These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2620#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 758 fasta sequence [ATAAGAATAGAAATTACAAGCTACTCCAGGAATTGGGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCTCGTGCAGTCCTGGTG-GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAATAACTGGGCAAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGTGAGAAAGGAGGCAGAAGGCTGCGATTGCCTCCAGGGCTTCCAGCTGACACACTCTCTGGGAGGAGGTACAGGCTCTGGGATGGGCACACTGCTCATCAGCAAAATTCGAGAGGAGTACCCAGATCGCATCATGAACACTTTCAGTGTTGTACCTTCACCAAAGGTGTCAGATACAGTGGTGGAGCCATACAATGCCACCCTCTCTGTGCATCAGCTGGTTGAGAACACCGATGAGACATACTGCATTGACAATGAGGCCCTCTATGACATCTGCTTTCGCACATTGAAACTGACCACACCCACCTATTCTGACCTCAACCATCTTGTCTCATGCACCATGAGC] [+] EMBL CA332974 [ATAAGAATAGAAATTACAAGCTACTCCAGGAATTGGGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCCCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAACAACTGGGCCAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGTGAGAAAGGAGGCAGAAGGCTGCGATTGCC ] [+] EMBL BU807719 [ATAAGAATAGAAATTACAAGCTACTCCAGGAATTGGGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCAGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCTCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAATAACTGGGCAAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGTGAGAAAGGAGGCAGAAGGCTGCGATTGCCTCCAGGGCTTCCAGCTGACACACTCTCTGGGAGGAGGTACAGGCTCTGGGATGGGCACACTGCTCATCAGCAAAATTCGAGAGGAGTACCCAGATCGCATCATGAACACTTTCAGTGTTGTACCTTCACCAAAGGTGTCAGATACAGTGGTGGAGCCATACAATGCCACCCTCTCTGTG ] [+] EMBL CA332901 [ATAAGAATAGAAATTACAAGCTACTCCAGGAATTGGGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCTCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGGGCAGGTAATAACTGGGCAAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGTGAGAAAGGAGGCAGAAGGCTGCGATTGCCTCCAGGGCTTCCAGCTGACACACTCTCTGGGAGGAGGTACAGGCTCTGGGATGGGCACACTGCTCATCAGCAAAATTCGAGAGGAGTACCCAGATCGCATCATGAACACTTTCAGTGTTGTACCTTCACCAAAGGTGTCAGATACAGTGGTGGAGCCATACAATGCC ] [+] EMBL CA590273 [ AAGAATAGAAATTACAAGCTACTCCAGGAATTGGGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCTCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAATAACTGGGCAAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGTGAGAAAGGAGGCAGAAGGCTGCGATTGCCTCCAGGGCTTCCAGCTGACACACTCTCTGGGAGGAGGTACAGGCTCTGGGATGGGCACACTGCTCATCAGCAAAATTCGAGAGGAGTACCCAGATCGCATCATGAACACTTTCAGTGTTGTACCTTCACCAAAGGT TCATAAAatttct ] [+] EMBL FR0060308 [ TTGGGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCTCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAATAACTGGTCAAAAGGCCACTA ] [+] EMBL FR0060454 [ gTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGTCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGTAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCCCGTGCAGTCCTGGTGTGATCTGGAGCCA GCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAG ] [+] EMBL FR0060970 [ ATCAGAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGGTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGGGGGAAGTATGTTCCTCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATC ] [+] EMBL CA590431 [ ACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGTTCCTCGTGCAGTCCTGGTG GATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACCTTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAACAACTGGGCCAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGTGAGAAAGGAGGCAGAAGGCTGCGATTGCCTCCAGGGCTTCCAGCTGACACACTCTCTGGGAGGAGGTACAGGCTCTGGGATGGGCACACTGCTCATCAGCAAAATTCGAAAGGAGTACCCAGATCGCATCATGAACACTTTCAGTGTTGTACCTTCACCAAAGGTGTCAGATACAGTGGTGGAGCCATACAATGCCACCCTCTCTGTGCATCAGCTGGTTGAGAACACCGATGAGACATACTGCATTGACAATGAGGCCCTCTATGACATCTGCTTTCGCACATTGAAACTGACCACACCCACCTATTCTGACCTCAACCATCTTGTCTCATGCACCATGAGC] consensusID : consensus_2620#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [GTGGATTTATGTCAAGCATTTAAGTCAGTATCTTTTCCTATTTCCATGGAAAAATCAACAGAATCAACAAATAGCTTTTTTGTAGGTCAAAATGTATTTAATTTTGTTTTGCTGTTTCGATGATAATCCCCTTTGTGGCATCTAGCTGCTCCAGGAATTGCGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTAACCACTACAAAAATCCTCTGCCACATCAGAACTTGACTGTATAGTTTAACATTTATTGTACCTCAGCCACAGGCTCCAGTCATGCAGGATCCTGGGAATCATTAGTTGTTGATACATAAAGGATTCATTCATTTTCACTGCCTTGTTTTTACCATTAGAAGAAACAACTAAAATCATTGTTACAAAGGACCATATGATAGCTAAAT] [+] EMBL CA590638 [GTGGATTTATGTCAAGCATTTAAGTCAGTATCTTTTCCTATTTCCATGGAAAAATCAACAGAATCAACAAATAGCTTTTTTGTAGGTCAAAATGTATTTAATTTTGTTTTGCTGTTTCGATGATAATCCCCTTTGTGGCATCTAGCTGCTCCAGGAATTGCGAACACTGATTTAAATCACAATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTTTTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAGCAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTAACCACTACAAAAATCCTCTGCCACATCAGAACTTGACTGTATAGTTTAACATTTATTGTACCTCAGCCACAGGCTCCAGTCATGCAGGATCCTGGGAATCATTAGTTGTTGATACATAAAGGATTCATTCATTTTCACTGCCTTGTTTTTACCATTAGAAGAAACAACTAAAATCATTGTTACAAAGGACCATATGATAGCTAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2620#0 ------------------------------------------------------------ consensus_2620#1 GTGGATTTATGTCAAGCATTTAAGTCAGTATCTTTTCCTATTTCCATGGAAAAATCAACA 60 consensus_2620#0 ------------------------------------------------------------ consensus_2620#1 GAATCAACAAATAGCTTTTTTGTAGGTCAAAATGTATTTAATTTTGTTTTGCTGTTTCGA 120 consensus_2620#0 -----ATAAGAATAGAAATTACAAGCTACTCCAGGAATTGGGAACACTGATTTAAATCAC 55 consensus_2620#1 TGATAATCCCCTTTGTGGCATCTAGCTGCTCCAGGAATTGCGAACACTGATTTAAATCAC 180 ** * * * **** ************ ******************* consensus_2620#0 AATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTT 115 consensus_2620#1 AATGAGGGAAATTGTACACCTACAGGCAGGCCAATGCGGCAACCAGATTGGCGCAAAGTT 240 ************************************************************ consensus_2620#0 TTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAG 175 consensus_2620#1 TTGGGAGGTAATAAGTGACGAACATGGGATTGACCCTTCTGGGAAATACAGTGGCGACAG 300 ************************************************************ consensus_2620#0 CAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTGGGAAGTATGT 235 consensus_2620#1 CAACCTGCAGTTGGAGCGAATTAATGTCTATTACATTGAGGCATCAGGTAACCACTACAA 360 ************************************************* * ** consensus_2620#0 TCCTCGTGCAGTCCTGGTGGATCTGGAGCCAGGCACAATGGACTCTGTGAGATCTGGACC 295 consensus_2620#1 AAATCCT-CTGCCACATCAGAACTTGACT---GTATAGTTTAACATTTA----TTGTACC 412 ** * * * * ** ** ** * * * * * * * ** *** consensus_2620#0 TTATGGGCAGATCTTTAGACCGGACAACTTTGTTTTCGGCCAGAGCGGAGCAGGTAATAA 355 consensus_2620#1 TCAGCCACAGGCTCCAGTCATGCAGGATCCTGGGAATCATTAGTTGTTGATACATAAAGG 472 * * *** * * * ** ** * *** consensus_2620#0 CTGGGCAAAAGGCCACTACACTGAGGGAGCCGAGCTGGTAGACTCGGTCCTGGATGTGGT 415 consensus_2620#1 ATTCATTCATTTTCACTGCCTTGTTTTTACCA--TTAGAAGAAACAACTAAAATCATTGT 530 * * **** * ** ** * * *** * * ** consensus_2620#0 GAGAAAGGAGGCAGAAGGCTGCGATTGCCTCCAGGGCTTCCAGCTGACACACTCTCTGGG 475 consensus_2620#1 TACAAAGGAC-CATATGATAGCTAAAT--------------------------------- 556 * ****** ** * * ** * consensus_2620#0 AGGAGGTACAGGCTCTGGGATGGGCACACTGCTCATCAGCAAAATTCGAGAGGAGTACCC 535 consensus_2620#1 ------------------------------------------------------------ consensus_2620#0 AGATCGCATCATGAACACTTTCAGTGTTGTACCTTCACCAAAGGTGTCAGATACAGTGGT 595 consensus_2620#1 ------------------------------------------------------------ consensus_2620#0 GGAGCCATACAATGCCACCCTCTCTGTGCATCAGCTGGTTGAGAACACCGATGAGACATA 655 consensus_2620#1 ------------------------------------------------------------ consensus_2620#0 CTGCATTGACAATGAGGCCCTCTATGACATCTGCTTTCGCACATTGAAACTGACCACACC 715 consensus_2620#1 ------------------------------------------------------------ consensus_2620#0 CACCTATTCTGACCTCAACCATCTTGTCTCATGCACCATGAGC 758 consensus_2620#1 ------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |