These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 820 fasta sequence [GGCATTCTTTATCAGGTGGATGTCCTGCTGGGATCGCTCACTGCAGCCTCGCTCAGCCTGGAAACACCTTCTTCTGCTG-GAGCTCACGCCACCCTGAGCCAGGATGC-CCAAAACGGTCAA-CGTGCGCGTC-ACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACCTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC-ACCAAGAGGCTTTTTTTCCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATCTACTGTCCCCCGGAGACCGCCGTGCTTCTGGCCTCGTACGCCATCCAGGTCAAGTACGGCGAGTACGACAAGTCCAAGCATCAAGCGGGTTACCTTTCATCAGAGCGCCTGTTGCCAAGGAGGGTGCTGGAACAGCATCGGCTCTCCAAGGAACAGTGGGAGGACAGGATCCAGGTCTGGCACCAAGAGCATGGAGCCATGCTCAAGGAAGAGGCAATGACCGAATACCTGAAAATCACCCAGGACCTGGAGATGTACGGCATCAATTACTTTGACATCAAGAACAAGAAGGGCACGGACCTGTGGCTGGGGGTCGACGCTCTGGGCATCAACGTCTACGGGAAGCAGGACAAGCTGACGCCCAAAATCGGC] [+] EMBL CA590086 [GGCATTCTTTATCAGGTGGATGTCCTGCTGGGATCGCTCACTGCAGCCTCGCTCAGCCTGGAAACACCTTCTTCTGCTG GAGCTCACGCCACCCTGAGCCAGGATGC CCAAAACGGTCAA CGTGCGCGTC ACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACTTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTCCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATCTACTGTCCCCCGGAGACCGCCGTGCTTCTGGCCTCGTACGCCATCCAGGTCAAGTACGGCGAGTACGACAAGTCCAAGCATCAAGCGGGTTACCTTTCATCAGAGCGCCTGTTGCCAAGGAGGGTGCTGGAACAGCAT ] [+] EMBL CA590149 [ AGCCTCGCTCAGCCTGGATACACCTTCTTCTGCTG GAGCTCACGCCACCCTGAGCCAGGATGC CCAAAACGGTCAA CGTGCGCGTC ACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACTTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTCCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATCTACTGTCCCCCGGAGACCGCCGTGCTTCTGGCCTCGTACGCCATCCAGGTCAAGTACGGCGAGTACGACAAGTCCAAGCATCAAGCGGGTTACCTTTCATCAGAGCGCCTGTTGCCAAGGAGGGTGCTGGAACAGCATCGGCTCTCCAAGGAACAGTGGGAGGACAGGATCCAGGTCTGGCACCAAGAGCATGGAGCCATGCTC ] [+] EMBL FR0059984 [ CCTGGAAACACCTTCTTCTGCTG GAGCTCACGCCACCCTGAGCCAGGATGG GGAGAACGGTCAA CGTGCGCGTC ACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGGCGTCAAAGGAACGACCTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTTCGTTGCAGCTCAAGATGAGGGGCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTTCTGGCAGGGAAGGAGAACATCCTGTCC ] [+] EMBL FR0059733 [ TTCTGCTGTTAGCTCACGCCACTCTGAGCCAGGATGCGGCAAAACGGTCAA CGTGCGCGTC ACTACGATGNACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACTTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTCCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATCTACTGTCCCCCGGAGACCGCCGGGGTTCTGGCCTCGTACGCCATCCAGGTCAA ] [+] EMBL FR0059555 [ TG GAGCTCACGCCACCCTGAGCCAGGATGC CCGGAACGGTCAA CGTGCGCGTC ACTACGGCGGACGCAGAGCTGGAGGTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGTTACTTTGGGCTCCAGTACACGGACTGCAAAGGAACGACCTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATCAACCAAGAGGCTTTTTTTCCTGCAGGGGAAGGA AACATCCTGGCCGAGGA ] [+] EMBL FR0059982 [ CCAGGATGC CCAAAACGGTCAA CGTGCGCGTC ACTACGGTGGACGCGGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACCTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTTCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATTTACTGTCCCCCGGAGACCGCCGTGCTT TGGC ] [+] EMBL FR0059550 [ CAGGATGG GCAAAACTGTCAATCGTGCGCG C ACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGTCCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGGACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACTTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTCCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATC ] [+] EMBL CA588248 [ AAACGGTCAA CGTGCGCGTC ACTACGGTGGACGCAGATCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACCTCCTGGCTGAATCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTACCCTGAGGACGCGGTTGAGGAGCTGATCCAGGACATC ACCAAGAGGCTTTTTTTCCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATCTACTGTCCCCCGGAGACCGCCGTGCTTCTGGCCTCGTACGCCATCCAGGTCAAGTACGGCGAGTACGACAAGTCCAAGCATCAAGCGGGTTACCTTTCATCAGAGCGCCTGTTGCCAAGGAGGGTGCTGGAACAGCATCGGCTCTCCAAGGAACAGTGGGAGGACAGGATCCAGGTCTGGCACCAAGAGCATGGAGCCATGCTCAAGGAAGAGGCAATGACCGAATACCTGAAAATCACCCAGGACCTGGAGATGTACGGCATCAATTACTTTGACATCAAGAACAAGAAGGGCACGGACCTGTGGCTGGGGGTCGACGCTCTGGGCATCAACGTCTACGGGAAGCAGGACAAGCTGACGCCCAAAATCGGC] [+] EMBL FR0060008 [ GTCAA CGTGCGCGTCGAGTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACCTCCTGGCTGAATCCTGACAAGAAGGTGA ] consensusID : consensus_2677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [ACGTGCGCGTCACTACTGAGGACGCAAAGGTGGGAGTTTTCCTTCCAATCGCCAACACCACAAGAAAGAAGTTGTTCTACCAAATTGCTCGGACCATCGGAACTGGGGGGAGACCTGTCTACTTTGGATCTCCAGATACACGGTACGGCAAAGGAACGACTTCCTGGCTGAATCCTGACAACAATGTGATGCCTCTCGACATGAATAAGGAGATTCCGATGCAGATCGAGATGAGGGACTAGTTTTACCCTGACGACGCGGCTGAGGAGCTGATCCAAGACATCACCAAGAGGCTGTTTTTCCTGCAGGTGAAAGAGAACATCCTGTCCGATGACATCTACTGCTCCCCGGAGAGCGTCGTGCTTCTGGACTCATACGCCATCCATGTTAAGTACGGCGAGCACGACAAGTCCAAGCATCAAGCGCCTTACCTTGCATCACAGCGCCTGATGTCAAGGATGGTGGTGGAACAGCATCGGTTCTCCAAGGAACAGCGCGGGGACAGGATCCGGGTCTGGCACAAAGACCATGGAGCCATGTTCAAGGAA] [+] EMBL CA589619 [ACGTGCGCGTCACTACTGAGGACGCAAAGGTGGGAGTTTTCCTTCCAATCGCCAACACCACAAGAAAGAAGTTGTTCTACCAAATTGCTCGGACCATCGGAACTGGGGGGAGACCTGTCTACTTTGGATCTCCAGATACACGGTACGGCAAAGGAACGACTTCCTGGCTGAATCCTGACAACAATGTGATGCCTCTCGACATGAATAAGGAGATTCCGATGCAGATCGAGATGAGGGACTAGTTTTACCCTGACGACGCGGCTGAGGAGCTGATCCAAGACATCACCAAGAGGCTGTTTTTCCTGCAGGTGAAAGAGAACATCCTGTCCGATGACATCTACTGCTCCCCGGAGAGCGTCGTGCTTCTGGACTCATACGCCATCCATGTTAAGTACGGCGAGCACGACAAGTCCAAGCATCAAGCGCCTTACCTTGCATCACAGCGCCTGATGTCAAGGATGGTGGTGGAACAGCATCGGTTCTCCAAGGAACAGCGCGGGGACAGGATCCGGGTCTGGCACAAAGACCATGGAGCCATGTTCAAGGAA] consensusID : consensus_2677#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [TTGGATGACTCACTGCAGCCTCGCTCAGCCTGGAAACACCTCTATCAGCTGGAGCTCACGCCACCCTGAGCCAGGATGCCCAAAACGGTCAACGTGCGCGTCACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACTTCCTGGCTGAGTCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTTAACNCCCTGGAGGGTATCTTTTTTTGTCTTGGAAGGGGAGGCCTGTATCTCCAAGGGACCAATTCACCCAAA] [+] EMBL CA591630 [TTGGATGACTCACTGCAGCCTCGCTCAGCCTGGAAACACCTCTATCAGCTGGAGCTCACGCCACCCTGAGCCAGGATGCCCAAAACGGTCAACGTGCGCGTCACTACGGTGGACGCAGAGCTGGAGTTTTCCTTCCAGCCCAACACCACAGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGGCCTGCGGGAGACCTGGTACTTTGGGCTCCAGTACACGGACGTCAAAGGAACGACTTCCTGGCTGAGTCCTGACAAGAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAAGTTTTTAACNCCCTGGAGGGTATCTTTTTTTGTCTTGGAAGGGGAGGCCTGTATCTCCAAGGGACCAATTCACCCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2677#0 GGCATTCTTTATCAGGTGGATGTCCTGCTGGGATCGCTCACTGCAGCCTCGCTCAGCCTG 60 consensus_2677#1 ------------------------------------------------------------ consensus_2677#2 ----------------------------TTGGATGACTCACTGCAGCCTCGCTCAGCCTG 32 consensus_2677#0 GAAACACCTTCTTCTGCTGGAGCTCACGCCACCCTGAGCCAGGATGCCCAAAACGGTCAA 120 consensus_2677#1 -----------------------------------------------------------A 1 consensus_2677#2 GAAACACCTCTATCAGCTGGAGCTCACGCCACCCTGAGCCAGGATGCCCAAAACGGTCAA 92 * consensus_2677#0 CGTGCGCGTCACTACGGTGGACGCAGAGCTGG-AGTTTTCCTTCCAGCC--CAACACCAC 177 consensus_2677#1 CGTGCGCGTCACTACTGAGGACGCAAAGGTGGGAGTTTTCCTTCCAATCGCCAACACCAC 61 consensus_2677#2 CGTGCGCGTCACTACGGTGGACGCAGAGCTGG-AGTTTTCCTTCCAGCC--CAACACCAC 149 *************** * ******* ** *** ************* * ********* consensus_2677#0 AGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGG--CCTGCGGGAGACCTGG-TA 234 consensus_2677#1 AAGAAAGAAGTTGTTCTACCAAATTGCTCGGACCATCGGAACTGGGGGGAGACCTGTCTA 121 consensus_2677#2 AGGGAAGCAGCTGTTCGACCAGATTGCTCGGACCATCGG--CCTGCGGGAGACCTGG-TA 206 * * *** ** ***** **** ***************** * * ********** ** consensus_2677#0 CTTTGGG-CTCCAG-TACACGG-ACGTCAAAGGAACGACCTCCTGGCTGAATCCTGACAA 291 consensus_2677#1 CTTTGGATCTCCAGATACACGGTACGGCAAAGGAACGACTTCCTGGCTGAATCCTGACAA 181 consensus_2677#2 CTTTGGG-CTCCAG-TACACGG-ACGTCAAAGGAACGACTTCCTGGCTGAGTCCTGACAA 263 ****** ****** ******* *** ************ ********** ********* consensus_2677#0 GAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAA 351 consensus_2677#1 CAATGTGATGCCTCTCGACATGAATAAGGAGATTCCGATGCAGATCGAGATGAGGGACTA 241 consensus_2677#2 GAAGGTGATGTCTCAGGACATGAAGAAGGAGATTCCGTTGCAGCTCAAGATGAGGGTCAA 323 ** ****** *** ******** ************ ***** ** ********* * * consensus_2677#0 GTTTTACCCTGAGGACGCGGCTGAGGAGCTGATCCAGGACATCACCAAGAGGCTTTTTTT 411 consensus_2677#1 GTTTTACCCTGACGACGCGGCTGAGGAGCTGATCCAAGACATCACCAAGAGGCTGTTTTT 301 consensus_2677#2 GTTTT----TAACNCCCTGGA-GGGTATCTTTTTT----TGTCTTGGAAGGGGAGG---- 370 ***** * * * ** * * * ** * ** * ** consensus_2677#0 CCTGCAGGTGAAGGAGAACATCCTGTCCGAGGACATCTACTGTCCCCCGGAGACCGCCGT 471 consensus_2677#1 CCTGCAGGTGAAAGAGAACATCCTGTCCGATGACATCTACTGCTCCCCGGAGAGCGTCGT 361 consensus_2677#2 CCTGTATCTCCAAGGGACCAATTCACCCAAA----------------------------- 401 **** * * * * ** ** ** * consensus_2677#0 GCTTCTGGCCTCGTACGCCATCCAGGTCAAGTACGGCGAGTACGACAAGTCCAAGCATCA 531 consensus_2677#1 GCTTCTGGACTCATACGCCATCCATGTTAAGTACGGCGAGCACGACAAGTCCAAGCATCA 421 consensus_2677#2 ------------------------------------------------------------ consensus_2677#0 AGCGGGTTACCTTTCATCAGAGCGCCTGTTGCCAAGGAGGGTGCTGGAACAGCATCGGCT 591 consensus_2677#1 AGCGCCTTACCTTGCATCACAGCGCCTGATGTCAAGGATGGTGGTGGAACAGCATCGGTT 481 consensus_2677#2 ------------------------------------------------------------ consensus_2677#0 CTCCAAGGAACAGTGGGAGGACAGGATCCAGGTCTGGCACCAAGAGCATGGAGCCATGCT 651 consensus_2677#1 CTCCAAGGAACAGCGCGGGGACAGGATCCGGGTCTGGCACAAAGACCATGGAGCCATGTT 541 consensus_2677#2 ------------------------------------------------------------ consensus_2677#0 CAAGGAAGAGGCAATGACCGAATACCTGAAAATCACCCAGGACCTGGAGATGTACGGCAT 711 consensus_2677#1 CAAGGAA----------------------------------------------------- 548 consensus_2677#2 ------------------------------------------------------------ consensus_2677#0 CAATTACTTTGACATCAAGAACAAGAAGGGCACGGACCTGTGGCTGGGGGTCGACGCTCT 771 consensus_2677#1 ------------------------------------------------------------ consensus_2677#2 ------------------------------------------------------------ consensus_2677#0 GGGCATCAACGTCTACGGGAAGCAGGACAAGCTGACGCCCAAAATCGGC 820 consensus_2677#1 ------------------------------------------------- consensus_2677#2 ------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |