These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 676 fasta sequence [GCTGCTTCGGAGCCTTTACCTGTGTGCGTGCGCGCGCTTGTGTTTGTTCGTGAACGTGCGGCGTCCAACTTCCTGCCAAACGGGTTTGACGAGGACACACCTGCGGGAGTAAAAGGGAGCGCTTGGAGCTCGGACGCCATTCTTGCCCGTGTGTGACTTCGGAACCGGACCGATAGAACCTTCGCTTCGGTCGTTTTGCTCGATTTTAATCATGAAAATGTGGATTGTGCTCGTTCTCGCGGGCTTCGCGTTGGGAGCCTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTTCGTTTTGGGGGATGGTGGGGGCAAGCAAACGCTAGAGTGCGATAAATTGATCCCCAAATGCTTCCTAATGAAGGCAGAGATGTATCGAGCCAGGAAGAACCTGGACACTCGTACTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGATGGCATCTATGACCCAGACTGGGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGGGCGGCGAACTGACAAGGGCGACAAGGACCTGAAGTGTGAGAAACTCGTGGAGACGCAGAGAGTAGTTGATCCCGAGGATTGGGGCGGTGGGGCGATT] [+] EMBL FR0058624 [GCTGCTTCGGAGCCTTTACCTGTGTGCGTGCGCGCGCTTGTGTTTGTTCGTGAACGTGCGGCGTCCAACTTCCTGCCAAACGGGTTTGACGAGGACACACCTGCGGGAGTAAAAGGGAGCGCTTGGAGCTCGGACGCCATTCTTGCCCGTGTGTGACTTCGGAACCGGACCGATAGAACCTTCGCTTCGGTCGTTTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCCTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTTCGTTTTGGGGGATGGTGGGGGCAAGCAAACGCTAGAGTGCGATAAATTGATCCCCAAAT ] [+] EMBL FR0058363 [ GTTTTGCTCGATTTTAATCATGAAAATGTGGATTGTGCTCGTTCTCGCGGGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTTCGTTTTGGTGGATGGTGGTGTCAAGCAAACGCTAGAGTGCGATAAATTGATCCCCAAATGCTTCCTAATGAAGGCAGAGATGTATCGAGCCAGGAAGAACCTGGACACTCGTACTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGATGGCATCTATGACCCAGACTGGGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGG GGGCGGCG ] [+] EMBL FR0062024 [ TGATCCCCAAATGCTTCCTAATGAAGGCAGAGATGTATCGAGCCAGGAAGAACCTGGACACTCGTACTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGATGGCATCTATGACCCAGACTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAAGGGCGACAAGGACCTGAAGTGTGAGAAACTCGTGGAGACGCAGAGAGTAGTTGATCCCGAGGATTGGGGCGGTGGGGCGATT] consensusID : consensus_2684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 615 fasta sequence [GACTTCGGAACCGGACCGATAGAACCTTTGCTTCGGTCTTTTTGCTCGATTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATGGTGTCAAGCAAACGCTAGACTGCGATAAATTGATCCCCAAATGCTTC-CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT-GGCATCTATGACCCAGACTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAAGGGCGACAAAGACCTGAAGTGTGAGAAACTCGTGGAGACGCACTTTATCCGGCTGCAGCTCACGCACAAACCAACGCCAGACCCGGGTAAGGGCGCGGATCTGAAAACTGCCATCGCTGAGGGCATTAACAAGCGCTACAAAACTTCACCAGGACCTGGTGAAGGA] [+] EMBL CA588891 [GACTTCGGAACCGGACCGATAGAACCTTTGCTTCGGTCGTTTTGCTCGATTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATGGTGTCAAGCAAACGCTAGACTGCAATAAATTGATCCCCAAATGCTTC CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATAGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT GGCATCTATGACCCAGATTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAAG ] [+] EMBL CA589168 [ TTCGGAACCGGACCGATAGAACCTTTGCTTCGGTCTTTTTGCTCGATTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATAATGTCAAGCAAACGCTAGACTGCGATAAATTGATCCCCAAATGCTTCTCTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT GGCATCTATGACCCAGACTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAAGGGCGACAAAGACCTGAAGTGTGAGAAACTCGTGGAGACGCACTTTATCCGGCTGCAGCTCACGCACAAACCAAC ] [+] EMBL BU807952 [ TTCGGAACCGGACCGATAGAACCTTTGCTTCGTTCTTCCTGCTCGATTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATAATGTCAAGCAAACGCTAGACTGCGATAAATTGATCCCCTTACGTTTT CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCACGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT GGCATCTATGACCCAGACTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAAGGGCGACAAAGACCTGAAGTGTGAGAAACTCGTGGAGACGCACTTTATCCGGGTGCAGCTCACGCACAAACCAACGCCAGACCCGGTTAAGGCCGCGGAT ] [+] EMBL FR0058133 [ TCGATTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCCTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATAATGTCAAGCAAACGCTAGACTGCGATAAATTGATCCCCAAATGCTTC CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT GGCATCTATGACCCAGACTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAA ] [+] EMBL CA589320 [ TTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCTCGTTCTCGCCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTTCGTTTTGGTGGATGGTGGTGTCAAGCAAACGCTAGAGTGCGATAAATTGATCCCCAAATGCTTC CTAATGAAGGCAGAGATGTATCGAGCCAGGAAGAACCTGGACACTCGTACTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT GGCATCTATGACCCAGACTGTGAGAATGATGGCAAATTCAGGGCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGAACTGACAAGGGCGACAAGGACCTGAAGTGTGAGAAACTCGTGGAGACGCACTTTGTCCGGCTGCAGCTCACGCACAAACCAACGCCAAACCCCGGTTAGGGCGCGGATCTGAAAACTGCCATCGCTGAGGGCATTAACAAGCGCTACAAAACTTCACCAGGACCTGGTGAAGGA] [+] EMBL CA589416 [ GAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATGGTGTCAAGCAAACGCTAGACTGCAATAAATTGATCCCCATATTCTTC CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGAT GGCATCTATGACCCAGATTGTGAGAATGATGGCAAATTCAGGGTCAAGCAGTGCAACAACACTGACGAGTGCTGGTGTGTCAACAGCGCCGGTGTGCGGCGAACTGACAAGGGCGACAAAGACCTGAAGTGTGAAAAACTCGTGGAGACGCACTTTATCCGGCTGCAGCTC ] [+] EMBL CA846326 [ GAGCTTCAACTCAGAGCTGTTCCTGTGAAACCATGAAGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATGGTGTCAAGCAAACGCTAGACTGCAATAAATTGATCCCCAAATGCTTC CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGA ] [+] EMBL FR0059037 [ ACTCCGTGCTCCTGTTCTGTTTTGGCGGATGATAATGTCAAGCAAACGCTAGACTGCGATAAATTGATCCCCAAATGCTAC CTAATGAAGGCAGAGATGTATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCTTTGTGGACAACGATGGGCATCTATGACCCAGACTGGGAGAATGATGCCAAATTCAGGGGCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTTGCAACAGCGCCGGCGTGCGG ] consensusID : consensus_2684#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [TTTTAATCATGAAAATGCGGATTTTGCTCGTTCTCGCGCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTAAGTAGTTTCTTCCATTTTAGTTGATAAAACTGTCTTTACACCATTGAAGCGTTATTTGTAAAAGTTCAATTTCACTTTAGCTACAGTATTTTAGAGACGCTTGCAGCGCGCGCCTTTTTCGCACCTCGTTCCGCGAGCCCCACTCGCGGAATTTTCACGCCTCGTTGCTTAATAAATCCCGTGCTTTGCCGCTAATGGCGTTTTGATCGATGAGCTGCCTCCGTGTCTGTGGTTTCTGAGTTGGAAAGTGAGTAGTTGCCGGGAGGGG] [+] EMBL FR0058707 [TTTTAATCATGAAAATGCGGATTTTGCTCGTTCTCGCGCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTAAGTAGTTTCTTCCATTTTAGTTGATAAAACTGTCTTTACACCATTGAAGCGTTATTTGTAAAAGTTCAATTTCACTTTAGCTACAGTATTTTAGAGACGCTTGCAGCGCGCGCCTTTTTCGCACCTCGTTCCGCGAGCCCCACTCGCGGAATTTTCACGCCTCGTTGCTTAATAAATCCCGTGCTTTGCCGCTAATGGCGTTTTGATCGATGAGCTGCCTCCGTGTCTGTGGTTTCTGAGTTGGAAAGTGAGTAGTTGCCGGGAGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2684#0 GCTGCTTCGGAGCCTTTACCTGTGTGCGTGCGCGCGCTTGTGTTTGTTCGTGAACGTGCG 60 consensus_2684#1 ------------------------------------------------------------ consensus_2684#2 ------------------------------------------------------------ consensus_2684#0 GCGTCCAACTTCCTGCCAAACGGGTTTGACGAGGACACACCTGCGGGAGTAAAAGGGAGC 120 consensus_2684#1 ------------------------------------------------------------ consensus_2684#2 ------------------------------------------------------------ consensus_2684#0 GCTTGGAGCTCGGACGCCATTCTTGCCCGTGTGTGACTTCGGAACCGGACCGATAGAACC 180 consensus_2684#1 ----------------------------------GACTTCGGAACCGGACCGATAGAACC 26 consensus_2684#2 ------------------------------------------------------------ consensus_2684#0 TTCGCTTCGGTCGTTTTGCTCGATTT---------TAATCATGAAAATGTGGATTGTGCT 231 consensus_2684#1 TTTGCTTCGGTCTTTTTGCTCGATTTGCTCGATTTTAATCATGAAAATGTGGATTTTGCT 86 consensus_2684#2 --------------------------------TTTTAATCATGAAAATGCGGATTTTGCT 28 ************** ***** **** consensus_2684#0 CGTTCTCGC-GGGCTTCGCGTTGGGAGCCTCAGCTCAGAGCTGTTCCTGTGAAACCATGA 290 consensus_2684#1 CGTTCTCGC-CAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTTCCTGTGAAACCATGA 145 consensus_2684#2 CGTTCTCGCGCAGCTTCGCGTTGGGAGCTTCAGCTCAGAGCTGTAA--GTAGTTTCTTCC 86 ********* **************** *************** ** * * consensus_2684#0 AGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTTCGTTTTGGGGGATGGTGGGGGCA 350 consensus_2684#1 AGTGGGCCACTTGCGATGGAACTCCGTGCTCCTGTTCTGTTTTGGTGGATGATGGTGTCA 205 consensus_2684#2 ATT---TTAGTTG--ATAAAACT----GTCTTTACACCATT--GAAGCGTTATTTGTAAA 135 * * * *** ** **** * * ** * * * * * consensus_2684#0 AGCAAACGCTAGAGTGCGATAAATTGATCCCCAAATGCTTCCTAATGAAGGCAGAGATGT 410 consensus_2684#1 AGCAAACGCTAGACTGCGATAAATTGATCCCCAAATGCTTCCTAATGAAGGCAGAGATGT 265 consensus_2684#2 AGTTCAATTTCACTTTAGCTACAGTATTTTAGAGACGCTTGCAGCGCGCGCCTTTTTCGC 195 ** * * * * ** * * * * * **** * * * * consensus_2684#0 ATCGAGCCAGGAAGAACCTGGACACTCGTACTATTGGAGGAAAGCCGGTTGAGACCGCCT 470 consensus_2684#1 ATCAAGCCAGGAAGTACCCAGGCATGCGTATTATTGGAGGAAAGCCGGTTGAGACCGCCT 325 consensus_2684#2 ACCTCGTTCCGCGAGCCCCA--CTCGCGGAATTTTCACGCCTCGTTGCTTAATAAATCCC 253 * * * * ** * ** * * ** * * * ** * * ** consensus_2684#0 TTG--TGGACAACGATGGCATCTATGACCCA--GACTGGGAGAATGATGGCAAATTCAGG 526 consensus_2684#1 TTG--TGGACAACGATGGCATCTATGACCCA--GACTGTGAGAATGATGGCAAATTCAGG 381 consensus_2684#2 GTGCTTTGCCGCTAATGGCGTTT-TGATCGATGAGCTGCCTCCGTGTCTGTGGTTTCTGA 312 ** * * * ***** * * *** * * *** ** * *** * consensus_2684#0 GCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGGGCGGCGA 586 consensus_2684#1 GCCAAGCAGTGCAACAACACCGACGAGTGCTGGTGTGTCAACAGCGCCGGCGTGCGGCGA 441 consensus_2684#2 GTTGGAAAGTGAGTAGTTGCCGGGAGGGG------------------------------- 341 * **** *** * * consensus_2684#0 ACTGACAAGGGCGACAAGGACCTGAAGTGTGAGAAACTCGTGGAGACGCA--------GA 638 consensus_2684#1 ACTGACAAGGGCGACAAAGACCTGAAGTGTGAGAAACTCGTGGAGACGCACTTTATCCGG 501 consensus_2684#2 ------------------------------------------------------------ consensus_2684#0 GAGTAGTTGATCCCGAG----------GATTGGGGCGGTGGGGCGATT------------ 676 consensus_2684#1 CTGCAGCTCACGCACAAACCAACGCCAGACCCGGGTAAGGGCGCGGATCTGAAAACTGCC 561 consensus_2684#2 ------------------------------------------------------------ consensus_2684#0 ------------------------------------------------------ consensus_2684#1 ATCGCTGAGGGCATTAACAAGCGCTACAAAACTTCACCAGGACCTGGTGAAGGA 615 consensus_2684#2 ------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |