These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 480 fasta sequence [CCAACGAGAACTTCGAGGAGGTCATGAAAGCCCTCGACATCGACTTCGCCACCA-GAAAGATCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGACTCAAAAAAAAAAAAAAAAACCCCGGGGGGGGCC] [+] EMBL FR0057006 [CCAACGAGAACTTCGAGGAGGTCATGAAAGCCCTCGACATCGACTTCGCCACCA GAAAGATCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGGAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGG ] [+] EMBL FR0055602 [ AGGTCATGAAAGCCCTCGACATCAACTTCGCCACCAGGAAAGATCGCGTCCCACCTGCACCAGACACAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAGACTACGAGGTCAACTTCACAATCGGCGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGCTGGNAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAA ] [+] EMBL FR0056712 [ CCTCGACATCGACTTCGCCACCA GAAAGATCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAGTCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAGGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGGGTTGCAAA ] [+] EMBL FR0056993 [ CATCGACTTCGCCACCA GAAAGATCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGACT ] [+] EMBL CA845410 [ TCGACTTCGCCACCA GAAAGATCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACTTCCGTTAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATG ] [+] EMBL FR0056713 [ AGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAGGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGGAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGTAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGAT ] [+] EMBL CA847147 [ CCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGACTCCAAAAAAAAAA ] [+] EMBL FR0056922 [ AACAGTGGATAGAAGGAGACCTCCTTCACCTGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGACTCAAAAAAAAAAAAAAAAACCCCGGGGGGGGCC] consensusID : consensus_2615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [GTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGTTTCTGTTGCCTTTCTTTCAGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGAC] [+] EMBL CA844995 [GTCCAGAAAGGAGACAAGTTCGAGACCCAGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGGAGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACAAGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAGGAGACCTCCTTCACCTGGTTTCTGTTGCCTTTCTTTCAGGAGATCACTGCTCTCGACAAAGTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGTGTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2615#0 CCAACGAGAACTTCGAGGAGGTCATGAAAGCCCTCGACATCGACTTCGCCACCAGAAAGA 60 consensus_2615#1 ------------------------------------------------------------ consensus_2615#0 TCGCGTCCCACCTGCACCAGACAAAGGTGATCGTCCAGAAAGGAGACAAGTTCGAGACCC 120 consensus_2615#1 --------------------------------GTCCAGAAAGGAGACAAGTTCGAGACCC 28 **************************** consensus_2615#0 AGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGG 180 consensus_2615#1 AGACCCTGAGCACGTTCAGAAACTACGAGGTCAACTTCACAATCGGGGAGGAATTTGAGG 88 ************************************************************ consensus_2615#0 AGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACA 240 consensus_2615#1 AGCAGACGAAGGCCCTGGACAACCGAAAGGTCATGACGCTGGTTACCTGGGACGGAGACA 148 ************************************************************ consensus_2615#0 AGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAG 300 consensus_2615#1 AGCTGGTGTGCGTTCAGAGGGGGGAGAAGGCCAACCGCGGATGGAAACAGTGGATAGAAG 208 ************************************************************ consensus_2615#0 GAGACCTCCTTCACCTGG----------------------AGATCACTGCTCTCGACAAA 338 consensus_2615#1 GAGACCTCCTTCACCTGGTTTCTGTTGCCTTTCTTTCAGGAGATCACTGCTCTCGACAAA 268 ****************** ******************** consensus_2615#0 GTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGT 398 consensus_2615#1 GTCTGCAAGCAAGTATTTAAGAAAGCGGCTTGAGATGGAAGCTGCCCATCTGCCCCCTGT 328 ************************************************************ consensus_2615#0 GTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGACTCAAAAAAAAA 458 consensus_2615#1 GTTGCAAATGACCGCCTGTTTATGGTGTAATAGTAAAAAGATGTAAGAC----------- 377 ************************************************* consensus_2615#0 AAAAAAAACCCCGGGGGGGGCC 480 consensus_2615#1 ---------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |