These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 628 fasta sequence [CCCGGTACTCTCCAGCACGCACATTCACATCGGCGGGACGTACAATTTCACAGCAAACAAGATGGCAGAAACCGACGTCGACAATGAGCTTCTGGATTATGAAGAAGATGAGGAGCCCCAGGGAGCACCA-GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTTTCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACCAGTGGGTGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGATTAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTTTGGTGGCCTGACCATCAAGAAGGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACATTATTGCCGGAACTCCCGGGCGTATTCGTGCTCTTATCCTCCAGAAGAGCCTCAGCTTGAAGAACATC] [+] EMBL BU806435 [CCCGGTACTCTCCAGCACGCACATTCACATCGGCGGGATTTACAATTTCACAGCAAACAAGATGGCAGAAACCGACGTCGACAATGAGCTTCTGGATTATGAAGAAGATGAGGAGTCCCAGGGAGCACCA GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACCAGTGGATGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGATTAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTTTGGTGGCCTGACCATCAAGAACGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACCTTATTGCCGGAACTCCCGGGCGTATTCGTGCTCTTATCCTCCAGAAGAGCCTCAGCTTGAAa ] [+] EMBL FR0058907 [ TCTCCAGCACGCACATTCACATCGGCGGGACGNACAATTTTACAGCAAACAAGATGGCAGAAACCGACGTCGACAATGAGCTTCTGGATTATCAAGAAGATGAGGAGCCCCAGGGAGCACCA GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGCTTTGAGCACCCTTCAGAAGGGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGGCCAGCC ] [+] EMBL FR0061539 [ ACGCACATTCACATCGGCGGGACGTACAATTTCTCAGCAAACAAGATGGCAGAAACCGACGGGGACAATGAGCTTCTGGATTATGAAGAACATGAGGAGCCCCAGGGAGCACCA GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTTTCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGGGTTTGTGCTGGC ] [+] EMBL BU806223 [ CAGCAAACAAGATGGCAGAAACCGACGTCGACAATGAGCTTCTGGATTATGAAGAAGATGAGGAGCCCCAGGGAGCACCA GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACCAGTGGGTGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGATTAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTTTGGTGGCCTGACCATCAAGAAGGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACATTATTGTCGGAACTCCCGGGCGTATTCGTGCTCTTATCCTCCAGAAGAGCCTCAGCTTGAAGAACATC] [+] EMBL FR0061283 [ GGCAGAAACCGGGGTCGACAATGAGCTTCTGGATTATGAAGAAGATGAGGAGCCCCAGGGAGCACCA GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTTTCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCTGTTGTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTAT ] [+] EMBL FR0062758 [ GCAGAAACCGACGTCGACAATGAGCTTCTGGATTATGAAGAAGATGAGGAGCCCCAGGGAGCACCACGAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTTTCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAAAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACCAG ] [+] EMBL FR0060185 [ TGAGCTTCTGGATTATGAAGAAGATGAGGAGCCCCAGGGAGCACCA GAGAGTGGGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTTTCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACA ] consensusID : consensus_2606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [CTTTATATTCCTTTGGAGCCTAAGATATTGGGAAGAGCCACTTCAGCAATTTTCAGAGGATATTTCAGGCTATCAGTAGTCAGACCAAGAGTAAAATGGATGACAGAGACATCGACAACGAGCTTCTGGATTATGAAGAAGATGAGGAGACCCAGGAAGCTCCAGAGAGTTGGACCCCAGCGAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTCGAATGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACCAGTGGATGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGATTAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTTTGGTGGCCTGGCCATCAGGAAGGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACATTATTGTCGGA] [+] EMBL CA590672 [CTTTATATTCCTTTGGAGCCTAAGATATTGGGAAGAGCCACTTCAGCAATTTTCAGAGGATATTTCAGGCTATCAGTAGTCAGACCAAGAGTAAAATGGATGACAGAGACATCGACAACGAGCTTCTGGATTATGAAGAAGATGAGGAGACCCAGGAAGCTCCAGAGAGTTGGACCCCAGCGAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTCGAATGCGGTTTTGAGCACCCTTCAGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGCCAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACCAGTGGATGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGATTAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTTTGGTGGCCTGGCCATCAGGAAGGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACATTATTGTCGGA] consensusID : consensus_2606#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence [CAAGATGNCATTATATCCGACGTCGACAATGAGCTTCTGGATGGTGAACATATATCACAGCCCCAAGCAGCACCACACACTGTGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGGTGACTGCGGTTTTGAGCACCCTT] [+] EMBL FR0062564 [CAAGATGNCATTATATCCGACGTCGACAATGAGCTTCTGGATGGTGAACATATATCACAGCCCCAAGCAGCACCACACACTGTGACCCCAGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGACTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGGTGACTGCGGTTTTGAGCACCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2606#0 ----------------------------------CCCGGTACTCTCCAGCACGCACATTC 26 consensus_2606#2 ------------------------------------------------------------ consensus_2606#1 CTTTATATTCCTTTGGAGCCTAAGATATTGGGAAGAGCCACTTCAGCAATTTTCAGAGGA 60 consensus_2606#0 ACATCGGCGGGACGTACAATTTCACAGCAAACAAGATGGCA--GAAACCGACGTCGACAA 84 consensus_2606#2 -------------------------------CAAGATGNCATTATATCCGACGTCGACAA 29 consensus_2606#1 TATTTCAGGCTATCAGTAGTCAGACCAAGAGTAAAATGGAT--GACAGAGACATCGACAA 118 ** *** *** ******* consensus_2606#0 TGAGCTTCTGGATTATGAAGAAGATGAGGAGCCCCAGGGAGCACCAGAGAGTGGGACCCC 144 consensus_2606#2 TGAGCTTCTGGATGGTGAACATATATCACAGCCCCAAGCAGCACCACACACTGTGACCCC 89 consensus_2606#1 CGAGCTTCTGGATTATGAAGAAGATGAGGAGACCCAGGAAGCTCCAGAGAGTTGGACCCC 178 ************ **** * ** **** * *** *** * * * ****** consensus_2606#0 AGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTTTCCATTCACAGTTCTGGGTTCAGAGA 204 consensus_2606#2 AGCCAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGA 149 consensus_2606#1 AGCGAACAAGAAGGAGGTTAAAGGGTCCTACGTATCCATTCACAGTTCTGGGTTCAGAGA 238 *** ***************************** ************************** consensus_2606#0 CTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTTGACTGCGGTTTTGAGCACCCTTC 264 consensus_2606#2 CTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGGTGACTGCGGTTTTGAGCACCCTT- 208 consensus_2606#1 CTTTCTCCTGAAACCAGAGTTGCTCCGGGCCATTGTCGAATGCGGTTTTGAGCACCCTTC 298 *********************************** ** ******************* consensus_2606#0 AGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGC 324 consensus_2606#2 ------------------------------------------------------------ consensus_2606#1 AGAAGTGCAACATGAGTGTATTCCCCAAGCTATACTGGGCATGGACATCCTTTGCCAGGC 358 consensus_2606#0 CAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACC 384 consensus_2606#2 ------------------------------------------------------------ consensus_2606#1 CAAGTCGGGTATGGGGAAGACGGCAGTGTTTGTGCTGGCAACCCTGCAGCAGATTGAACC 418 consensus_2606#0 AGTGGGTGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGAT 444 consensus_2606#2 ------------------------------------------------------------ consensus_2606#1 AGTGGATGGTCAGGTCTCTGTCCTTGTAATGTGCCACACTCGAGAGCTGGCCTTCCAGAT 478 consensus_2606#0 TAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTT 504 consensus_2606#2 ------------------------------------------------------------ consensus_2606#1 TAGCAAAGAGTATGAGCGTTTCTCCAAGTACATGCCCACTGTCAAGGTGTCTGTGTTCTT 538 consensus_2606#0 TGGTGGCCTGACCATCAAGAAGGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACATTAT 564 consensus_2606#2 ------------------------------------------------------------ consensus_2606#1 TGGTGGCCTGGCCATCAGGAAGGATGAGGAGGTCCTGAAAAAGAACTGCCCTCACATTAT 598 consensus_2606#0 TGCCGGAACTCCCGGGCGTATTCGTGCTCTTATCCTCCAGAAGAGCCTCAGCTTGAAGAA 624 consensus_2606#2 ------------------------------------------------------------ consensus_2606#1 TGTCGGA----------------------------------------------------- 605 consensus_2606#0 CATC 628 consensus_2606#2 ---- consensus_2606#1 ---- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |