These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 819 fasta sequence [CACTGCGGAACAGTAGGCGAGTGGAGCACTTATTATCCTGGGCAACTTTCATACGCTTGGA-AGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTATCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAGCGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAGAACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAAATGCACCCTGACGAGCAGAGGTCGCACCGTCAACGTTAAATCCGCTACATGGAAGGTGCTGCACTGCTCAGGACAAGTGCGTGTGTATGAGAACCACACTGAGCCCAGT] [+] EMBL CA846205 [CACTGTGGAACAGTAGGCGAGTGGAGCACTTATTATCCTGGGCAACTTTCATACGCTTGGA AGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTATCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAGCGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAGAACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAAATGCACCCTGACGAGCAGAGGTCGCACCGTCAACGTTAAATCCGCTACATGGAAGGTGCTGCACTGCTCAGGACAAGTGCGTGTGTATGAGAACCACACTGAGCCCAGT] [+] EMBL CA588648 [ GCGGTAAAGTAGGCGAGTGGAGCACTTATTATCCTGGGCAACTCCTTTACGCTTGGA AGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTATCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAGCGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAGAACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAAATGCACCCTGACGAGCAGAGGTCGCACCGTCAACGTTAAATCCGCTACATGGAAGGTGCTGCACTGC ] [+] EMBL CA589119 [ AACAGTAGGCGAGTGGAGCACTTATTATCCTGGGCAACTTTCATACGCTTGGA AGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAAGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGC ] [+] EMBL FR0058318 [ AGTGGAGCACTTATTATTTTTTTCAACTTTCATACGCTTGGAGGGGGGGATGCAACGCACTTAACAG TTCTCCCACGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGTAGGAAGGAGAAGTCGATAGA ] [+] EMBL CA591143 [ GTGGAGCACTTATTATCCTGGGCAACTTTCATACGCTTGGA AGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCCGAGGGGGTCTACCAGCTGGCTCAGGAACTGCCCCTGGCCCACAGGATCAGCTTCAGTCTGGACAAAGGCTCCCTAATGAGACTCGCCATCAGCTAACTGGGCATGAAGAAACTT ] [+] EMBL FR0058423 [ CTGGGCAACTTTCATACGCTTGGA AGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTATTGTGTATTTCTCGACGGGGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCAAGCCGTTGCGTCCTGACATGGACACGGGAATTGCACCAGAAAAGAAAAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTC ] consensusID : consensus_2582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 640 fasta sequence [TGTTTGCTGCAGCCGCCGACAGGCCAGCAGCTGATCGGCCTCAGTAAACACTCCGGACGGAGGGATGCCTCTTCTCGTGTGTGTCGTGGGAGCAGAACCGGTTAATGACCAAGCGCTCGTCTCTCGCAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATGTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTATCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAGCGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAGAACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAAATGCACCCTGACGAGCAGAGGTCGCACC] [+] EMBL CA589367 [TGTTTGCTGCAGCCGCCGACAGGCCAGCAGCTGATCGGCCTCAGTAAACACTCCGGACGGAGGGATGCCTCTTCTCGTGTGTGTCGTGGGAGCAGAACCGGTTAATGACCAAGCGCTCGTCTCTCGCAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTATCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAGCGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAGAACAGGCTCCAAAAAGGCCAAGGAGCCA ] [+] EMBL BU806881 [ GCAGCTGATCGGCCTCAGTAAACACTCCGGACGGAGGGATGCCTCTTCTCGTGTGTGTCGTGGGAGCAGAACCGGTTAATGACCAAGCGCTCGTCTCTCGCAGGGTGAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATGTCGGCGCGGCAAGGAGTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAGTCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCTGAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTCCTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTATCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAGCGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAGAACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAAATGCACCCTGACGAGCAGAGGTCGCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2582#0 CACTGCGGAACAGTAGGCGAGTGGAGCACTTATTATCCTGGGCAACTTTCATACGCTTGG 60 consensus_2582#1 ------------------------------------------------------------ consensus_2582#0 AAGTCGTATGCAACGCACTTAACAGTTTTTTTTAGGACTTAGTCAGAAAGCTCGGGATTA 120 consensus_2582#1 ------------------------------------------------TGTTTGCTGCAG 12 * * * consensus_2582#0 TTGTGTATTTCTCGACGG--GGCCGGACACAGTTTGATACCCAGAGAGAGACTCAACTCA 178 consensus_2582#1 CCGCCGACAGGCCAGCAGCTGATCGGCCTCAGTAAACACTCCGGACGGAGGGATGCCTCT 72 * * * * * * *** * **** ** ** *** *** consensus_2582#0 AGCCGT-TGCGTCCTGACATGGACACGGG--AATT-----GCACCAGAAAAGAAAAGGGT 230 consensus_2582#1 TCTCGTGTGTGTCGTGGGAGCAGAACCGGTTAATGACCAAGCGCTCGTCTCTCGCAGGGT 132 *** ** *** ** * ** ** *** ** * * ***** consensus_2582#0 GAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATCTCGGCGCGGCAAGGA 290 consensus_2582#1 GAGTTCAGAGCGGAGGAAGGAGAAGTCGAGAGATGCCGCGCGATGTCGGCGCGGCAAGGA 192 ******************************************** *************** consensus_2582#0 GTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAG 350 consensus_2582#1 GTCGGAGGTGTTCTACCAGCTGGCTCAGGAACTGCCCCTGCCCCACAGCATCAGCTCCAG 252 ************************************************************ consensus_2582#0 TCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCT 410 consensus_2582#1 TCTGGACAAGGCCTCCATAATGAGACTCGCCATCAGCTACCTGCGCATGAGGAAACTTCT 312 ************************************************************ consensus_2582#0 GAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTC 470 consensus_2582#1 GAACGCTGGTGAGCCCATAACAGGGGAGGAAACGGACCTGGACCTGCAGCTAAATGGTTC 372 ************************************************************ consensus_2582#0 CTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTA 530 consensus_2582#1 CTATCTGAAGGCTCTGGATGGCTTTCTGATGGTGCTATCTGAAGATGGAGACATGATCTA 432 ************************************************************ consensus_2582#0 TCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAG 590 consensus_2582#1 TCTCTCTGAGAACATCATCAAGTGCCTCGGGCTGGCACAGTTTGATCTGACTGGCCACAG 492 ************************************************************ consensus_2582#0 CGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAG 650 consensus_2582#1 CGTGTTTGACTTCATCCATCCCTGCGACCAGGAGGAACTGAGGGAGATGTTGATCCATAG 552 ************************************************************ consensus_2582#0 AACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAA 710 consensus_2582#1 AACAGGCTCCAAAAAGGCCAAGGAGCCAAACACGGAAAGAAGCTTTTTCCTTCGCATGAA 612 ************************************************************ consensus_2582#0 ATGCACCCTGACGAGCAGAGGTCGCACCGTCAACGTTAAATCCGCTACATGGAAGGTGCT 770 consensus_2582#1 ATGCACCCTGACGAGCAGAGGTCGCACC-------------------------------- 640 **************************** consensus_2582#0 GCACTGCTCAGGACAAGTGCGTGTGTATGAGAACCACACTGAGCCCAGT 819 consensus_2582#1 ------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |