|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 735 fasta sequence
[CTGCAGACAGCAGCAGCACCTTCTCCGGCCTGCATCACCTCACAATGTCCGGCATCGCAGCCAAACTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGAGTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGCAATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTGCTGTTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACGCCAAAGTAAACGGATGGTACGAGGCTCCTTCCGGAGGCAGCACCACTGAGGGCTTCCAGGACTTCACGGGGGGGCATTTCTGACCGACCCGACCTGGGGAAAACCGGATCCTCACCTTCTTCCAAATCCACAAGA]
[+] EMBL BU808417 [CTGCAGACAGCAGCAGCACCTTCTCCGGCCTGCATCACCTCACAATGTCCGGCATCGCAGCCAAACTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGAGTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGCAATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTGCTGTTCGTCCACTCGGCTGAAAGCTCGGAGTTTTGGAGC ]
[+] EMBL CA333116 [ CAGCAGTAGCACCTTCTCCGGCCTGCATCACCTCACAATGTCCGGCATCGCAGCCAAACTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGAGTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCACAATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTGCTGTTCCTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGGTGGAAAAGGCTTACGCCAAAAGA ]
[+] EMBL CA845945 [ CCTCTTCAGCCTGCATCACCTCACAATGTCCGGCATCGCAGCC ACTTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGAGTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGCAATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTGCTGGTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACCCCCAAGTAAACGGATGGTACGAGGCTCCTTCCCGA GCAGCACCACTGAGGGCTTCCAGGACTTCACGGGGGGGCATTTCTGACCGACCCGACCTGGGGAAAACCGGATCCTCACCTTCTTCCAAATCCACAAGA]
[+] EMBL CA589489 [ CTTCTCCGGCCTGCATCACCTCACAATGTCCGGCATCGCAGCCAAACTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTCTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGAGTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGCAATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTGCTGTTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACGCCAAAGTAAACGGATGCTACGAGGCTCTTTCCGGAGGCAGC ]
[+] EMBL FR0058915 [ CTTCTCCGGCCTGCATCACCTCACAATGTCCGGTTTTG AGCCAAACTCCGGCACAACCGGGACAGAGCTCAGGCCATCGGAACCACCGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGCGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGGTGGGGTACGATGAACTGGGCCCGAGTTCATACAAAGGTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGCAATTCATCGTGGAAAATGCTTCAAGGACT ]
[+] EMBL FR0058505 [ TCGCAGCCAATCTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGAAATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGTTCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGAGTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGCAATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGGTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTT ]
consensusID : consensus_2489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[TGTGTGTCTGCAGGTGCACTGCATCGCTGTGTTTTGCAACGTTAATTTGATATTGCACAGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTTCTGTTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACGCCAAAGTAAACGGATGCTACGAGGCTCTTTCCGGAGGCAGCACCACTGAGGGCTTCCAGGACTTCACGGGGGGCATTTCTCGACGACCCGACCTGGGAAACGCCCATACTCCCCTCTTCCACATCATCAATAACGCACCTGCACACAAGGCT]
[+] EMBL CA332759 [TGTGTGTCTGCAGGTGCACTGCATCGCTGTGTTTTGCAACGTTAATTTGATATTGCACAGGTGACTGCTGGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCCCGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGTTTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTTCTGTTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACGCCAAAGTAAACGGATGCTACGAGGCTCTTTCCGGAGGCAGCACCACTGAGGGCTTCCAGGACTTCACGGGGGGCATTTCTCGACGACCCGACCTGGGAAACGCCCATACTCCCCTCTTCCACATCATCAATAACGCACCTGCACACAAGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2489#0 CTGCAGACAGCAGCAGCACCTTCTCCGGCCTGCATCACCTCACAATGTCCGGCATCGCAG 60
consensus_2489#1 ------------------------------------------------------------
consensus_2489#0 CCAAACTCCGGCACAACCGGGACAGAGCTCAGGGGATCGGAACCAACGACCATGCCCAGA 120
consensus_2489#1 ------------------------------------------------------------
consensus_2489#0 AATACTTGAACCAGGATTTTGAATCGCTGAGGGACGACTGTCTGGAGAGGGGAGTGCTGT 180
consensus_2489#1 ------------------------------------------------------------
consensus_2489#0 TCGAGGACGACTACTTCGAGGCTTTGCCCTCATCGTTGGGTTACGATGAACTGGGCCCGA 240
consensus_2489#1 ------------------------------------------------------------
consensus_2489#0 GTTCATACAAAGTTCGGGGCATCGCCTGGAAAAGGCCGACGGAATTGTGCTCCAATCCGC 300
consensus_2489#1 -------------------------------------------TGTGTGTCTGCAGGTGC 17
**** * **
consensus_2489#0 AATTCATCGTGGAAAATGCTTCAAGGACTGATATTTGTCAAGGAGCGCTTGGTGACTGCT 360
consensus_2489#1 ACTGCATCGCTG----TGTTTTGCAACGTTA-ATTTGATATTGCACA---GGTGACTGCT 69
* * ***** * ** ** * * ***** * * * **********
consensus_2489#0 GGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCC 420
consensus_2489#1 GGCTGCTGGCGGCCATCGCCTCCCTGACCCTCAACAAACAGGTTCTGTCTCGGGTCGTCC 129
************************************************************
consensus_2489#0 CGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGT 480
consensus_2489#1 CGCACGACCAAAGCTTTGAGGACAACTACGCTGGCATCTTTCACTTTGAGTTCTGGCAGT 189
************************************************************
consensus_2489#0 TTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTGC 540
consensus_2489#1 TTGGCGAGTGGGTTGACGTGGTGGTGGACGACCGATTACCCACCAAAGACGGGAAGCTTC 249
********************************************************** *
consensus_2489#0 TGTTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACG 600
consensus_2489#1 TGTTCGTCCACTCGGCTGAAGGCTCGGAGTTTTGGAGCGCTCTGCTGGAGAAGGCTTACG 309
************************************************************
consensus_2489#0 CCAAAGTAAACGGATGGTACGAGGCTCCTTCCGGAGGCAGCACCACTGAGGGCTTCCAGG 660
consensus_2489#1 CCAAAGTAAACGGATGCTACGAGGCTCTTTCCGGAGGCAGCACCACTGAGGGCTTCCAGG 369
**************** ********** ********************************
consensus_2489#0 ACTTCACGGGGGGGCATTTCTGACCGACCCGACCTGGGGAAAACCGGATCCTCACCTTCT 720
consensus_2489#1 ACTTCACGGGGGG-CATTTCTCGACGACCCGACCTGGGAAACGCCC-ATACTC-CCCTCT 426
************* ******* ************** ** ** ** *** ** ***
consensus_2489#0 TCCAAATCCACAAGA-------------------- 735
consensus_2489#1 TCCACATCATCAATAACGCACCTGCACACAAGGCT 461
**** *** *** *
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |