These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [TCTGTAAGAGCATCTCAACAAAGACTGGTTTTGTTCAAAGAAACCCTTCAGGAACCTGCAGCTAAAATGGCCACTGAGAAAAGACTCTCTGCAAGACGTAAGCATACACTGAAAAGCTGTCTGCTGGTCGTGGCTGGAAATTTACTGGAGGCAGAGTCAGTGGTGAAGGTGGAGGAGAGGGAGAAATACCTGGCAGATAAATGCCCTCCTCTGGAGCTGCCATACTCCAGGGACGAGCTCATGGAACTCTGTAAACAGCTTCATCAGCAGGTTGGTGTCAGTGAGGAGGAGCGATACTGCATTGAGTTTAAGCTAAACATGGTTCTGAATGAGGTACGAGACCTGAACATAAAGATCGTAGATTTGAGGGGAAAGTTCAAAAGACCACGTCTGAAGAAAGTCCGTATGTCTGCTGACGCCATGTTGAAAGCTCTGCTGGGCTCCAAACACACAGTCAACATGGATCTGAGGGCTAACTTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAGGACAAGCAGCTCCGTGATGTTGGAGACTGGCGTAAGAATGTGGAGGACAAGTCTGACAGGAAGAAGATGTTTGATAGTTAAATGTGAGCTGTCCTTGGTTGTCCATGACATTTCAGAATGCGGTGTTAGCTTTCAAGTGAAGAGTTTTA] [+] EMBL CA588659 [TCTGTAAGAGCATCTCAACAAAGACTGGTTTTGTTCAAAGAAACCCTTCAGGAACCTGCAGCTAAAATGGCCACTGAGAAAAGACTCTCTGCAAGACGTAAGCATACACTGAAAAGCTGTCTGCTGGTCGTGGCTGGAAATTTACTGGAGGCAGAGTCAGTGGTGAAGGTGGAGGAGAGGGAGAAATACCTGGCAGATAAATGCCCTCCTCTGGAGCTGCCATACTCCAGGGACGAGCTCATGGAACTCTGTAAACAGCTTCATCAGCAGGTTGGTGTCAGTGAGGAGGAGCGATACTGCATTGAGTTTAAGCTAAACATGGTTCTGAATGAGGTACGAGACCTGAACATAAAGATCGTAGATTTGAGGGGAAAGTTCAAAAGACCACGTCTGAAGAAAGTCCGTATGTCTGCTGACGCCATGTTGAAAGCTCTGCTGGGCTCCAAACACACAGTCAACATGGATCTGAGGGCTAACTTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAGGACAAGCAGCTCCGTGATGTTGGAGACTGGCGTAAGAATGTGGAGGACAAGTCTGACAGGAAGAAGATGTTTGATAGTTAAATGTGAGCTGTCCTTGGTTGTCCATGACATTTCAGAATGCGGTGTTAGCTTTCAAGTGAAGAGTTTTA] consensusID : consensus_2676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 551 fasta sequence [AAACAAACCAGCACCAT-GTCTGAG-AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT---AAACACACAGTGAACCTTGACCTGAGGGCCAACCTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAGCCTGCAGATGTGGGCGACTGGCGGAAGAACATTGAGGACAAAGCCGACAGGAAGAAGATGTTTGAGACCTCATAAACTACTGAAGCCTTTGTTGCAGG] [+] EMBL FR0063829 [AAACAAACCAGCACCAT GTCTGAG AAGAAGATGTCGTCGAGCCGCAGCCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGCATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTC ] [+] EMBL FR0055725 [AAACAAACCAGCACCAT GTCTGAG AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCTAAAAAACACACAGTGAACCTTGACCTGAAGGCCAACCTGAAGCAGGTGAAGAAAGACGTGAAAGAAGAGCCTGCAGATGTGGG ] [+] EMBL BU804644 [ CAAACCAGCACCAT GTCTGAG AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT AAACACACAGTGAACCTTGACCTGAGGGCCAACCTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAGCCTGCAGATGTGGGCGACTGGCGGAAGAACATTGAGGACAAAG ] [+] EMBL FR0055548 [ AAACCAGCACCAT GTCTGAG AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGCTTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGACAAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT AAACACACAGTGAACCTTGACCTGAGGGCCAACCTGAAGCAGGTGACGAAGGAGGTGGAAGAGGATCCTGCAGATGTGGG ] [+] EMBL FR0055392 [ CAGCACCAT GTCTGAG AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAGAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAAAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT AAACACACAGTGGACCCTTACCTGA ] [+] EMBL FR0055207 [ AGCACCATAGTCTGAGTAAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT AAACACACAGTGAACCTTGACCTGAGGGCCAACCTGAAGCAGGTGAAGAAGGACGTGAAAGAAGAGCCTGCAGATGTGGGCGACTGGCGGCAGAACATTGAGGACACAGCCGACAGGAAGAAGATGTTTGAGACCTCATAAACTACTGAAGCCTTTGTTGCAGG] [+] EMBL FR0063928 [ T GTCTGAG AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTG ] [+] EMBL BU804774 [ ccCTGAG AAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCACCTA AATGTAGACGAAGAGCGCTATGACCTGCAGACCAAATTGGGAAACGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGAAGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT AAACACACAGTGAACCTTGACCTGAGGGCCAACCTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAGCCTGCAGATGTGGGCGACTGGCGGA ] [+] EMBL FR0055727 [ AGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTGATGCTGCAAATTGCTGCATATTGGGTTGTTCAGGAGATAAAGGATACCGCTGCTGCCAAGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGCGACCAGGCCGCTCTCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACCAAGAGCGCTATGACCTGCAGACCAAATTGGGAAAGGCCGATCCAGAGATTGATGACCTGAAGATTAAAGTGATTGACCTGGCTGGTGTGAAGAAGCCCGCCCTGATGAAAGTCCGTATGTCCGCCGATGCCATGTTGAAAGCTCTGCTGGGCTCT AAACACACAGTGAACCTTGACCTGATGGCCAACCTGAAGCAGGTGAAGAAGGAGGTGAAAGAAGAGCCTGCAGATGTGGGC ] consensusID : consensus_2676#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [GTTTGATAGTTAAATGTGAGCTGTCCTTGGTTGTCCATGACATTTCAGAATGCGGTGTTAGCTTTCAAGTGAAGAGTTTTATCCCAAAATGTTGCATGTTGACTTTAAACCTCACACTTTGGACTGTGAGACAGAGAAATCCCTTCAACACATGATAAGCATGTACAGTATATTTAAGTTAAAGTCATTGTGATTTGAGTCACTTCCTTCATTTAATAATGAGGACTCAGACTCTTCAGTTGAATGAATGTTGCTGTTTTGTCATTGGACATGTTTCTACCGTCTCCCTGCTTTTGTGCAGACCATGCAGACCTATTCTTCTGTATCCAAAAGTCACTTTATCACTTTTACAGTCATATTAAAGGTTTGTCCAGCTCACACACATCATAGATATTGATGACAACCCTAAATGAAGTTCTTCAAAACCTTTGGGTCTCCACTACATATAATACATTGGGGGACAGC] [+] EMBL FR0055263 [GTTTGATAGTTAAATGTGAGCTGTCCTTGGTTGTCCATGACATTTCAGAATGCGGTGTTAGCTTTCAAGTGAAGAGTTTTATCCCAAAATGTTGCATGTTGACTTTAAACCTCACACTTTGGACTGTGAGACAGAGAAATCCCTTCAACACATGATAAGCATGTACAGTATATTTAAGTTAAAGTCATTGTGATTTGAGTCACTTCCTTCATTTAATAATGAGGACTCAGACTCTTCAGTTGAATGAATGTTGCTGTTTTGTCATTGGACATGTTTCTACCGTCTCCCTGCTTTTGTGCAGACCATGCAGACCTATTCTTCTGTATCCAAAAGTCACTTTATCACTTTTACAGTCATATTAAAGGTTTGTCCAGCTCACACACATCATAGATATTGATGACAACCCTAAATGAAGTTCTTCAAAACCTTTGGGTCTCCACTACATATAATACATTGGGGGACAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2676#0 TCTGTAAGAGCATCTCAACAAAGACTGGTTTTGTTCAAAGAAACCCTTCAGGAACCTGCA 60 consensus_2676#1 ---------------------------------------------------AAACA---A 6 consensus_2676#2 ------------------------------------------------------------ consensus_2676#0 GCTAAAATGGCCACTGAGAAAAGACTCTCTGCAAGACGTAAGCATACACTGAAAAGCTGT 120 consensus_2676#1 ACCAGCACCATGTCTGAGAAGAAGATGTCGTCGAGCCGCAGGCATCATCTGAAGAGTTTG 66 consensus_2676#2 ----GTTTGATAGTTAAATGTGAGCTGTCCTTGGTTGTCCATGACATTTCAGAATGCGGT 56 * * * ** * * * consensus_2676#0 CTGCTGGTCGTGGCTGGAAATTTACTGGAGGCAGAGTCAGTGGTGAAGGTGGA--GGAGA 178 consensus_2676#1 ATGCTGCAAATTGCTGCAAATTGGATTGTTCAGGAGAAAAAGGATACCGCTGC--TGCCA 124 consensus_2676#2 GTTAGCTTTCAAGTGAAGAGTTTTATCCCAAAATGTTGCATGTTGACTTTAAACCTCACA 116 * * * ** * * * * consensus_2676#0 GGGAGAAATACCTGGCAGATAAATGCCCTCCTCTGGAGCTGCCATACTCCAGGGACGAGC 238 consensus_2676#1 AGGAGAGGTACATGGCTGAACAATGTCCTGCCCCGAGTCTAAGTGGAGACCAGGCCGCTC 184 consensus_2676#2 CTTTGGACTGTGAGACAGAGAAATCCCTTCAACACATGATAAGCATGTACAGTAT--ATT 174 * * * * ** *** * * * * * consensus_2676#0 TCATGGAACTCTGTAAACAGCTTCATCAGCAGGTTGGTGTCAGTGAGGAGGAGCGATACT 298 consensus_2676#1 TCATGGAAACCTGCAGAAAACTTCATGCCCTCATTGACAAAGTAGACGAAGAGCGCTATG 244 consensus_2676#2 TAAGTTAAAGTCATTGTGATTTGAGTCACTTCCTTCAT-TTAATAATGAGGACTCAGACT 233 * * ** * * * ** * ** ** * consensus_2676#0 GCATTGAGTTTAAGCTAAACATGGTTCTGAATGAGGTACGAGACCTGAACATAAAGATCG 358 consensus_2676#1 ACCTGCAGACCAAATTGGGAAAGGCCGAAAAAGAGATTGATGACCTGAAGATTAAAGTGA 304 consensus_2676#2 --CTTCAGTTGAA--TGAATGTTGCTGTTT-TGTCATTGGACATGTTTCTACCGTCTCCC 288 * ** ** * * * * * * * consensus_2676#0 TAGATTTGAGGGGAAAGTTCAAAAGACCACGTCTGAA---GAAAGTCCGTATGTC--TGC 413 consensus_2676#1 TTGACCTGGCTGGT--GTGAAGAAGCCCGC-CCTGAA---GAAAGTCCGTATGTC--CGC 356 consensus_2676#2 TGCTTTTGTGCAGACCATGCAGACCTATTCTTCTGTATCCAAAAGTCACTTTATCACTTT 348 * ** * * * * * *** * ****** * * ** consensus_2676#0 TGACGCCATGTTGAAAGCTCTGCTGGGCTCCAAACACACAGTCAACATGGATCTGAGGGC 473 consensus_2676#1 CGATGCCATGTTGAAAGCTCTGCTGGGCTCTAAACACACAGTGAACCTTGACCTGAGGGC 416 consensus_2676#2 TACAGTCATATTAAAGGTT-TGTCCAGCTC-ACACACATCATAGATATTGATGACAACCC 406 * *** ** ** * * ** **** * ***** * * * ** * * consensus_2676#0 TAACTTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAGGACAAGCAGCTCCGTGATGTTGG 533 consensus_2676#1 CAACCTGAAGCAGGTGAAGAAGGAGGTGAAAGAGGAG--CCTGCAG-------ATGTGGG 467 consensus_2676#2 TAAA-TGAAGTTCTTCAAAACCTT--TGGGTCTCCACTACATATAAT------ACATTGG 457 ** ***** * ** * ** * * * * * ** consensus_2676#0 AGACTGGCGTAAGAATGTGGAGGACAAGTCTGACAGGAAGAAGATGTTTGATAGTTAAAT 593 consensus_2676#1 CGACTGGCGGAAGAACATTGAGGACAAAGCCGACAGGAAGAAGATGTTTGAGACCTCATA 527 consensus_2676#2 GGGACAGC---------------------------------------------------- 465 * ** consensus_2676#0 GTGAGCTGT--CCTTGGTTGTCCATGACATTTCAGAATGCGGTGTTAGCTTTCAAGTGAA 651 consensus_2676#1 AACTACTGAAGCCTTTGTTGCAGG------------------------------------ 551 consensus_2676#2 ------------------------------------------------------------ consensus_2676#0 GAGTTTTA 659 consensus_2676#1 -------- consensus_2676#2 -------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |