These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 644 fasta sequence [TGCTGGCACGGAGCACAAAGCATCCGTCGGTGCCTTTAAGACTACCTCGAGGATTGCAAACTCTTTACTTTCGACTGGATTATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGG-CCTGCATAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGATGAGCTTCGCCTCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTACACTCGAGGCACCGACAGCGCCGGGATCGTCACTCGCCTCATGGCGGGCTGCACCACGGGGGCCATGGCCGTGGCCTTTGCGCAGCCGACGGACGTGGTGAAGGTGCGATTCCAAGCCCAGGTACGA] [+] EMBL BU806859 [TGCTGGCACGGAGCACAAAGCATCCGTCGGTGCCTTTAAGACTACCTCGAGGATTGCAAACTCTTTACTTTCGACTGGATTATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGG CCTGCATAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGATGAGCTTCGCCTCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTACACTCGAGGCACCGACAGCGCCGGGATCGTCACTCGCCTCATGGCGGGCTGCACCA ] [+] EMBL BU807270 [ CATCCGTCGGTGCCTTTAAGACTACCTCGAGGATTGCAAACTCTTTACTTTCGACTGGATTATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGG CCTGCATAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGGTGAGCTTCGCCTCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTACACTCGAGGCACCGACAGCGCCGGGATCGTCACTCGCCTCATGGCGGGCTGCACCACGGGGGCCATGGCCGTGGCCTTTGCGCAGCCGACGGACGTGGTGAAGGTGCGATTCCAAGCCCAGGT ] [+] EMBL BU805626 [ TGCCTTTAAGACTACCTCGAGGATTGCAAACTCTTTACTTTCGACTGGATTATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGG CCTGCATAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACAGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGATGAGCTTCGCCTCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTACACTCGAGGCACCGACAGCGCCGGGATCGTCACTCGCCTCATGGCGGGCTGCACCACGGGGGCCATGGCCGTGGCCTTTGCGCAGCCGACGGACGTGGTGAAGGTGCGATTCCAAGCCCAGGTACGA] [+] EMBL BU805534 [ AGACTACCTCGAGGATTGCAAGCTCTTTACTTTCCACTGGATTATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGG CCTGCATAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGATGAGCTTCGCCTCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTACACTCGAGGCACCGACAGCGCCGGGATCGTCACTCGCCTCATGGCGGGCTGCACCACGGGGGCCATGGCCGTGGCCTTTGCGCAGCCGACGGACGTGGTGAAGGTG ] [+] EMBL FR0063971 [ CAAACTCTTTACTTTCGACTGGATTATATGTTCCCAGGGAGTCCCCAGGATTTGATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGG CCTGCATAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGA GGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGGCTGGTGGg ] [+] EMBL BU804571 [ TATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCAGCAGTAAAGTTTTTTGGAGCGGGCACGGCGGTTCTGTTTAGCTGACCTCGTCACCTTCCCACTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGCGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGATGAGCTTCGCCTCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTAC ] [+] EMBL BU806634 [ TATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCA TTTTAAAGTTTTTTGGAGCGGGCACGGCGG CCTGCATAGCTGACCTCGTCACCTTCCCACTGGGCACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGCAGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGCGACAGATGAGCTTCGCCTCGG ] consensusID : consensus_2623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [TTAGACCATTGTTAGATTATCCCTTTTGTTCGGATTTGTAGTATGCTTTTACGGCTTATTACTTCCAAGAGATCTATGGAAAATCGACAAAGAGAATTTATAGATGGGACCAAGTTCAGTAAGAAGGACGCCTTTAGAGAATCCTGATCTTGGTGCTTTTTCCTCATCACGTGCCGCAGTAAAGAGTTCCGGGTTTTGTTCCCTGGACTTTACTGCTCCAGTCCTCATTCCTGATATTACTGTCGATAAGCGCGGAACATGGTGGGATTCGGACCCGCAGAAGCGCCGCCCTCGGCGGTGGTGAAGTTTGTGGGTGCGGGCACGGCGGCCTGCATCGCTGACCTGCTCACCTTCCCTCTGGACACCGCCAAAGTGCGGCTGCAGATCCAAGGAGAGGGCAAGGGTGCGGGAGCGTCTGCTGTGAAATATCGCGGAATGTTTGGCACCATCACCACCATGGTGCGCACCGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGAGGCAGATGAGCTTCGCCTCTGTCCGGATCGGCCTCTACGACTCTGTCAAGCAGTTCTACACCAGAGGCTCTGATTGTATCGGGCGCGGCACCAGGCTGCTGGGGGGCTGCACCACCGGCGCCATG] [+] EMBL CA591208 [TTAGACCATTGTTAGATTATCCCTTTTGTTCGGATTTGTAGTATGCTTTTACGGCTTATTACTTCCAAGAGATCTATGGAAAATCGACAAAGAGAATTTATAGATGGGACCAAGTTCAGTAAGAAGGACGCCTTTAGAGAATCCTGATCTTGGTGCTTTTTCCTCATCACGTGCCGCAGTAAAGAGTTCCGGGTTTTGTTCCCTGGACTTTACTGCTCCAGTCCTCATTCCTGATATTACTGTCGATAAGCGCGGAACATGGTGGGATTCGGACCCGCAGAAGCGCCGCCCTCGGCGGTGGTGAAGTTTGTGGGTGCGGGCACGGCGGCCTGCATCGCTGACCTGCTCACCTTCCCTCTGGACACCGCCAAAGTGCGGCTGCAGATCCAAGGAGAGGGCAAGGGTGCGGGAGCGTCTGCTGTGAAATATCGCGGAATGTTTGGCACCATCACCACCATGGTGCGCACCGAGGGCCCCAGGAGTCTGTACAGCGGCCTGGTGGCGGGGCTCCAGAGGCAGATGAGCTTCGCCTCTGTCCGGATCGGCCTCTACGACTCTGTCAAGCAGTTCTACACCAGAGGCTCTGATTGTATCGGGCGCGGCACCAGGCTGCTGGGGGGCTGCACCACCGGCGCCATG] consensusID : consensus_2623#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [TATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGTCTTTTTTAGCAGCAAAGTTTTTTGGAGCGGGCACGGCGGCCTGCATAACTGACCTCGCCACCTTCCCACTGGACACAGGCAAAGGTAGACTACAGATTCGTGGGGAATCTCACATAGGGGAGGGCACCACAAGCCCGAAGGACCGGGGGGTGTTTGACACCATCACCACAATGGGGCACAAACAGGGTACCCCAAACTCTCGACAACCAGATGCGTGCGCCAGCGTCCGCCACCGAATTAACGTGTTCTCT] [+] EMBL BU805144 [TATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGACATCACTGCAACTTCAAAGATTCGTTTCCTTCTCGAGAAAACCTGAAACTCTTCCTCCCCGTTACTAACAGGAATAAAAATGGTTGGCATGAAAGCCCCAGATGTGGTGTCTTTTTTAGCAGCAAAGTTTTTTGGAGCGGGCACGGCGGCCTGCATAACTGACCTCGCCACCTTCCCACTGGACACAGGCAAAGGTAGACTACAGATTCGTGGGGAATCTCACATAGGGGAGGGCACCACAAGCCCGAAGGACCGGGGGGTGTTTGACACCATCACCACAATGGGGCACAAACAGGGTACCCCAAACTCTCGACAACCAGATGCGTGCGCCAGCGTCCGCCACCGAATTAACGTGTTCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2623#0 -------------------------------------------TGCTGGCACGGAGCACA 17 consensus_2623#2 ------------------------------------------------------------ consensus_2623#1 TTAGACCATTGTTAGATTATCCCTTTTGTTCGGATTTGTAGTATGCTTTTACGGCTTATT 60 consensus_2623#0 AAGCATCCGTCGGTGCCTTTAAGACTACCTCGAGGATT-GCAAACTCTTTACTTTCGACT 76 consensus_2623#2 ------------------------------------------------------------ consensus_2623#1 ACTTCCAAGAGATCTATGGAAAATCGACAAAGAGAATTTATAGATGGGACCAAGTTCAGT 120 consensus_2623#0 GGATTATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGAC--ATCAC-TGCAAC 133 consensus_2623#2 ----TATATGTTCCCAGGGAGTCCCCAGGATTTTATGGCCCTGGAC--ATCAC-TGCAAC 53 consensus_2623#1 AAGAAGGACGCCTTTAGAGAATCCT---GATCTTGGTGCTTTTTCCTCATCACGTGCCGC 177 * * ** ** *** *** ** ** * * ***** *** * consensus_2623#0 TTCAAAGATTC----GTTTCCTTCTCGAGAA---AACCTGAAACTCTTCCTCCCCGTTAC 186 consensus_2623#2 TTCAAAGATTC----GTTTCCTTCTCGAGAA---AACCTGAAACTCTTCCTCCCCGTTAC 106 consensus_2623#1 AGTAAAGAGTTCCGGGTTTTGTTCCCTGGACTTTACTGCTCCAGTCCTCATTCCTGATAT 237 ***** * **** *** * ** * * ** ** * ** * ** consensus_2623#0 TAACAGGAATAA-------AAATGGTTGGCATGAAAGCCCCAGATGTGGTGCCCTCGGCA 239 consensus_2623#2 TAACAGGAATAA-------AAATGGTTGGCATGAAAGCCCCAGATGTGGTGTCTTTTTTA 159 consensus_2623#1 TACTGTCGATAAGCGCGGAACATGGTGGGATTCGGACCCGCAGAAGCGCCGCCCTCGGCG 297 ** **** * ***** ** * * ** **** * * * * * consensus_2623#0 GCAGTAAAGTTTTTTGGAGCGGGCACGGCGGCCTGCATAGCTGACCTCGTCACCTTCCCA 299 consensus_2623#2 GCAGCAAAGTTTTTTGGAGCGGGCACGGCGGCCTGCATAACTGACCTCGCCACCTTCCCA 219 consensus_2623#1 GTGGTGAAGTTTGTGGGTGCGGGCACGGCGGCCTGCATCGCTGACCTGCTCACCTTCCCT 357 * * ****** * ** ******************** ******* ********* consensus_2623#0 CTGGACACAGCCAAAGTTAGACTACAGATTCAGGGGGAATCTCAGATAGTGGAGGGCAGC 359 consensus_2623#2 CTGGACACAGGCAAAGGTAGACTACAGATTCGTGGGGAATCTCACATAGGGGAGGGCACC 279 consensus_2623#1 CTGGACACCGCCAAAGTGCGGCTGCAGATCCAAGGAGAGG---GCAAGGGTGCGGGAGCG 414 ******** * ***** * ** ***** * ** ** * * * *** consensus_2623#0 AGAGCCACGAAGTACCGGGGCGTGTTTGGCACCATCACCACCATGGTGCGCACGGAGGGC 419 consensus_2623#2 ACAAGCCCGAAGGACCGGGGGGTGTTTGACACCATCACCACAATGGGGCACAAACAGGGT 339 consensus_2623#1 TCTGCTGTGAAATATCGCGGAATGTTTGGCACCATCACCACCATGGTGCGCACCGAGGGC 474 *** * ** ** ****** ************ **** ** ** **** consensus_2623#0 -CCCAGGAGTCTGTACAGCGGCCTG-GTG-GCGGGGCTCCAGCGACAGATGAGCTTCGCC 476 consensus_2623#2 ACCCCAAACTCTCGACAACCAGATGCGTGCGCCAGCGTCCGCCACCGAATTAACGTGTTC 399 consensus_2623#1 -CCCAGGAGTCTGTACAGCGGCCTG-GTG-GCGGGGCTCCAGAGGCAGATGAGCTTCGCC 531 *** * *** *** * ** *** ** * *** * ** * * * * consensus_2623#0 TCGGTCCGGATCGGCCTCTACGACTCCATGAAGCAGTTCTACACTCGAGGCACCGACAGC 536 consensus_2623#2 TCT--------------------------------------------------------- 402 consensus_2623#1 TCTGTCCGGATCGGCCTCTACGACTCTGTCAAGCAGTTCTACACCAGAGGCTCTGATTGT 591 ** consensus_2623#0 GCCGGGATCGTCACTCGCCTCATGGCGGGCTGCACCACGGGGGCCATGGCCGTGGCCTTT 596 consensus_2623#2 ------------------------------------------------------------ consensus_2623#1 ATCGGGCGCGGCACCAGGCTGCTGGGGGGCTGCACCACCGGCGCCATG------------ 639 consensus_2623#0 GCGCAGCCGACGGACGTGGTGAAGGTGCGATTCCAAGCCCAGGTACGA 644 consensus_2623#2 ------------------------------------------------ consensus_2623#1 ------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |