These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2520#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 583 fasta sequence [GGAGAACAGGAGCGTTTCTGCCCCGCTGAGGTGACTCTGCTGCCGCGGTGCTGGATTATTGGACCGAAGACATGGCTGTGACCGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAGAGGTCCGGCTGATGAAGAACAGGGAGGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAGTACGTCAGGTGCCTGGAGAACCGCGTGGCGGTGCTGGAGAACCAGAACAAGACCCTGATCGAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACAAGGCTGAGTAGACCTGAGGCGGCGCCAGGTCCAGCACC-GAAAGAGACTCCAGAACAAAAGCTGCTTTGACCGTCTTTGTTTCTCTGCTCACTCCAGCCCGGCGCCTCCCGGCCAGAACCCCGAGCTCTCGTTCTTGTCTCGTTGTCTTTGCGTGTGGAGACCCAAGTGTCCTATGCACTCTGCCTGC] [+] EMBL CA588997 [GGAGAACAGGAGCGTTTCTGCCCCGCTGAGGTGACTCTGCTGCCGCGGTGCTGGATTATTGGACCGAAGACATGGCTGTGACCGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAGAGGTCCGGCTGATGAAGAACAGGGAGGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAGTACGTCAGGTGCCTGGAGAACCGCGTGGCGGTGCTGGAGAACCAGAACAAGACCCTGATCGAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACAAGGCTGAGCAGACCTGAGGCGGCGCCAGGTCCAGCACC GAAAGAGACTCCAGAACAAAAGCTGCTTTGACCGTCTTTGTTTCTCTGCTCACTCCAGCCCGGCGCCTCCCGGCCAGAACCCCGAGCTCTCGTTCTTGT ] [+] EMBL FR0062353 [GGAGAACAGGAGCGTTTCTGCCCCGCTGAGGTGACTCTGCTGCCGCGGTGCTGGATTATTGGACCGAAGACATGGCTGTGACCGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAGAGGTCCGGCTGATGAAGAACAGGGAGGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAGTACGTCAGGTGCCTGGAGAACCGCGTGGCGGGGCTGGAGAACCAGAACAAGACCCTGATGGAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACNAAGCTtgag ] [+] EMBL CA333506 [ TCTGCCCCGCTGAGGTGACTCTGCTGCCGCGGTGCTGGATTATTGGACCGAAGACATGGCTGTGACCGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAGAGGTCCGGCTGATGAAGAACAGGGAGGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAGTACGTCAGGTGCCTGGAGAACCGCGTGGCGGTGCTGGAGAACCAGAACAAGACCCTGATCGAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACAAGGCTGAGTAGACCTGAGGCGGCGCCAGGTCCAGCACC GAAAGAGACTCCAGAACAAAAGCTGCTTTGACCGTCTTTGTTTCTCTGCTCACTCCAGCCCGGCGCCTCCCGGCCAGAACCCCGAGCTCTCGTTCTTGTCTCGTTGTCTTTGCGTGTGGAGACCCAAGTGTCCTATGCACTCTGCCTGC] [+] EMBL FR0063600 [ CCGCTGAGGTGACTCTGCTGCCGCGGCGCTGGATTATTGGACCGAAGACATGGCTGGGGGGGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAGAGGTCCGGCTGATGAAGAACAGGGAGGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAGTACGTCAGGTGCCTGGAGAACCGCGTGGCGGGGCTGGAGAACCAGAACAAGACCCTGATCGAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACAAGGCTGAGTAGACCTGAGGCGGCGCCAGGTCCAGCACCGGAAAGAGACTCCAGAACAAAAGCT ] [+] EMBL FR0055870 [ GGACCGAAGACATGGCTGTGACCGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGCCCACCTACCAGCTGGGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAGAGGTCCGGCTGATGAAGAACAGGGAGGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAGTACGTCAGGTGCCTGGAGAACCGCGTGGCGGTGCTGGAGAACCAGAACAAGACCCTGATCGAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACAAGGCTGAGTACACCTGAGGCGGTGCCAGGTCCAGCACC GACTGAGACTCCAGAGCAGAAGCTGCTTTGACCGTCTTTGTTTCTCTGCTCACTCCATC ] consensusID : consensus_2520#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 404 fasta sequence [GCAGAGCAGTTTAAAGTTGGCTCGCGAGGGTTTCAAGAGAATCACGGTCCAAAATTAGCAGCTCGGCACCGTCCGGTGGTCCTGCGGCAACAGGCGGCCCGCCGACACCCACCTGTTGCCCGGAGACAACAGCCAGGAATACGGGGGAGTGCGGCTAATAGGGCGGAGGAACAGCAAGAAAACAGCGTGTTCACTTTTAATTAAGGAACTATAAAAAAGTCACCTGGAAGAACGTTCGCAATCGGTCAGCTGACCTCTACCGGGCTCTCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGGTCCATGCAGACCTCCACCTTCGACCAGGCCGAGGAGATCACCCGGAAGAG] [+] EMBL BU807994 [GCAGAGCAGTTTAAAGTTGGCTCGCGAGGGTTTCAAGAGAATCACGGTCCAAAATTAGCAGCTCGGCACCGTCCGGTGGTCCTGCGGCAACAGGCGGCCCGCCGACACCCACCTGTTGCCCGGAGACAACAGCCAGGAATACGGGGGAGTGCGGCTAATAGGGCGGAGGAACAACAAGAAAACAGCGTGTTCACTTTTAATTAA ] [+] EMBL FR0059941 [ GCACCGTCCGGTGGTCCTGCGGCAACAGGCGGCCCGCCGACACCCACCTGTTGCCCGGAGACAACAGCCAGGAATACGGGGGAGTGCGGCTAATAGGGCGGAGGAACAGCAAGAAAACAGCGTGTTCACTTTTAATTAAGGAACTATAAAAAAGTCACCTGGAAGAACGTTCGCAATCGGTCAGCTGACCTCTACCGGGCTCTCTGCTACAGGAGACATGCCCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCTCCCAGGGGTCCATGCAGACCTCCACCTTCGACCAGGCCGAGGAGATCACCCGGAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2520#0 GGAGAACAGGAGCGTTTCTGCCCCGCTGAGGTGACTCTGCTGCCGCGGTGCTGGATTATT 60 consensus_2520#1 ------------------------------------------------------------ consensus_2520#0 GGACCGAAGACATGGCTGTGACCGGGGACGAGACCGAGTCAGCTGCTACAGGAGACATGC 120 consensus_2520#1 --------------------------------GCAGAG-CAGTT--TAAAGTTGGCTCGC 25 * *** *** * ** ** * * ** consensus_2520#0 CCACCTACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGCATCGTGATCGCCACCT 180 consensus_2520#1 GAGGGTTTCAA--GAGAATCACGGTCCAAAATTAGCAGCTCGGCACCGT--CCGGTGG-T 80 * ** *** * * ** * ** * *** *** ** * consensus_2520#0 CCCAGGGCTCCATGCAGACCTCCACCTCGCACCAGGCCGAGGAGATCACCCGGAAGAGAG 240 consensus_2520#1 CCTGCGGCAACAGGCGGCCCGCCGACACCCACCTG----------TTGCCCGGAGACAAC 130 ** *** ** ** * ** ** * * **** * * ****** * consensus_2520#0 AGGTCCGGCTGATGAAGAACAGGGA-GGCAGCGCGGGAATGCCGCAGGAAAAAGAAAGAG 299 consensus_2520#1 AGCCAGGAATACGGGGGAGTGCGGCTAATAGGGCGGAGGAACAGCAAGAAAAC-AGCGTG 189 ** * * * ** ** ** **** * *** ***** * * * consensus_2520#0 TACGTCAGGTGCCTGGAGAACCGCGTGGCGGTGCTGGAGAACCAGAACAAGACCCTGATC 359 consensus_2520#1 TTCA-CTTTTAATTAAGGAACTATAAAAAAGTCACCTGGAA---GAAC--GTTCGCAATC 243 * * * * * **** ** *** **** * * *** consensus_2520#0 GAGGAGCTGAAAGCACTGAAAGACCTTTACTGCCACAAGGCTGAGTAGACCTGAGGCGGC 419 consensus_2520#1 GGTCAGCTGAC--CTCTACCGGGCTCT--CTGCTACAGG-------AGACATGCCCACCT 292 * ****** * ** * * * **** *** * **** ** consensus_2520#0 GCCAGGTCCAGCACCGAAAGAGACTCCAGAACAAAAGCTGCTTTGACCGTCTTTGTTTCT 479 consensus_2520#1 ACCAGCTGAGGAGCCCGAACTCTGGCCTGCCCCAGAGC-ATCGTGATCGCCACC-TCCCA 350 **** * * ** ** ** * * * *** *** ** * * * consensus_2520#0 CTGCTCACTCCAGCCCGGCGCCTCCCGGCCAGAACCCCGAGCTCTCGTTCTTGTCTCGTT 539 consensus_2520#1 GGGGTCCATGCAGACCTCCACCTTC-GACCAGGCCGAGGAGATCACCCGGAAGAG----- 404 * ** * *** ** * *** * * **** * *** ** * * consensus_2520#0 GTCTTTGCGTGTGGAGACCCAAGTGTCCTATGCACTCTGCCTGC 583 consensus_2520#1 -------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |