These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 642 fasta sequence [TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG-GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC-TTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTTGCTGGGAATAGA-GGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATCCAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTTATGCCAAGGCACTGATTCATAACGCCGTGTCCAATATCATCTGC] [+] EMBL CA591087 [TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC TTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTTGCTGGGAATAGA GGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATCCAGCAAGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTTATGCCAAAGCACCGATTCATAACGCCGTGTCCAATATCATCTGC] [+] EMBL CA589631 [TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC TTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTTGCTGGGAATAGA GGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATCCAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTTATGCCAAGGCACTGATTCATAACGCCGTG ] [+] EMBL CA590772 [ GTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC TTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTTGCTGGGAATAGA GGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGAGATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCATCCAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGNGAGCCTTTTTATGCCAAGGCACTGATTCATAACGCCGTGTCCCATATC ] [+] EMBL FR0059150 [ AATTATACACACGACATCTTCGTAAATATTATCAGAATGGAGGCGATACTCAGCACGGTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGGTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGNGCCGGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAA ] [+] EMBL FR0059350 [ CACACGACATCTTCGGAAATAGGATCAGAATGGAGGCGATACTCAGGACCCTCGGCTTGGAATGGATG GACGGCAGCACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGTGGAAAAGGGAGAAAAC TTCGTAGATCGGCCCCTCATTCCACTGTTTGAAGCAT ] [+] EMBL FR0059218 [ ACATCTTCGGAAATAGGATCAGAATGGAGGCGAGACTCACCACCCTCGGCTTGGAATGGATGCCACAGCAGGACCATCCTAATTTTTCTCTTGGCTTTTGTCTTGGTGGCCGAGTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGACCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATT ] [+] EMBL FR0059584 [ TCGGAAATAGGATCAGGAGGGAGGCGATACTCAACACCCTCGCCTCGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGATTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGACCCCTTCCCTTGATCGGAGATCTTCATCGCATCAACCCCTACAGACTTCACTTACAATTCGCAGAGTCCGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTATGGGGGAGAGTCGCTGTTCTGAACGGCTACTAAACTGTGAGAGAGGCA ] [+] EMBL FR0059225 [ CGGAAATAGGATCAGAATGGAGGCGAGACTCAGCACCCTCGGCTTGGAATGGATG CACAGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGGTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGAGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGATAG ] [+] EMBL FR0059939 [ ATCAGAATGGAGGCGATACTCAGGACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGGTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGNGGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGGTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGAGGCACTGGGGGAAAAGGGAGAAAACTTTCGTAGATCGTCCCCTCATTCCACTGTTTGAAGCATTGGCTGGGAATAGAGGGGTGGGTGATAT ] [+] EMBL FR0059084 [ AGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATG GACGGCAGGACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGTTGGCCGATTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGNGATCTTCATCGCATCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTTTCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAGA GCACTGGT GAAAAGGGAGAAAAC TTCG AGATCG CCCCTCATTCCACTGT ] consensusID : consensus_2672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence [CATCTTCTGAATTAGGACCAGAAGGGAGGCGATGCTCAGGACCCTCCTCTCGGAATCCATTCACTCCACCCACCATCCTAATTTTTCTCTTGGCTTCTGACTTGCGTAGCCGACTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGCCCTTTCCCTTGATCGGCGATCTTCATCGCATCAACCTCTCCAGACTTCACTT] [+] EMBL FR0059631 [CATCTTCTGAATTAGGACCAGAAGGGAGGCGATGCTCAGGACCCTCCTCTCGGAATCCATTCACTCCACCCACCATCCTAATTTTTCTCTTGGCTTCTGACTTGCGTAGCCGACTACATAAAGAACAGAGTGCCATCAAACTTTCCGCCCGGGCCGTGCCCTTTCCCTTGATCGGCGATCTTCATCGCATCAACCTCTCCAGACTTCACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2672#0 TGGAGCTAGTGTCACAGAACAACTCAGGAGGGACGCAATTATACACACGACATCTTCGGA 60 consensus_2672#1 --------------------------------------------------CATCTTCTGA 10 ******* ** consensus_2672#0 AATAGGATCAGAATGGAGGCGATACTCAGCACCCTCGGCTTGGAATGGATGGACGGCAGG 120 consensus_2672#1 ATTAGGACCAGAAGGGAGGCGATGCTCAGGACCCTCCTCTCGGAATCCATTCACTCCACC 70 * ***** ***** ********* ***** ****** ** ***** ** ** ** consensus_2672#0 -ACCATCCTAATTTTTCTCTTGGTTTTTGTCTTGT-TGGCCGATTACATAAAGAACAGAG 178 consensus_2672#1 CACCATCCTAATTTTTCTCTTGGCTTCTGACTTGCGTAGCCGACTACATAAAGAACAGAG 130 ********************** ** ** **** * ***** **************** consensus_2672#0 TGCCATCAAACTTTCCGCCCGGGCCGTGGCCCCTTCCCTTGATCGGTGATCTTCATCGCA 238 consensus_2672#1 TGCCATCAAACTTTCCGCCCGGGCCGTG-CCCTTTCCCTTGATCGGCGATCTTCATCGCA 189 **************************** *** ************* ************* consensus_2672#0 TCAACCCCTCCAGACTTCACTTACAATTCGCAGAGTTTGCAGGAAAGTACGGAAACATTT 298 consensus_2672#1 TCAACCTCTCCAGACTTCACTT-------------------------------------- 211 ****** *************** consensus_2672#0 TCAGCCTTCGTCTTTTCGGTGGGAGAGTCGTTGTTCTGAACGGCTACAAAACTGTGAGAG 358 consensus_2672#1 ------------------------------------------------------------ consensus_2672#0 AGGCACTGGTGGAAAAGGGAGAAAACTTCGTAGATCGTCCCCTCATTCCACTGTTTGAAG 418 consensus_2672#1 ------------------------------------------------------------ consensus_2672#0 CATTTGCTGGGAATAGAGGGTTGGTGATATCTAATGGCAATCCTTGGAAACACCAGAGGA 478 consensus_2672#1 ------------------------------------------------------------ consensus_2672#0 GATTCGCTCTTCACACACTCAGGAACTTTGGAATTGGGAAGAAGAGCCTGGAGCCATCCA 538 consensus_2672#1 ------------------------------------------------------------ consensus_2672#0 TCCAGCAGGAGTGCCACTACCTGGCTGAGGCTTTTGCGCAGCACAAAGGGGAGCCTTTTT 598 consensus_2672#1 ------------------------------------------------------------ consensus_2672#0 ATGCCAAGGCACTGATTCATAACGCCGTGTCCAATATCATCTGC 642 consensus_2672#1 -------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |