|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 816 fasta sequence
[TGTCTCGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTGCAGGCGATGCAGTGGAGGCCTTCCTGCGCCAGCTGCACAACCCCATCGACTCCCTGCCCGCCCAGCTTTTCCATGTGGTGGTCTTCTCCCTGCTCCTGTCCTACTTTCCCTCACCATACCAGCGCTGGATCTGTTGTAAGAAGGCCCATGAGCTGCTGGAGCTGCACGGCCTGCTGCTCATCATCACGCCCGACTCTTCCCACCAGAACCGCCACGCCTTA]
[+] EMBL CA590041 [TGTCTCGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCT ]
[+] EMBL BU807442 [ CGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATAAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTGC ]
[+] EMBL CA588198 [ CTTGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTGCAGGCGATGCAGTGGAGGCCTTCCTGCGCCAGCTGCACAACCCCATCGACTCCCTGCCCGCCCAGCTTTTCCATGTGGTGGTCTTCTCCCTGCTCCTGTCCTACTTTCCCTCACCATACCAGCGCTGGATCTGTTGTAAGAAGGCCCATGAGCTGCTGGAGCTGCACGGCCTGCTGCTCATCATCACGCCCGACTCTTCCCACCAGAACCGCCACGCCTTA]
[+] EMBL CA590175 [ ATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTT ]
[+] EMBL FR0059557 [ CATCGGAAACATGAACGAGAGGGAGGCTTATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGGCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGGGGGATGAA ]
consensusID : consensus_2680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 807 fasta sequence
[CTCGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGCTGGGTTCAGGGAAGCTACTGGCGAAGGTAGCATCGGTGGTACTATGGACCTCAGGGACAATGTCGAGACAGGAGAAGCGGAAAGCCACCCGGAGTTTTTTTACCTCCCGATCCCGGATGAAGCACCGTGTAAGAGGGAGCAGGAGAAACTGTCAGGAGTCGTCAAAAACCTTCACAGAAAACTGCGCAGGAAATATAAAGAGGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTGCAGGCGATGCA]
[+] EMBL CA591090 [CTCGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGCTGGGTTCAGGGAAGCTACTGGCGAAGGTAGCATCGGTGGTACTATGGACCTCAGGGACAATGTCGAGACAGGAGAAGCGGAAAGCCACCCGGAGTTTTTTTACCTCCCGATCCCGGATGAAGCACCGTGTAAGAGGGAGCAGGAGAAACTGTCAGGAGTCGTCAAAAACCTTCACAGAAAACTGCGCAGGAAATATAAAGAGGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCT ]
[+] EMBL CA589560 [ AACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGCTGGGTTCAGGGAAGCTACTGGCGAAGGTAGCATCGGTGGTACTATGGACCTCAGGGACAATGTCGAGACAGGAGAAGCGGAAAGCCACCCGGAGTTTTTTTACCTCCCGATCCCGGATGAAGCACCGTGTAAGAGGGAGCAGGAGAAACTGTCAGGAGTCGTCAAAAACCTTCACAGAAAACTGCGCAGGAAATATAAAGAGGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCG ]
[+] EMBL FR0059423 [ ACTGGACCCAAGGGATCCACTGACATGCCCATCACAGCTGGGTTCAGGGAAGCTACTGGCGAAGGTAGCATCGGTGGTACTATGGACCTCAGGGACAATGTCGAGACAGGAGAAGCGGAAAGCCACCCGGAGTTTTTTTACCTCCCGATCCCGGATGAAGCACCGTGTAAGAGGGAGCAGGAGAAACTGTCAGGAGGCGTCAAAAACCTTCACAGAAAACTGCGCAGGAAATATAAAGAAGGGGGTGACTTTGACAAGAATTGGCGGGAGCCC ]
[+] EMBL BU806420 [ TGGCGAAGGTAGCATCGGTGGTACTATGGACCTCAGGGACAATGTCGAGACAGGAGAAGCGGAAAGCCACCCGGAGTTTTTTTACCTCCCGATCCCGGATGAAGCACCGTGTAAGAGGGAGCAGGAGAAACTGTCAGGAGTCGTCAAAAACCTTCACAGAAAACTGCGCAGGAAATATAAAGAGGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCTTCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAGTTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTGCAGGCGATGCA]
consensusID : consensus_2680#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 467 fasta sequence
[ACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCGGGGGGAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGGGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCCTGTGCAAGGAGTACTGTCTTTTAGTGCTCTCACCTGATGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCA]
[+] EMBL CA590956 [ACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTGTACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAG GTACAAATCGTCCTGTCTTTTAGTGCTCTCACCTGATGCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGAAAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCGCCATCCGCAGCTCGCTCTCGCA]
[+] EMBL FR0059574 [ ATACATGGGATGCGGGGGGAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACTGGACCCAAGGGATCCACTGACATGCCCATCACAGTGGGGGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACTGACACTGAGTGAATATGCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGCCGGATCGAATGGTGCCGCAGCCTGTGCCAGGAATACT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2680#0 TGTCTCGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTG 60
consensus_2680#2 -----------ACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTG 49
consensus_2680#1 ---CTCGATGAACATGGCATGCTATGAACGGATCTGATGTGGCCTTGAAACTCCTAACTG 57
*************************************************
consensus_2680#0 TACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACT 120
consensus_2680#2 TACATACATGGGATGCGGGGGGAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACT 109
consensus_2680#1 TACATACATGGGATGCAACGGAAACATGAACAGAACGGAGGCCCATCCCTCTGCCACACT 117
**************** ** **************************************
consensus_2680#0 GGACCCAAGGGATCCACTGACATGCCCATCACAG-------------------------- 154
consensus_2680#2 GGACCCAAGGGATCCACTGACATGCCCATCACAG-------------------------- 143
consensus_2680#1 GGACCCAAGGGATCCACTGACATGCCCATCACAGCTGGGTTCAGGGAAGCTACTGGCGAA 177
**********************************
consensus_2680#0 ------------------------------------------------------------
consensus_2680#2 ------------------------------------------------------------
consensus_2680#1 GGTAGCATCGGTGGTACTATGGACCTCAGGGACAATGTCGAGACAGGAGAAGCGGAAAGC 237
consensus_2680#0 ------------------------------------------------------------
consensus_2680#2 ------------------------------------------------------------
consensus_2680#1 CACCCGGAGTTTTTTTACCTCCCGATCCCGGATGAAGCACCGTGTAAGAGGGAGCAGGAG 297
consensus_2680#0 ----------------------------------------------------------TG 156
consensus_2680#2 ----------------------------------------------------------TG 145
consensus_2680#1 AAACTGTCAGGAGTCGTCAAAAACCTTCACAGAAAACTGCGCAGGAAATATAAAGAGGTG 357
**
consensus_2680#0 GGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATAT 216
consensus_2680#2 GGGGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATAT 205
consensus_2680#1 GGTGACTTTGACAAGATCTGGCGTGAGCACTGCGAGGATGAACAGACACTGAGTGAATAT 417
** *********************************************************
consensus_2680#0 GCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGC 276
consensus_2680#2 GCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGC 265
consensus_2680#1 GCCCTGGCCATGAAGAACCTTGCTGACAACCATTGGACAAAAAAATATGAAGGAGAAGGC 477
************************************************************
consensus_2680#0 CGGATCGAATGGTGCCGCAGC--------------------------------------- 297
consensus_2680#2 CGGATCGAATGGTGCCGCAGCCTGTGCAAGGAGTACTGTCTTTTAGTGCTCTCACCTGAT 325
consensus_2680#1 CGGATCGAATGGTGCCGCAGC--------------------------------------- 498
*********************
consensus_2680#0 --GTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGA 355
consensus_2680#2 GCGTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGA 385
consensus_2680#1 --GTGTGCCAGGAATACTTTTTGGATGGTGGGATGAAGAGAATGTTAGAAAAGGATGAGA 556
**********************************************************
consensus_2680#0 AAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCG 415
consensus_2680#2 AAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCG 445
consensus_2680#1 AAAGTGCCAATCTGGCAATGGGTGTGACAGCGCTACCTGCGACTCCACTGCCATACAGCG 616
************************************************************
consensus_2680#0 CCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCT 475
consensus_2680#2 CCATCCGCAGCTCGCTCTCGCA-------------------------------------- 467
consensus_2680#1 CCATCCGCAGCTCGCTCTCGCAGCTGGGCAAAATTCGCCTTCTCGATGTGGGGAGCTGCT 676
**********************
consensus_2680#0 TCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAG 535
consensus_2680#2 ------------------------------------------------------------
consensus_2680#1 TCAACCCTTTCCTGAAGTTTGACGAGTTCCTTACAGTTGGCATTGACATTGTGCCTGCAG 736
consensus_2680#0 TTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTG 595
consensus_2680#2 ------------------------------------------------------------
consensus_2680#1 TTGAGAGTGTTTACAAGTGTGACTTCCTCAACCTTCAGCTTCAGCAGCCGCTTCAGCTTG 796
consensus_2680#0 CAGGCGATGCAGTGGAGGCCTTCCTGCGCCAGCTGCACAACCCCATCGACTCCCTGCCCG 655
consensus_2680#2 ------------------------------------------------------------
consensus_2680#1 CAGGCGATGCA------------------------------------------------- 807
consensus_2680#0 CCCAGCTTTTCCATGTGGTGGTCTTCTCCCTGCTCCTGTCCTACTTTCCCTCACCATACC 715
consensus_2680#2 ------------------------------------------------------------
consensus_2680#1 ------------------------------------------------------------
consensus_2680#0 AGCGCTGGATCTGTTGTAAGAAGGCCCATGAGCTGCTGGAGCTGCACGGCCTGCTGCTCA 775
consensus_2680#2 ------------------------------------------------------------
consensus_2680#1 ------------------------------------------------------------
consensus_2680#0 TCATCACGCCCGACTCTTCCCACCAGAACCGCCACGCCTTA 816
consensus_2680#2 -----------------------------------------
consensus_2680#1 -----------------------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |