These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 654 fasta sequence [GTTGGGCAACAAGCAGCAAACGTATCGGTGGAAGCGGCCGTCAGCCGAACCGTGAGAGCCGCCAGCGCCACCTCCAGCTCCGCGTTGATGCCAGTGCGCCTCTCTTATGCTGTCGAGGCGGTTTCGCCTTGATTTGAGCTGTTTTTCCAGAGACGGAAGCTGATGTGAGCTACGCAGGACTTCGGTTCCGACGCGGTTTGTTAGCATTAGCAGCCCCGAACTCCGCGCAGCTTGTTTTGGACATTCCGTGGAGCTCTCCAGAACAGTCCACCAGCGATGGCGGCTGCAGGGGCGAGCGGGAAGACCTACTCGTTTAAGGCGGTGCTGTTGGGGGAAGGTTGCGTCGGGAAGACGTCGCTGGTCCTTCGGTACTGCGAGAACAAGTTCAACGACAAACACATCACAACGCTACAGGCATCGTTCCTCAACAAGAAGCTCAACATCACAGGAAAGAGAGTCAATCTGGCCATCTGGGACACAGCGGGTCAGGAGCGCTTCCACGCGCTTGGTCCCATCTACTACAGAGACTCCAACGGCGCCATCCTGGTGTACGACGTCACGGACGAAGACTCCTTTCAGAAGGTGAAGAACTGGGTGAAGGAACTGAGGAAAATGTTGGGCAATGACATTTGTTTATGTATAGTAGGGAATAAA] [+] EMBL CA590498 [GTTGGGCAACAAGCAGCAAACGTATCGGTGGAAGCGGCCGTCAGCCGAACCGTGAGAGCCGCCAGCGCCACCTCCAGCTCCGCGTTGATGCCAGTGCGCCTCTCTTATGCTGTCGAGGCGGTTTCGCCTTGATTTGAGCTGTTTTTCCAGAGACGGAAGCTGATGTGAGCTACGCAGGACTTCGGTTCCGACGCGGTTTGTTAGCATTAGCAGCCCCGAACTCCGCGCAGCTTGTTTTGGACATTCCGTGGAGCTCTCCAGAACAGTCCACCAGCGATGGCGGCTGCAGGGGCGAGCGGGAAGACCTACTCGTTTAAGGCGGTGCTGTTGGGGGAAGGTTGCGTCGGGAAGACGTCGCTGGTCCTTCGGTACTGCGAGAACAAGTTCAACGACAAACACATCACAACGCTACAGGCATCGTTCCTCAACAAGAAGCTCAA ] [+] EMBL BU804807 [ GGCAACAAGCAGCAAACGTATCGGTGGAAGCGGCCGTCAGCCGAACCGTGAGAGCCGCCAGCGCCACCTCCAGCTCCGCGTTGATGCCAGTGCGCCTCTCTTATGCTGTCGAGGCGGTTTCGCCTTGATTTGAGCTGTTTTTCCAGAGACGGAAGCTGATGTGAGCTACGCAGGACTTCGGTTCCGACGCGGTTTGTTAGCATTAGCAGCCCCGAACTCCGCGCAGCTTGTTTTGGACATTCCGTGGAGCTCTCCAGAACAGTCCACCAGCGATGGCGGCTGCAGGGGCGAGCGGGAAGACCTACTCGTTTAAGGCGGTGCTGTTGGGGGAAGGTTGCGTCGGGAAGACGTCGCTGGTCCTTCGGTACTGCGAGAACAAGTTCAACGACAAACACATCACAACGCTACAGGCATCGTTCCTCAACAAGAAGCTCAACATCACAGGAAAGAGAGTCAATCTGGCCATCTGGGACACAGCGGGTCAGGAGCGCTTCCACGCGCTTGGTCCCATCTACTACAGAGACTCCAACGGCGCCATCCTGGTGTACGACGTCACGGACGAAGACTCCTTTCAGAAGGTGAAGAACTGGGTGAAGGAACTGAGGAAAATGTTGGGCAATGACATTTGTTTATGTATAGTAGGGAATAAA] [+] EMBL CA590707 [ GGTGGAAGCGGCCGTCAGCCGAACCGTGAGAGCCGCCAGCGCCACCTCCAGCTCCGCGTTGATGCCAGTGCGCCTCTCTTATGCTGTCGAGGCGGTTTCGCCTTGATTTGAGCTGTTTTTCCAGAGACGGAAGCTGATGTGAGCTACGCAGGACTTCGGTTCCGACGCGGTTTGTTAGCATTAGCAGCCCCGAACTCCGCGCAGCTTGTTTTGGACATTCCGTGGAGCTCTCCAGAACAGTCCACCAGCGATGGCGGCTGCAGGGGCGAGCGGGAAGACCTACTCGTTTAAGGCGGTGCTGTTGGGGGAAGGTTGCGTCGGGAAGACGTCGCTGGTCCTTCGGTACTGCGAGAACAAGTTCAACGACAAACACGTCACAACGCTACAGGCATCGTTCCTCAACAAGAAGCTCAACATCACAGGAAAGAGAGTCAATCTGGCCATCTGGGACACAGCGGGTCAGGAGCGCTTCCACGCGCTTGGTCCCATCTACTACAGAGACTCCAACGGCGCCATCCTGGTGTACGACGTCACGGACGAAGACTCCTTTCAGAAGGTGAAGAACTGGGTGAAGGAACTGAGGAAAATGTTTGGCAATGACATTTGTTTATGTATA ] [+] EMBL BU808190 [ GGTGGAAGCGGCCGTCAGCCGAACCGTGAGAGCCGCCAGCGCCACCTCCAGCTCCGCGTTGATGCCAGTGCGCCTCTCTTATGCTGTCGAGGCGGTTTCGCCTTGATTTGAGCTGTTTTTCCAGAGACGGAAGCTGATGTGAGCTACGCAGGACTTCGGTTCCGACGCGGTTTGTTAGCATTAGCAGCCCCGAACTCCGCGCAGCTTGTTTTGGACATTCCGTGGAGCTCTCCAGAACAGTCCACCAGCGATGGCGGCTGCAGGGGCGAGCGGGAAGACCTACTCGTTTAAGGCGGTGCTGTTGGGGGAAGGTTGCGTCGGGAAGACGTCGCTGGTCCTTCGGTACTGCGAGAACAAGTTCAACGACAAACACATCACAACGCTACAGGCATCGTTCCTCAACAAGAAGCTCAACATCACAGGAAAGAGAGTCAATCTGGCCAT ] [+] EMBL FR0063656 [ AAGCGGCCGTCAGCCGAACCGTGAGAGCCGCCAGCGCCACCTCCAGCTCCGCGTTGATGCCAGGGCGCCTCTCTTATGCTGTCGAGGCGGTTTCGCCTTGATTTGAGCTGTTTTTCCAGAGACGGAAGCTGATGTGAGCTACGCAGGACTTCGGTTCCGACGCGGTTTGTTAGCATTAGCAGCCCCGAACTCCGCGCAGCTTGTTTTGGACATTCCGGGGAGCTCTCCAGAACAGTCCACCAGCGATGGCGGCTGCATGTGCGAGC ] [+] EMBL FR0060494 [ CCGTCAGCCGAACCGTGAGAGCCGCCAGCGCCACCTCCAGCTCCGCGTTGATGCCAGTGCGCCTCTCTTATGCTGTCGAGGCGGTTTCGCCTTGATTTGAGCTGTTTTTCCAGAGACGGAAGCTGATGTGAGCTACGCAGGACTTCGGTTCCGACGCGGTTTGTTAGCATTAGCAGCCCCGAACTCCGCGCAGCTTGTTTTGGACATTCCGTGGAGCTCTCCAGAACAGTCCACCAGCGATGGCGTCTGCAGGGGCGAGCGGGAAGACCTACTCGTTTAAGGCGGTGCTGTTGGGGGAAGGTTGCGTCGGGAAGACGTCGCTGTTCCTTCGGTACTGCGAGAACAAGTTCAACGACAAACACATCACAACGCTTACAGCTTCGTTCCTCAAC AGGAGCTCAA ] [+] EMBL FR0060174 [ GTGCGCCTCTCTTATGCTGTCGAGGCGGTTTCGCCTTGATTTGAGCTGTTTTTCCAGAGACGGAAGCTGATGTGAGCTACGCAGGACTTCGGTTCCGACGCGGTTTGTTAGCATTAGCAGCCCCGAACTCCGCGCAGCTTGTTTTGGACATTCCGTGGAGCTCTCCAGAACAGTCCACCAGCGATGGCGGCTGCAGGGGCGAGCGGGAAGACCTACTCGGTTAAGGCGG ] consensusID : consensus_2592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [GGTGGAAGCGGCCGTCAGCCGAACCGTGAGAGCCGCCAGCGCCACCTCCAGCTCCGCGTTGATGCCAGTGCGCCTCTCTTATGCTGTCGAGGCGGTTTCGCCTTGATTTGAGCTGTTTTTCCAGAGACGGAAGCTGATGTGAGCTACGCAGGACTTCGGTTCCGACGCGGTTTGTTAGCATTAGCAGCCCCGAACTCCGCGCAGCTTGTTTTGGACATTCCGTGGAGCTCTCCATAACAGTCCACCAGCGATGGCGGCTGCAGGGGCGAGCGGGAAGACCTACTCGTTTAAGGCGGTGCTGTTGGGGGAAGGTTGCGTCGGGAAGACGTCGGTGGGCCTTCGGGACTGGGAGAACAAGGGTCACGGCGAGGCCGTCGCAGGGGTACGGGGGTCGGTGCTCAGGCGGGCG] [+] EMBL BU804870 [GGTGGAAGCGGCCGTCAGCCGAACCGTGAGAGCCGCCAGCGCCACCTCCAGCTCCGCGTTGATGCCAGTGCGCCTCTCTTATGCTGTCGAGGCGGTTTCGCCTTGATTTGAGCTGTTTTTCCAGAGACGGAAGCTGATGTGAGCTACGCAGGACTTCGGTTCCGACGCGGTTTGTTAGCATTAGCAGCCCCGAACTCCGCGCAGCTTGTTTTGGACATTCCGTGGAGCTCTCCATAACAGTCCACCAGCGATGGCGGCTGCAGGGGCGAGCGGGAAGACCTACTCGTTTAAGGCGGTGCTGTTGGGGGAAGGTTGCGTCGGGAAGACGTCGGTGGGCCTTCGGGACTGGGAGAACAAGGGTCACGGCGAGGCCGTCGCAGGGGTACGGGGGTCGGTGCTCAGGCGGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2592#0 GTTGGGCAACAAGCAGCAAACGTATCGGTGGAAGCGGCCGTCAGCCGAACCGTGAGAGCC 60 consensus_2592#1 --------------------------GGTGGAAGCGGCCGTCAGCCGAACCGTGAGAGCC 34 ********************************** consensus_2592#0 GCCAGCGCCACCTCCAGCTCCGCGTTGATGCCAGTGCGCCTCTCTTATGCTGTCGAGGCG 120 consensus_2592#1 GCCAGCGCCACCTCCAGCTCCGCGTTGATGCCAGTGCGCCTCTCTTATGCTGTCGAGGCG 94 ************************************************************ consensus_2592#0 GTTTCGCCTTGATTTGAGCTGTTTTTCCAGAGACGGAAGCTGATGTGAGCTACGCAGGAC 180 consensus_2592#1 GTTTCGCCTTGATTTGAGCTGTTTTTCCAGAGACGGAAGCTGATGTGAGCTACGCAGGAC 154 ************************************************************ consensus_2592#0 TTCGGTTCCGACGCGGTTTGTTAGCATTAGCAGCCCCGAACTCCGCGCAGCTTGTTTTGG 240 consensus_2592#1 TTCGGTTCCGACGCGGTTTGTTAGCATTAGCAGCCCCGAACTCCGCGCAGCTTGTTTTGG 214 ************************************************************ consensus_2592#0 ACATTCCGTGGAGCTCTCCAGAACAGTCCACCAGCGATGGCGGCTGCAGGGGCGAGCGGG 300 consensus_2592#1 ACATTCCGTGGAGCTCTCCATAACAGTCCACCAGCGATGGCGGCTGCAGGGGCGAGCGGG 274 ******************** *************************************** consensus_2592#0 AAGACCTACTCGTTTAAGGCGGTGCTGTTGGGGGAAGGTTGCGTCGGGAAGACGTCGCTG 360 consensus_2592#1 AAGACCTACTCGTTTAAGGCGGTGCTGTTGGGGGAAGGTTGCGTCGGGAAGACGTCGGTG 334 ********************************************************* ** consensus_2592#0 GTCCTTCGGTACTGCGAGAACAAGTTCAACGACAAACACATCACAACGCTACAGGCATCG 420 consensus_2592#1 GGCCTTCGGGACTGGGAGAACAAGGGTCACGGCGAGGCCGTCGCAGGGGTACGGGGGTCG 394 * ******* **** ********* *** * * * ** ** * *** ** *** consensus_2592#0 TTCCTCAACAAGAAGCTCAACATCACAGGAAAGAGAGTCAATCTGGCCATCTGGGACACA 480 consensus_2592#1 GTGCTCAGGCGGGCG--------------------------------------------- 409 * **** * * consensus_2592#0 GCGGGTCAGGAGCGCTTCCACGCGCTTGGTCCCATCTACTACAGAGACTCCAACGGCGCC 540 consensus_2592#1 ------------------------------------------------------------ consensus_2592#0 ATCCTGGTGTACGACGTCACGGACGAAGACTCCTTTCAGAAGGTGAAGAACTGGGTGAAG 600 consensus_2592#1 ------------------------------------------------------------ consensus_2592#0 GAACTGAGGAAAATGTTGGGCAATGACATTTGTTTATGTATAGTAGGGAATAAA 654 consensus_2592#1 ------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |