These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACGAGTCGACCTGGAGCAGAAACACCGAGGACACAAAGAGAGAGAGGTCACCCACACCCGAACTCGGCAACCAGTGGAATGGCAACGGCGAGCACCTCAGGGCAGAGCAGCTTCGGACTCGGCAGGTTTAAGAAGAACCCTGGACTCATGGATCAGATAGGCCAGTTCTTTGGAGGAGACAAAAAGAAACGGAGCAAGGGCTCCTTCCGGGGCCACCTCTCCTCCTCGCCCCAGCAGTCCTCCGCCCGCCGCCGGACCAATGAAAATGCTCTGTTGCATTTCTTCAGGAGCTTTGGAGAACCCAAGTCCCGTCCACCCCCTAAACGCTGGAGCACCATCTTCTAAGCTCTCCACCCAAGACCTGAGATCAGACAGGCCAGGATGAAGGCGGTCCAGACCTGCAAGTGACAGACTCCCGACCTCGACCAGTGTTAACCCACTAACGCCGTTCAGACGGGGACAGGAAGTCCTGCTGCTGTCACGTCATCGGTCATGTT] [+] EMBL CA330854 [AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACGAGTCGACCTGGAGCAGAAACACCGAGGACACAAAGAGAGAGAGGTCACCCACACCCGAACTCGGCAACCAGTGGAATGGCAACGGCGAGCACCTCAGGGCAGAGCAGCTTCGGACTCGGCAGGTTTAAGAAGAACCCTGGACTCATGGATCAGATAGGCCAGTTCTTTGGAGGAGACAAAAAGAAACGGAGCAAGGGCTCCTTCCGGGGCCACCTCTCCTCCTCGCCCCAGCAGTCCTCCGCCCGCCGCCGGACCAATGAAAATGCTCTGTTGCATTTCTTCAGGAGCTTTGGAGAACCCAAGTCCCGTCCACCCCCTAAACGCTGGAGCACCATCTTCTAAGCTCTCCACCCAAGACCTGAGATCAGACAGGCCAGGATGAAGGCGGTCCAGACCTGCAAGTGACAGACTCCCGACCTCGACCAGTGTTAACCCACTAACGCCGTTCAGACGGGGACAGGAAGTCCTGCTGCTGTCACGTCATCGGTCATGTT] consensusID : consensus_255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [GCAACCAGTGGAATGGCAACGGCGAGCTCCTCACGGCAGAGCAGCTTCGGACTCGGCAGGAAGAAGAAGAACCCTGGACTCATGGATCAGATAGGCCAGTTCTTTGGAGGAGACAAAAAGAAACGGAGCAAGGGCTCCTTCCGGGGCCACCTCTCCTCCTCGCCCCAGCAGTCCTCCGCCCGCCGCCGGACCAATGAAAATGCTCTGTTGCATTTCTTCAGGAGCTTTGTTTCCTCTCCTCGTCCTAAATCCAGGGCCTCCTCGCCGCGGACCGAGAGCGCCAAGTCACCAGTGAGGAAACGCAGAGACCAAAGCACGCTGTCCAGACTCTTCAACCTGTGACCCCCCACCTCAGAGATCAGGAGAACCCAAGTCCCGTCCACCCCCTAAACGCTGGAGCACCATCTTCTAAGCTCTCCACCCAAGACCTGAGATCAGACAGGCCAGGATGAAGGCGGTCCAGACCTGCAAGTGACAGACTCCCGACCTCGACCAGTGTTAACCCACTAACGCCGTTCAGACGGGGACAGGAAGTCCTGCTGCTGTCACGTCATCGGTCATGTTT] [+] EMBL CA330052 [GCAACCAGTGGAATGGCAACGGCGAGCTCCTCACGGCAGAGCAGCTTCGGACTCGGCAGGAAGAAGAAGAACCCTGGACTCATGGATCAGATAGGCCAGTTCTTTGGAGGAGACAAAAAGAAACGGAGCAAGGGCTCCTTCCGGGGCCACCTCTCCTCCTCGCCCCAGCAGTCCTCCGCCCGCCGCCGGACCAATGAAAATGCTCTGTTGCATTTCTTCAGGAGCTTTGTTTCCTCTCCTCGTCCTAAATCCAGGGCCTCCTCGCCGCGGACCGAGAGCGCCAAGTCACCAGTGAGGAAACGCAGAGACCAAAGCACGCTGTCCAGACTCTTCAACCTGTGACCCCCCACCTCAGAGATCAGGAGAACCCAAGTCCCGTCCACCCCCTAAACGCTGGAGCACCATCTTCTAAGCTCTCCACCCAAGACCTGAGATCAGACAGGCCAGGATGAAGGCGGTCCAGACCTGCAAGTGACAGACTCCCGACCTCGACCAGTGTTAACCCACTAACGCCGTTCAGACGGGGACAGGAAGTCCTGCTGCTGTCACGTCATCGGTCATGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_255#0 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 60 consensus_255#1 ------------------------------------------------------------ consensus_255#0 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACGAGTC 120 consensus_255#1 ------------------------------------------------------------ consensus_255#0 GACCTGGAGCAGAAACACCGAGGACACAAAGAGAGAGAGGTCACCCACACCCGAACTCGG 180 consensus_255#1 -----------------------------------------------------------G 1 * consensus_255#0 CAACCAGTGGAATGGCAACGGCGAGCACCTCAGGGCAGAGCAGCTTCGGACTCGGCAGGT 240 consensus_255#1 CAACCAGTGGAATGGCAACGGCGAGCTCCTCACGGCAGAGCAGCTTCGGACTCGGCAGGA 61 ************************** ***** ************************** consensus_255#0 TTAAGAAGAACCCTGGACTCATGGATCAGATAGGCCAGTTCTTTGGAGGAGACAAAAAGA 300 consensus_255#1 AGAAGAAGAACCCTGGACTCATGGATCAGATAGGCCAGTTCTTTGGAGGAGACAAAAAGA 121 ********************************************************** consensus_255#0 AACGGAGCAAGGGCTCCTTCCGGGGCCACCTCTCCTCCTCGCCCCAGCAGTCCTCCGCCC 360 consensus_255#1 AACGGAGCAAGGGCTCCTTCCGGGGCCACCTCTCCTCCTCGCCCCAGCAGTCCTCCGCCC 181 ************************************************************ consensus_255#0 GCCGCCGGACCAATGAAAATGCTCTGTTGCATTTCTTCAGGAGCTTTG------------ 408 consensus_255#1 GCCGCCGGACCAATGAAAATGCTCTGTTGCATTTCTTCAGGAGCTTTGTTTCCTCTCCTC 241 ************************************************ consensus_255#0 ------------------------------------------------------------ consensus_255#1 GTCCTAAATCCAGGGCCTCCTCGCCGCGGACCGAGAGCGCCAAGTCACCAGTGAGGAAAC 301 consensus_255#0 ------------------------------------------------------------ consensus_255#1 GCAGAGACCAAAGCACGCTGTCCAGACTCTTCAACCTGTGACCCCCCACCTCAGAGATCA 361 consensus_255#0 -GAGAACCCAAGTCCCGTCCACCCCCTAAACGCTGGAGCACCATCTTCTAAGCTCTCCAC 467 consensus_255#1 GGAGAACCCAAGTCCCGTCCACCCCCTAAACGCTGGAGCACCATCTTCTAAGCTCTCCAC 421 *********************************************************** consensus_255#0 CCAAGACCTGAGATCAGACAGGCCAGGATGAAGGCGGTCCAGACCTGCAAGTGACAGACT 527 consensus_255#1 CCAAGACCTGAGATCAGACAGGCCAGGATGAAGGCGGTCCAGACCTGCAAGTGACAGACT 481 ************************************************************ consensus_255#0 CCCGACCTCGACCAGTGTTAACCCACTAACGCCGTTCAGACGGGGACAGGAAGTCCTGCT 587 consensus_255#1 CCCGACCTCGACCAGTGTTAACCCACTAACGCCGTTCAGACGGGGACAGGAAGTCCTGCT 541 ************************************************************ consensus_255#0 GCTGTCACGTCATCGGTCATGTT- 610 consensus_255#1 GCTGTCACGTCATCGGTCATGTTT 565 *********************** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |