These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence [CCGCCAAAGAGTCTCCCACCAACGTGCTTCTCTCCAGCTCGGGGCATAAAAGAAGCCGAGCGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGTAGGTAATGCGATGTTTTGCGATTTATTCCGGGCCAGATTAAACCCGCATCAACACGAAGTGTAGGCGAGGATTATTTTGGCCTGGTGTTGCGCTTTACGCGCAGCTGTTACTTTATATAAACCCCGCTAACGATCCCAGAATTTGATCCATATGTACTGTAAAATCCTTAAGCGAGTATAATAATTTACAAGCGCTGAAGGCTACCTGCGGATTGAACCTTTAAAAATGGTCCAAAACGTCCTAATAATGGTGAAGTTACGTGCGTAAACACTGTGGAGCACTGATTGCAGTCGTGGTTCAGAGCTGAGGGTGTTTGAAATAAGACTCAAATCTGCTCGCTGCGGAGAAGTGAAAGAAAGTGTGTTTTCATCGGGCCTGTGGGGACACATGGAACCACAAACACAA] [+] EMBL CA846108 [CCGTCAATGAGTCTCCCACCAACGTGCTTCTCTCCAGCT GGGCATAAAAGAAGCCGAGCGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGTAGGTAATGCGATGTTTTGCGATTTATTCCGGGCCAGATTAAACCCGCATCAACACGAAGTGTAGGCGAGGATTATTTTGGCCTGGTGTTGCGCTTTACGCGCAGCTGTTACTTTATATAAACCCCGCTAACGATCCCAGAATTTGATCCATATGTACTGTAAAATCCTTAAGCGAGTATAATAATTTACAAGCGCTGAAGGCTACCTGCGGATTGAACCTTTAAAAATGGTCCAAAACGTCCTAATAATGGTGAAGTTACGTGCGTAAACACTGTGGAGCACTGATTGCAGTTGTGGTTCAGAGCTGAGGGTGTTTGAAATAAGACTCAAATCTGCTCGCT ] [+] EMBL CA588525 [ CGCTAAACAGTCTCCCACCAACGTCCTTCTCTCCAGCTCGGGTCATAAAACAAGCCGAGCGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGTAGGTAATGCGATGTTTTGCGATTTATTCCGGGCCAGATTAAACCCGCATCAACACGAAGTGTAGGCGAGGATTATTTTGGCCTGGTGTTGCGCTTTACGTTTTGCTGTTACTTTATATAAACCCCGCTAACGATCCCAGAATTTGATCCATATGTACTGTAAAATCCTTAAGCGAGTATAATAATTTACAAGCGCTGAAGGCTACCTGCGGATTGAACCTTTAAAAATGGTCCAAAACGTCCTAATAATGGTGAAGTTACGTGCGTAAACACTGTGGAGCACTGATTGCAGTCGTGGTTCAGAGCTGAGGGTGTTTGAAATAAGACTCAAATCTGCTCGCTGCGGAGAAGTGAAAGAAAGTGTGTTTTCATCGGGCCTGTGGGGACACATGGAACCACAAACACAA] consensusID : consensus_2666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 588 fasta sequence [CCCGCATTCAGTCTCCCACCAACGGCCTTCTCTCCAGCTCGGGTAACAAAACAAGCCGAG-CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC-GGCACAGGGTTTGCTGTAGCTGAGCCCCAGGTGGCCATGTTCT-GTGGGAAACTCAACATGCACGTTAACATTCAGACAGGCCGCTGGGAG-CCCGACCCATCCGGAACCAAGAGCTGTGTAGGAACCAAAGAGGGGGTGCTTGCAGAATTGCCAGGAGAGGAATCCTGAGTTCCAAATCACAAACGTGGTCGAAGCCGACCAGCAAATTCGTATTGAAAACTGGTGCAAGAAGAAGAAGGCGTGCAAAGGCCATGCCCACATCGTGGTGCCTTATAAATGCTTAGTGGGGGAATTTGTGAGCGACGTTCTTCTGGTTTCAGAGAAATGC] [+] EMBL BU806146 [CCCGCATTCAGTCTCCCACCAACGTCCTTCTCTCCAGCTCGGGTAACAAAACAAGCCGAG CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGTAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACGTTAACATTCAGACAGGCCGCTGGGAG CCCGACCCATCCGGAACCAAGAGCTGTGTAGGAACCAAAGAGGGGGTGC TGCAGTATTGCCAGGAGATGTATCCTGAGTTCCAAATCACAAACGTGGTCGAAGCCGACCAGCAAATTCGTATTGAAAACTGGTGCAAGAAGAAGAAGGCGTGCAAAGGCCATGCCCACATCGTGGTGCCTTATAAATGCTTAGTGGGGGAATTTGTGAGCGACGTTCTTCTGGTTTCAGAGAAATGC] [+] EMBL FR0058840 [ CAGTCTCCCACCAACGGCCTTCTCTTCAGCTTGGGTAACAAAACAAGCCGAG CGGTATTCCTTCCGTTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAAAAAAATGGGTCCGGTCTCGGCGATATCTGACCTCGATCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC GGCGCAGTGTTTG ] [+] EMBL FR0059594 [ GTAACAAAACAAGGCGAG CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGTAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACGTTAACATTCAGACAGGCCGCTGGGAG CCCGACCCATCCGGAACCAAGAGCTGTGTAGGAACCAAAGAGGGGTTGCTTGCAGATTTGCCAGGAGAGGAATCC ] [+] EMBL FR0061371 [ GTAACAAAACAAGCCGTG CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGCATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGTAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACGTTAACATTCAGACAGGCCGCTGGGAG CCCGACCCATCCGGAACCAAGAGCTTGG ] [+] EMBL FR0057667 [ TAACAGAACAAGCCGAG CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCAGGATACAAGTTTAGTCAGAGTCACAGAAGCGCAGATAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGGCAGTGCCGGGAACAGGGTTTGCTGTAGTTGAGCCCGAGGTGGCCATGTTCTGGTGGGAAACGCAACATGCACGTTAACATTCAGGCAGGGCGGTGGG ] [+] EMBL FR0058246 [ ATGCCGAGACGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGGTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGGAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACG ] [+] EMBL FR0058050 [ ATGCCGAGACGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGGTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGGAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACG ] [+] EMBL FR0058937 [ TCCGCTCTGTGGAAGCGCTTGTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGTAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACGTTAACATTCAGACAGGCCGCTGGGAGCCCCGACCCATCCGGGACCAAGAGCTGTGTAGGAc ] [+] EMBL FR0058925 [ GGAAGCGCTTGTGCAGGACTTTATTCTCCAGAGTATCGCCGTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGGTCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGNGCCAGCGTTGGCCGGTTATATTGAGGCACTAGCAGCCAATGCC GGCACAGGGTTTGCTGTAGCTGAGCCCCAGGTGGCCATGTTCT GTGGGAAACTCAACATGCACGTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2666#0 CCGCCAAAGAGTCTCCCACCAACGTGCTTCTCTCCAGCTCGGGGCATAAAAGAAGCCGAG 60 consensus_2666#1 CCCGCATTCAGTCTCCCACCAACGGCCTTCTCTCCAGCTCGGGTAACAAAACAAGCCGAG 60 ** ** *************** ***************** * **** ******** consensus_2666#0 CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCC 120 consensus_2666#1 CGGGAGTCCTTCCGCTCTGTGGAAGCGCTTCTGCAGGACTTTATTCTCCAGAGTATCGCC 120 ************************************************************ consensus_2666#0 GTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGG 180 consensus_2666#1 GTTCAGCTGTCGGGATACAAGTTTATTCAGAGTCGCAGAACCGCAGAAAAATGGGTCCGG 180 ************************************************************ consensus_2666#0 TCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTG 240 consensus_2666#1 TCTCGGCGATATCTGTCCTCGTTCTTGGCATTGTGGTGCCAGCGTTGGCCGGTTATATTG 240 ************************************************************ consensus_2666#0 AGGTAGGTAATGCGATGTTTTGCGATTTATTCCGGGCCAGATTAAACCCGCATCAACACG 300 consensus_2666#1 AGGCA-------------CTAGCAGCCAATGCCGGCACAG----GGTTTGCTGTAGC-TG 282 *** * * ** ** **** *** ** * * * consensus_2666#0 AAGTGTAGGCGAGGATTATTTTGGCCTGGTGTTGCGCTTTACGCGCAGCTGTTACTTTAT 360 consensus_2666#1 AGCCCCAGGTGGCCAT-------GTTCTGTGGGAAACTCAACATGCA--CGTTAACATTC 333 * *** * ** * *** ** ** *** **** * consensus_2666#0 ATAAACCCCGCTAACGATCCCAG--AATTTGATCCATATGTACTGTAAAATCCTTAAGCG 418 consensus_2666#1 AGACAGGCCGCTGGGAGCCCGACCCATCCGGAACCAAGAGCTGTGTAGGAACCA-AAGAG 392 * * * ***** ** * * ** *** * **** * ** *** * consensus_2666#0 AGTATAATAATTTACAAGCGCTGAAGGCTACCTGCGGATTGAACCTTTAAAAATGGTCCA 478 consensus_2666#1 GGGGTGCTTGCAGAATTGCCAGGAGAGGAATCCTGAGTTCCAAATCACAAACGTGGTCGA 452 * * * * ** ** * * * * * ** *** ***** * consensus_2666#0 AAACGTCCTAATAATGGTGAAGTTACGTGCGTAAACACTGTGGAGCACTGATTGCAGTCG 538 consensus_2666#1 AGCCGACC-------AGCAAATTCGTAT---TGAAAACTG----GTGCAAGAAGAAGAAG 498 * ** ** * ** * * * ** **** * * * ** * consensus_2666#0 TGGTTCAGAGCTGAGGGTGTTTGAAATAAGACTCAAATCTGCTCGCTGCGGAGAAGTGAA 598 consensus_2666#1 GCGTGCAAAGGCCATGCCCACATCGTGGTGCCTTATAAATGCTTAGTGGGGGAATTTGTG 558 ** ** ** * * * ** * * **** ** ** * ** consensus_2666#0 AGAAAGTGTGTTTTCATCGGGCCTGTGGGGACACATGGAACCACAAACACAA 650 consensus_2666#1 AGCGA---CGTTCTT-CTGGTTTCAGAGAAATGC------------------ 588 ** * *** * ** * * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |