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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence
[TTGTTTNTCCCTAAAAGGCAGAATNNNAGGGNNTGACNNNNAANAAGNGANAGTGGNAAGGAAAAATNAATNAATNAATNAATCAACCATTATTTATACAGTGTCTTTTACAATCAGAATTGTTTCAAGGTGCTTTCAGGAATCCCAGGGGCTAACCCCTGACAAGCAACAGTGGCAAGGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCATGTAGGGGGACTGATGGCCGGCTGGGTAGAGAGAGAGGAGAAGGGGGAGGACAGGTTGGTAGAACAGGCAGAAATCAAAGATATACATTAATAGTACAAGCTGCTGGTATAAGAGTGGGTCAGCAGTTTCAGAGGTCGGCAGGCCAGCATACAGCTATAAAGGCAGCTCGACCTGTTGATGGATACGTGAGGGGGAGAAGCAGAGAAACTATACGGGAAACAACATCATCAATGATCTACTCGGAGGAGAGAGGAGAGGCAGCCATGACCCAGTGGGGTGACAAAGGCCTGTCAGGTGATCATGTTTCTGGACCCCGGCAGCCTCGGCCTATAGCAGCATAACTAATAATTAGACAACCCCTCTAAGTATGATAATTTGTCTGTCTAGGATAGTAACTGCAACTACAGAATTAATGGGAATAAGAGTGATCATGTGATCTAATCTATCCCTGAGAGGACCAAAACACATGACCTCAGTTTTTCCTGAGTTAAGGACGAGGAAATTTGAAGACAT]
[+] EMBL CA588381 [TTGTTTNTCCCTAAAAGGCAGAATNNNAGGGNNTGACNNNNAANAAGNGANAGTGGNAAGGAAAAATNAATNAATNAATNAATCAACCATTATTTATACAGTGTCTTTTACAATCAGAATTGTTTCAAGGTGCTTTCAGGAATCCCAGGGGCTAACCCCTGACAAGCAACAGTGGCAAGGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCATGTAGGGGGACTGATGGCCGGCTGGGTAGAGAGAGAGGAGAAGGGGGAGGACAGGTTGGTAGAACAGGCAGAAATCAAAGATATACATTAATAGTACAAGCTGCTGGTATAAGAGTGGGTCAGCAGTTTCAGAGGTCGGCAGGCCAGCATACAGCTATAAAGGCAGCTCGACCTGTTGATGGATACGTGAGGGGGAGAAGCAGAGAAACTATACGGGAAACAACATCATCAATGATCTACTCGGAGGAGAGAGGAGAGGCAGCCATGACCCAGTGGGGTGACAAAGGCCTGTCAGGTGATCATGTTTCTGGACCCCGGCAGCCTCGGCCTATAGCAGCATAACTAATAATTAGACAACCCCTCTAAGTATGATAATTTGTCTGTCTAGGATAGTAACTGCAACTACAGAATTAATGGGAATAAGAGTGATCATGTGATCTAATCTATCCCTGAGAGGACCAAAACACATGACCTCAGTTTTTCCTGAGTTAAGGACGAGGAAATTTGAAGACAT]
consensusID : consensus_2579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 604 fasta sequence
[TTATTTATATAGCGTCTTTTACGATCAAAATTGTTTCAAGGCGCTTTCCAGAATCCCAGGGCCTAACCCCAGACAAGCAACAATGGCAAGGAAAAACTCCCC-TTTAACAGGAAGAAACCTTGAGAAGGACCAAGCTCATGTAGGGGGACCCTCCTGCTGATGGCCGGCTGGGTAGAGAGAGAGGAGAGAGAGAAGGAGAGGGCGAAAGAGAGGAGAACACTGCATCACATCAGGAACTCCATGGGTACCTGATGACTACAGGCTCAAATTGACTGTTGCCTGTAAACAAAGTCATGCTGCCTATCAAGACCTAGTTGGCTTGACTTATGGAGGTGTTCTTGAAAAGGTGAAGAGAATAAGAACTGAAGGATGACTGTGGTGACATATAGGTAGATGTCTCATATAAGTCACCAAAGGTCAGCTGTGAATAGTGGTGACTTCAGCAGGCCACACAAGGGTGTGATATCCTGACTAAAATATTTTGTAATGAGTTACTTGAAAGGGAAGGGTCTATCCCTTTGACTATCTAAACAGGAGGGAAAATCCATGCTTGGAAGAAACCTCAAAGTATGGTGGAGCCGGGACCACTTGGAGCACCTGTTGT]
[-] EMBL CA329188 [TTATTTATATAGCGTCTTTTACGATCAAAATTGTTTCAAGGCGCTTTCCAGAATCCCAGGGCCTAACCCCAGACAAGCAACAATGGCAAGGAAAAACTCCCCTTTTAACAGGAAGAAACCTTGAGAAGGACCAAGCTCATGTAGGGGGCCCCTCCTGCTGATGGCCGGCTGGGTAGAGAGAGAGGAGAGAGAGAAGGAGAGGGCGAAAGAGAGGAGAACACTGCATCACATCAGGAACTCCATGGGTACCTGATGACTACAGGCTCAAATTGACTGTTGCCTGTAAACAAAGTCATGCTGCCTATCAAGACCTAGTTGGCTTGACTTATGGAGGTGTTCTTGAAAAGGTGAAGAGAATAAGAACTGAAGGATGACTGTGGTGACATATAGGTAGATGTCTCATATAAGTCACCAAAGGTCAGCTGTGAATAGTGGTGACTTCAGCAGGCCACACAAGGGTGTGATATCCTGACTAATATATTTTGTAATGAGTTACTTGAAAGTGAAGGGTCTATCCCTTTGACTATCTAAACAGGAGGGAAAATCCATGCTTGGAAAAAACCTCAAAGTATGGTGGAGCCGGGACCACTTGGAGCACCTGTT ]
[-] EMBL CA331039 [ TGGCAAGGAAAAACTCCCC TTTAACAGGAAGAAACCTTGAGCAGGACCAAGCTCATGTAGGGGGACCCTCCTGCTGATGGCCGGCTGGGTAGAGAGAGAGGAGAGAGAGAAGGAGAAGGCGAAAGAGAGGAGAACACTGCATCACATCAGGAACTCCATGGGTACCTGATGACTACAGGCTCAAATTGACTGTTGCCTGTAAACAAAGTCATGCTGCCTATCAAGACCTAGTTGGCTTGACTTATGGAGGTGTTCTTGAAAAGGTGAAGAGAATAAGAACTGAAGGATGACTGTGGTGACATATAGGTAGATGTCTCATATAAGTCACCAAAGGTCAGCTGTGAATAGTGGTGACTTCAGCAGGCCACACAAGGGTGTGATATCCTGACTAAAATATTTTGTAATGAGTTACTTGAAAGGGAAGGGTCTATCCCTTTGACTATCTAAACAGGAGGGAAAATCCATGCTTGGAAGAAACCTCAAAGTATGGTGGAGCCGGGACCACTTGGAGCACCTGTTGT]
consensusID : consensus_2579#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 509 fasta sequence
[CTGTGGAACTGATGAGTTTATGCACATTTATGCAAATACATTCAATCAATCAATCTTTATATAGCGTCTGTTACAATTGTTTGTAGGTGCTTAACAGAATCCCAGGGCCTGACCCCCCAACAAGCAACTGTGGCAAGGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCGTGTAGGGGGACCCTCCTGCTGATGGCCGGCTGATTTAAGATTCTCTTCTTGAAAAGTACAAAGATCTGCTTTTAATTCCACCATCAGGTTCACTCGAGCACCCAAACGCGCACACAAAGACTGCACAGGTTTTTCAGACCCTTTAAGACTAAGACCAAAAAATATTTTTGCCCACGGCTTCTGGTTCTCACAGTCTCCAGTCTCTGTAGGAATGCTAAGTATCCAGGAG-CCCCCCCGGCGGAGCAGCCGATGGTAAGGACGGTGATTTAAGGCAGCCCTGGTTGTTCCCATGTCACACACTCTGAAAGAGGGTACGTGGAGGCG]
[+] EMBL CA331179 [CTGTGGAACTGATGAGTTTATGCACATTTATGCAAATACATTCAATCAATCAATCTTTATATAGCGTCTGTTACAATTGTTTGTAGGTGCTTAACAGAATCCCAGGGCCTGACCCCCCAACAAGCAACTGTGGCAAGGAAAAACT CCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCGTGTAGGGGGACCCTCCTGCTGATGGCCGGCTGATTTAAGATTCTCTTCTTGAAAAGTACAAAGATCTGCTTTTAATTCCACCATCAGGTTCACTCGAGCACCCAAACGCGCACACAAAGACTGCACAGGTTTTTCAGACCCTTTAAGACTAAGACCAAAAAATATTTTTGCCCACGGCTTCTGGTTCTCACAGTCTCCAGTCTCTGTAGGAATGCTAAGTATCCAGGAGCCCCCCCCGGCGGAGCAGCCGATGGTAAGGACGGT ]
[+] EMBL CA329488 [ GGTACTGATGAGCTTATGCACATTTATGCAAATACATTCAATCAATCAATCTTTATATAGCGTCTGTTACAATTGTTTGTAGGTGCTTAACAGAATCCCAGGGCCTGACCCCCCAACAAGCAACTGTGGCAAGGAAAAACTCCCCTTTAACAGGAAGAAACCTCGAGCAGGACCAGGCTCGTGTAGGGGGACCCTCCTGCTGATGGCCGGCTGATTTAAGATTCTCTTCTTGAAAAGTACAAAGATCTGCTTTTAATTCCACCATCAGGTTCACTCGAGCACCCAAACGCACACACAAAGACTGCACAGGTTTTTCAGACCCTTTAAGACTAAGACCAAAAAATATTTTTGCCCACGGCTTCTGGTTCTCACAGTCTCCAGTCTCTGTAGGAATGCTAAGTATCCAGGAG CCCCCCCGGCGGAGCAGCCGATGGTAAGGACGGTGATTTAAGGCAGCCCTGGTTGTTCCCATG ]
[+] EMBL CA331504 [ ACTGATGAGTTTATGCACATTTACCCAAATACATTCAATCAATCAATCTTTATATAGCGTCTGTTACAATTGTTTGTAGGTGCTTAACAGAATCCCAGGGCCTGACCCCCCAACAAGCAACTGTGGCAAGGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCGTGTAGGGGGACCCTCCTGCTGATGGCCGGCTGATTTAAGATTCTCTTCTTGAAAAGTACAAAGATCTGCTTTTAATTCCACCATCAGGTTCACTCGAGCACCCAAACGCGCACACAAAGACTGCACAGGTT ]
[+] EMBL CA329625 [ CTGATGAGTTTATGCACATTTATGCAAATACATTCAATCAATCAATCTTTATATAGCGTCTGTTACAATTGTTTGTAGGTGCTTAACAGAATCCCAGGGCCTGACCCCCCAACAAGCAACTGTGGCAAGGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCGTGTAGGGGGACCCTCCTGCTGATGGCCGGCTGATTTAAGATTCTCTTCTTGAAAAGTACAAAGATCTGCTTTTAATTCCACCATCAGGTTCACTCGAGCACCCAAACGCACACACAAAGACTGCACAGGTTTTTCAGACCCTTTAAGACTAAGACCAAAAAATATTTTTGCCCACGGCTTCTGGTTCTCACAGTCTCCAGTCTCTGTAGGAATGCTAAGTATCCAGGAG CCCCCCCGGCGGAGCAGCCGATGGTAAGGACGGTGATTTAAGGCAGCCCTGGTTGTTCCCATGTCACACACTCTGAAAGAGGGTACGTGGAGGCG]
consensusID : consensus_2579#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence
[CACGACCCAAACGATGGTTTATTGTTCAAAAAATCAAAATCAATCTTTATTTATATAGCGTCTTATACAATCAAAATTGTTTCAAGGCGCTTTCCAAAATCCCAGGGCCTGACCCCAAACAAGCAACAGTGGCAAGGAAAAACTCCCCTTTAACAGGAAAAAACCTTGAGCAGGACCAGGCTCATGTAGGGGGACCCTCCTGCTGATGGCCGGCTGGGTAAAAAAAGAGGAAAGGAGGGAGGACAGGTAAAGGATAAAATAGGTAGGAGAGGAAAGGGGTAA]
[+] EMBL CA331309 [CACGACCCAAACGATGGTTTATTGTTCAAAAAATCAAAATCAATCTTTATTTATATAGCGTCTTATACAATCAAAATTGTTTCAAGGCGCTTTCCAAAATCCCAGGGCCTGACCCCAAACAAGCAACAGTGGCAAGGAAAAACTCCCCTTTAACAGGAAAAAACCTTGAGCAGGACCAGGCTCATGTAGGGGGACCCTCCTGCTGATGGCCGGCTGGGTAAAAAAAGAGGAAAGGAGGGAGGACAGGTAAAGGATAAAATAGGTAGGAGAGGAAAGGGGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2579#0 TTGTTTNTCCCTAAAAGGCAGAATNNNAGGGNNTGACNNNNAANAAGNGANAGTGGNAAG 60
consensus_2579#3 ------------------------------------CACGACCCAAACGATGGTTTATTG 24
consensus_2579#1 ------------------------------------------------------------
consensus_2579#2 --------------------------------------CTGTGGAACTGATGAGTTTATG 22
consensus_2579#0 GAAAAATNAATNAATNAATN-AATCAACCATTATTTATACAGTGTCTTTTACAATCAGAA 119
consensus_2579#3 T-----TCAAAAAATCAA---AATCAATCTTTATTTATATAGCGTCTTATACAATCAAAA 76
consensus_2579#1 ------------------------------TTATTTATATAGCGTCTTTTACGATCAAAA 30
consensus_2579#2 CACATTTATGCAAATACATTCAATCAATCAATCTTTATATAGCGTCTGTTAC------AA 76
* ****** ** **** *** **
consensus_2579#0 TTGTTTCAAGGTGCTTTCAGGAATCCCAGGGGCTAACCCCT-GACAAGCAACAGTGGCAA 178
consensus_2579#3 TTGTTTCAAGGCGCTTTCCAAAATCCCAGGGCCTGACCCCA-AACAAGCAACAGTGGCAA 135
consensus_2579#1 TTGTTTCAAGGCGCTTTCCAGAATCCCAGGGCCTAACCCCA-GACAAGCAACAATGGCAA 89
consensus_2579#2 TTGTTTGTAGGTGCTTAACAGAATCCCAGGGCCTGACCCCCCAACAAGCAACTGTGGCAA 136
****** *** **** ********** ** ***** ********* ******
consensus_2579#0 GGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCATGTAGGGGGAC 238
consensus_2579#3 GGAAAAACTCCCCTTTAACAGGAAAAAACCTTGAGCAGGACCAGGCTCATGTAGGGGGAC 195
consensus_2579#1 GGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGAAGGACCAAGCTCATGTAGGGGGAC 149
consensus_2579#2 GGAAAAACTCCCCTTTAACAGGAAGAAACCTTGAGCAGGACCAGGCTCGTGTAGGGGGAC 196
************************ ********** ******* **** ***********
consensus_2579#0 --------TGATGGCCGGCTGGGTAGAGAGAGAG-----GAGAAGGGGGAGGACAGGTT- 284
consensus_2579#3 CCTCCTGCTGATGGCCGGCTGGGTAAAAAAAGAG-----GAAAGGAGGGAGGACAGGTAA 250
consensus_2579#1 CCTCCTGCTGATGGCCGGCTGGGTAGAGAGAGAG-----GAGAGAGAGAAGGAGAGGGCG 204
consensus_2579#2 CCTCCTGCTGATGGCCGGCTGATTTAAGATTCTCTTCTTGAAAAGTACAAAGATCTGCTT 256
************* * * * ** * * ** *
consensus_2579#0 --GGTAGAACAGGCAGAA-ATCAAAG-ATATACATTAATAGTACAAGCTGCTGGTATAA- 339
consensus_2579#3 AGGATAAAATAGGTAGGAGAGGAAAG-GGGTAA--------------------------- 282
consensus_2579#1 AAAGAGAGGAGAACACTGCATCACATCAGGAACTCCATGGGTACCTGATGACTACAGGCT 264
consensus_2579#2 TTAATTCCACCATCAGGT--TCACTCGAGCACCCAAACGCGCACACAAAGACTGCAC--- 311
* *
consensus_2579#0 -GAGTGGGTCAGCAGTTTCAGAGGTCGGCAGGCCAGCATACAGCTATAAAGGCAGCTCGA 398
consensus_2579#3 ------------------------------------------------------------
consensus_2579#1 CAAATTGACTGTTGCCTGTAAACAAAGTCATGCT-GCCTATCAAGACCTAGTTGGCTTGA 323
consensus_2579#2 -AGGTTTTTCAGACCCTTTAAGACTA---AGACCAAAAAATATTTTTGCCCACGGCTTCT 367
consensus_2579#0 CCTGTTGATGGATACGTGAGGGGGAGAAGCAGAGAAACTATACGGGAAACAACATCATCA 458
consensus_2579#3 ------------------------------------------------------------
consensus_2579#1 CTTATGGAGGTGTTCTTGAAAAGGTGAAGAGAATAAG--AACTGAAGGATGACTGTGGTG 381
consensus_2579#2 GGTTCTCACAGTCTCCAGTCTCTGTAGGAATGCTAAG-TATCCAGGAGCCCCCCCGGCGG 426
consensus_2579#0 ATGAT---CTACTCGGAGGAGAGAGGAGAGGCAGCCATGACCCAGTGGGGTGACAAAGGC 515
consensus_2579#3 ------------------------------------------------------------
consensus_2579#1 AC-AT---ATAGGTAGATGTCTCATATAAGTCACCAAAGGTCAGCTGTGAATAGTGGTGA 437
consensus_2579#2 AGCAGCCGATGGTAAGGACGGTGATTTAAGGCAGCCCTGGTT-GTTCCCATGTCACACAC 485
consensus_2579#0 CTGTCAGGTGATCATGTTTCTGGACCCCGGCAGCCTCGGCCTATAGCAGCATAACTAATA 575
consensus_2579#3 ------------------------------------------------------------
consensus_2579#1 CT-TCAGCAGGCCACA---CAAGGGTGTGATATCCT--GACTAAA-----ATATTTTGTA 486
consensus_2579#2 TCTGAAAGAGGGTACG---TGGAGGCG--------------------------------- 509
consensus_2579#0 ATTAGACAACCCCTCTAAGTATGATAATTTGTCTGTCTAGGATAGTAACTGCAACTACAG 635
consensus_2579#3 ------------------------------------------------------------
consensus_2579#1 ATGAGTTA----CTTGAAAGGGAAGGGTCTATCCCTTTGACTATCTAAACAGGAGGG-AA 541
consensus_2579#2 ------------------------------------------------------------
consensus_2579#0 AATTAATGGGAATAAGAGTGATCATGTGATCTAATCTATCCCTGAGAGGACC-AAAACAC 694
consensus_2579#3 ------------------------------------------------------------
consensus_2579#1 AATCCATGCT--TGGAAGAAACCTCAAAGTATGGTGGAGCC--GGGACCACTTGGAGCAC 597
consensus_2579#2 ------------------------------------------------------------
consensus_2579#0 ATGACCTCAGTTTTTCCTGAGTTAAGGACGAGGAAATTTGAAGACAT 741
consensus_2579#3 -----------------------------------------------
consensus_2579#1 CTGTTGT---------------------------------------- 604
consensus_2579#2 -----------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |