID : consensus_2486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [AATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCGGACTGTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAATTTTTCTCAGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGGCGGGCGTGTCTATGGGGCCTATACCTCCAAGG] [+] EMBL CA589035 [AATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCGGACTGTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAATTTTTCTCAGCGATCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCTCTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCACCGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAACACGGGCGGGCGTGTCTATGGGGCCTATACCTCCAAGG] consensusID : consensus_2486#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [CATGACTCGTTTAAAACTATTGGACAGTGCCTATGAACGTATATATTTACCGCATGTCTTTTAATTGTTGTAAATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCGGACTCTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAAACCGAACTCAGTTGTCGTAAAAAACGTCTAGAAGTTTTATATTGTGCATTCGATAGTTCGATACTCAATCAAATAATAGCGTGCGCAATGAAGGA] [+] EMBL FR0059472 [CATGACTCGTTTAAAACTATTGGACAGTGCCTATGAACGTATATATTTACCGCATGTCTTTTAATTGTTGTAAATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCGGACTCTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAAACCGAACTCAGTTGTCGTAAAAAACGTCTAGAAGTTTTATATTGTGCATTCGATAGTTCGATACTCAATCAAATAATAGCGTGCGCAATGAAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2486#0 ------------------------------------------------------------ consensus_2486#1 AATCACAATTTAAATCGTCAGTTTTATCTAGAGAACCAAACATACTTTCACTTTCGATCG 60 consensus_2486#2 ------------------------------------------------------------ consensus_2486#0 -------------TACTGCGGACTCGACTTCAGCAACTTGTCACCTCTGCGCTTCCGCGA 47 consensus_2486#1 GACTGTATACAGTTTCAGCTGTAATCGTTTCGACGGTCCATAAAATTTT--TCTCAGCGA 118 consensus_2486#2 ---------------------------CATGACTCGTTTAAAACTATTGGACAGTGCCTA 33 * * * * * consensus_2486#0 TCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCT 107 consensus_2486#1 TCTGTCCACCATGTCTACCATCACGTCCAGCCTGTCTCAAGATCAGGAGAAGAAGCTGCT 178 consensus_2486#2 TGAACGTAT-ATATTTACCG-CATGTCTTTTAATTGTTGTAAATCACAATTTAAATCGTC 91 * * ** * **** ** *** * * * * ** * consensus_2486#0 CTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCAC 167 consensus_2486#1 CTCTCTCTTTGGACACGCCAGACTCCATCTCCTCTACAAGGCCAGCGTCCAGGGCTTCAC 238 consensus_2486#2 AGTTTTATCTAGAGA-ACCAAACATACTTTCACTTTCGATCGGACTCTATACAGTTTCAG 150 * * * * ** * *** ** * ** * * * * * * * **** consensus_2486#0 CGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAA 227 consensus_2486#1 CGCTGATGCTTTCCACAGTCGCTGTGACCATCAGGGCCCCACTGTCATAGTGGCCTTCAA 298 consensus_2486#2 CTGTAATCGTTTCGACGGTC--CATAAAAACC-GAACTCAGTTGTCGTAAAAAACGTCTA 207 * * ** **** ** *** * * * * * * * **** ** * ** * consensus_2486#0 CACGGCCGGGCGTGTCTATGGGGCCTATACCTCCAAGGACTACACCAAGAGCGGGCAGCC 287 consensus_2486#1 CACGGGCGGGCGTGTCTATGGGGCCTATACCTCCAAGG---------------------- 336 consensus_2486#2 GAAGTTTTATATTGTGCAT----TCGATAGTTCGAT--ACTCAATCAAATAATAGC-GTG 260 * * *** ** * *** ** * consensus_2486#0 CGTCATCGATGGCGAGGCCTTCCTGTACAGCATCAAAGCAGAGGAACCCAAACCTCTGAA 347 consensus_2486#1 ------------------------------------------------------------ consensus_2486#2 CGCAATGAAGGA------------------------------------------------ 272 consensus_2486#0 GGTGGTGGGCATCGCCGGACAGCCCGCATTCACAGACGTGGACACCAGTCCAGATTTCGG 407 consensus_2486#1 ------------------------------------------------------------ consensus_2486#2 ------------------------------------------------------------ consensus_2486#0 TGCTTTGGGGTTCCTGCACGACAACAAACCCAGCGTTCTGTCCAATCCGGGGACGAATTT 467 consensus_2486#1 ------------------------------------------------------------ consensus_2486#2 ------------------------------------------------------------ consensus_2486#0 CAACTTCCAGGCGCCGGACATGCACGGGGGCGACTTTGCACTGATCGAGCTGGAAGTGTA 527 consensus_2486#1 ------------------------------------------------------------ consensus_2486#2 ------------------------------------------------------------ consensus_2486#0 TCGAGTTGAAAGTTTGGGAATACTGCTTAAGAAACCCTGGAGGAACATTCAATGGACAAC 587 consensus_2486#1 ------------------------------------------------------------ consensus_2486#2 ------------------------------------------------------------ consensus_2486#0 AGAGAAAAAGCAAGAGTTGCTACAGAACATTTCCAAGTACAGGCCTGGCATCAGTGCCGT 647 consensus_2486#1 ------------------------------------------------------------ consensus_2486#2 ------------------------------------------------------------ consensus_2486#0 TCCCCAGGCCCGAATCCTGTTGGTGGGGCCCGTCGGAGCTGGCAAATCCAGCTTCTTTAA 707 consensus_2486#1 ------------------------------------------------------------ consensus_2486#2 ------------------------------------------------------------ consensus_2486#0 CTCCGTCAACTCGATATTCCGAGGCAGCATGACGTGCCAGGCCATC 753 consensus_2486#1 ---------------------------------------------- consensus_2486#2 ---------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |