These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 621 fasta sequence [AAGTCAGAGGAGCTGACAAGAGTCACCTGCACAAGAGTCAAAGCCCGGAACCAGCTGGAGCAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGAAGATGCCGTATACCCACATGCGCCATCATCGTCCTGCACGCTGCAGGTTTTGCTGTCGATGCTGTCCTGGAATGCAGGGATG-TGGAATCTGTTGCGATTTCTAATTATTCTTTCAGTTTTATCAGTTATCAGTTTTTGCAAGAAAAAAGAAACTTTCAAGAAACTGATATTTTTCAGGATATATATTTTTATTTCAATATTTGGCTATAATAATCATCAGTCATTCATTGTGGTGAAATGTTTTCATATATAGAAAAGTGAAAATTAATTTCCATCAACTATTGTTTGAACGTGTTCTTTCATTCATGTTTGCATGTGAAAATATAGTTTCAATGTATCAACTGATTTTCTTTCTGGGTGTTTTCCTGCTTTACAAACAC] [+] EMBL BU807175 [AAGTCAGAGGAGCTGACAAGAGTCACCTGCACAAGAGTCAAAGCCCGGAACCAGTTGGAGCAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGAAGATGCCGTATACCCACATGCGCCATCATCGTCCTGCACGCTGCAGGTTTTGCTGTCGATGCTGTCCTGGAATGCAGGGATG TGGAATCTGTTGCGATTTCTAATTATTCTTTCAGTTTTATCAGTTATCAGTTTTTGCAAGAAAAAAGAAACTTTCAAGAAACTGATATTTTTCAGGATATATATTTTTATTTCAATATTTGGCTATAATAATCATCAGTCATTCATTGTGGTGAAATGTTTTCATATATAGAAAAGTGAAAATTAATTTCCATCAACTATTGTTTGAACGTGTTCTTTCATTCATGTTTGCATGTGAAAATATAGTTTCAATGTATCAACTGATTTTCTTTCTGGGT ] [+] EMBL CA330705 [ CACCTGGAGCAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGAAGATGCCTTATATTCTCATGCGCCATCATCGACCTGCACGCTGCAGGTTTTGCTGTCGATGCTGTCCTGGAATGCAGGGATG TGGAATCTGATGCGATTTCTAATTATTCTTTCAGGTTTATCAATTATCAATTTTTGCAAGAAAAAAGAAACTTTCGAGAAACTGATATTTTTCAAGATATATATTTTTATTTCAATATTTGGGTATAATAATCGTCAAAAATTCATTGAGGAGAAATGGTTTCATATATAAAA ] [+] EMBL FR0056520 [ AGCAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGAAGATGCCGTATACCCACATGCGCCATCATCGTCCTGCACGCTGCAGGTTTTGCTGTCGATGCTGTCCTGGCATGCAGGGATGTTGGAATCTGTTGCGATTTCCAATTATTCTTTCAGTTTTA ] [+] EMBL FR0055973 [ AGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGTAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGTACATGCCGTATACCCACATGCGCCATCATCGTCCTGCACGCTGCATGTTTTGCTGTCGATGCTGTCCTGGAATGCATGGATG TGGAATCTGTTGCGATTTCTAATTAGTCTTTCAGTTTTATCAGTTATCAGTTTTTGCACGActtctg ] [-] EMBL CA588688 [ GTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGAAGATGCCGTATACCCACATGCGCCATCATCGTCCTGCACGCTGCAGGTTTTGCTGTCGATGCTGTCCTGGAATGCAGGGATG TGGAATCTGTTGCGATTTCTAATTATTCTTTCAGTTTTATCAGTTATCAGTTTTTGCAAGAAAAAAGAAACTTTCAAGAAACTGATATTTTTCAGGATATATATTTTTATTTCAATATTTGGCTATAATAATCATCAGTCATTCATTGTGGTGAAATGTTTTCATATATAGAAAAGTGAAAATTAATTTCCATCAACTATTGTTTGAACGTGTTCTTTCATTCATGTTTGCATGTGAAAATATAGTTTCAATGTATCAACTGATTTTCTTTCTGGGTGTTTTCCTGCTTTACAAACAC] [+] EMBL CA330412 [ TAGAAAAGTGAAAATTAATTTCCATCAACTATTGTTTGAACGTGTTCTTTCATTCATGTTTGCATGTGAAAATATAGTTTCAATGTATCAACTGAaaa ] consensusID : consensus_2573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 523 fasta sequence [GTCAGAGGAGCTGACAAGAGTCACCTGCACAAGAGTCAAAGCCCGGAACCAGTTGGAGCAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAAGTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGAAGATGCCGTATACCAACTATATACAAGCGGAGTCCTAAACGCTGCAGGTTTTGCTGTAATTGCTGCCCTGGAATGCGGGGATGTGGTGCCTGCTGCGGGTTCTGATCACTCCCGATGTCACCAACTATAACACGAGATTATTATTTGTAAACTTGAAAGTAATGAGTGACACTGTGGTTTTCAATATCTGATGTTCCTTCTGGACTTTGTCATTCTGCCATGACGTCCATCAGCCTTCACGGAGCTGAAATGTTTGCAGTTATGTCCAAGTGGTCCAAATAAAC] [+] EMBL CA589455 [GTCAGAGGAGCTGACAAGAGTCACCTGCACAAGAGTCAAAGCCCGGAACCAGTTGGAGCAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAAGTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGACGATGCCTTATACCAAC ATATACAAGCGTCGTCCTCAACGTTGCAGGTTTTGCTGTAATTGCTGCCCTGGAATACAGGGATGTGGTCCCTGCTGCGGGTTCTGATCACTCCCGATGTCACCAACTATAACCCTCGATTTTTATTTGTAAACTTGAAAGTATTGAGTGACACTGTGGTTTTCAATATCTGATGTTTCTTCTGGACTTTGTCATTCTGCCATGACGTCCATCAGCCTTCACGGAGCTGAAATGTTTGCAGTTATGTCCAAGTGGTCCAAATAAAC] [+] EMBL CA330895 [ TCAAAGCCCGGAACCAGTTGGAGCAGTTCAGCCCTCCAGAAATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTGGCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGAAGATGTGGAGGTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGGCAGATGCCGTATACCAACTTTATTTTTGCGGAGTCCTAAACGCTGCAAGTTTTGCTGTAATTGCTGTCCTGGAATGCGGGGATGTGGTGTCTGCTGCAGGTTCTGATCACTCCTGATGTCACCAACTATAACACGAGATTATTTTTTGTCAACTTGAAAGTAATAATTGACACTGTGATTTTCAATATCTGATGTTCCTTCTGTACTTTGTCATTCTGCCATGACGTCCATCAGCCTTCACGGAGCTGAAATGTTTGCAGTTATGTCCAAGTGATCCAAATAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2573#0 AAGTCAGAGGAGCTGACAAGAGTCACCTGCACAAGAGTCAAAGCCCGGAACCAGCTGGAG 60 consensus_2573#1 --GTCAGAGGAGCTGACAAGAGTCACCTGCACAAGAGTCAAAGCCCGGAACCAGTTGGAG 58 **************************************************** ***** consensus_2573#0 CAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTG 120 consensus_2573#1 CAGTTCAGCCCTCCAGAGATGAAGACCTTCAGTGTTGCTGTTGTTGCGGCCGTCCTGCTG 118 ************************************************************ consensus_2573#0 GCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAATTGGAAGATGTGGAG 180 consensus_2573#1 GCCCTCATTTGTCTCCAGGAGAGCTCTGCTCTTCCTCTCAGTGAAGTGGAAGATGTGGAG 178 ********************************************* ************** consensus_2573#0 GTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGG 240 consensus_2573#1 GTGCCAGTGATGGATGATAATGGAGCTGCTGTATATGAAGAGATGCCAGTGGACTCCTGG 238 ************************************************************ consensus_2573#0 AAGATGCCGTATACCCAC-ATGCGCCATCATCGTCCTGCACGCTGCAGGTTTTGCTGTCG 299 consensus_2573#1 AAGATGCCGTATACCAACTATATACAAGCGGAGTCCTAAACGCTGCAGGTTTTGCTGTAA 298 *************** ** ** * * * ***** ******************* consensus_2573#0 ATGCTGTCCTGGAATGCAGGGATGTGGAATCTGTTGCGATTTCTAATTATTCTTTCAGTT 359 consensus_2573#1 TTGCTGCCCTGGAATGCGGGGATGTGGTGCCTGCTGCGGGTTCTGATCACTCC--CGATG 356 ***** ********** ********* *** **** **** ** * ** * * consensus_2573#0 TTATCAGTTATCA------GTTTTTGCAAGAAAAAA-GAAACTTTCAAGAAAC-TGATAT 411 consensus_2573#1 TCACCAACTATAACACGAGATTATTATTTGTAAACTTGAAAGTAATGAGTGACACTGTGG 416 * * ** *** * ** ** * *** **** * ** ** * consensus_2573#0 TTTTCAGGATAT-ATATTTTT-----ATTTCAATATTTGGCTATAATAATCATCAGTCAT 465 consensus_2573#1 TTTTCAATATCTGATGTTCCTTCTGGACTTTGTCATTCTGCCATGACGTCCATCAGCC-T 475 ****** ** * ** ** * * ** *** ** ** * ****** * * consensus_2573#0 TCATTGTGGTGAAATGTTTTCATATATAGAAAAGTGA---AAATTAATTTCCATCAACTA 522 consensus_2573#1 TCACGGAGCTGAAATGTTTGCAGTTATGTCCAAGTGGTCCAAATAAAC------------ 523 *** * * ********** ** *** ***** **** ** consensus_2573#0 TTGTTTGAACGTGTTCTTTCATTCATGTTTGCATGTGAAAATATAGTTTCAATGTATCAA 582 consensus_2573#1 ------------------------------------------------------------ consensus_2573#0 CTGATTTTCTTTCTGGGTGTTTTCCTGCTTTACAAACAC 621 consensus_2573#1 --------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |