These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 609 fasta sequence [CCAGGGAGGATGGCGGAGGGTGGTGGTACAACCGCTGCCACTCTTCGAACCCCAACGGCCGCTACTACATGGGCGGAGCCTATACAAGGTACATGGCCAAGCACGGCACAGATGATGGCGTGGTCTGGATGAACTGGAAGGGGAGCTGGTATTCACTGAAGACCATCAGCATGAAGATTCGACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAAGGCGATTGCGCAAGAGGAACTGTCAAGATAAAAGATCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATAAAAGCATGACAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAATAAAAAAAAAACATAAAAAAAAAACGACCTGAAAAAAAAATCTGGGACGCTGGCTGAAGGCCGAACGGATCGGTGTTCCTGCTGCCCATGCAGACCGTCTACCCTGGAATAACTTCACACGTGCATGTGCAGATGTGTGACAAATCTGACCCCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGTGTTGTCCTGAAGCTCGCAACTTCATTCATTCTTGCCTT] [+] EMBL CA330893 [CCAGGGAGGATGGCGGAGGGTGGTGGTACAACCGCTGCCACTCTTCGAACCCCAACGGCCGCTACTACATGGGCGGAGCCTATACAAGGTACATGGCCAAGCACGGCACAGATGATGGCGTGGTCTGGATGAACTGGAAGGGGAGCTGGTATTCACTGAAGACCATCAGCATGAAGATTCGACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAAGGCGATTGCGCAAGAGGAACTGTCAAGATAAAAGATCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATAAAAGCATGAC ] [+] EMBL CA330926 [ TGGTACAACCGCTGCCACTCTTCGAACCCCAACGGCCGCTACTACATGGGCGGAGCCTATACAAGGTACATGGCCAAGCACGGCACAGATGATGGCGTGGTCTGGATGAACTGGAAGGGGAGCTGGTATTCACTGAAGACCATCAGCATGAAGATTCGACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAAGGCGATTGCGCAATATTAACTGTCAAGATAAAAGATCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATAAAAGCATGAC ] [+] EMBL FR0057902 [ CAAGAGGAACTGTCAAGATAAAAGTGCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATAAAAGCATGACAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAATAAAAAAAAAACATAAAAAAAAAACGACCTGAAAAAAAAATCTGGGACGCTGGCTGAAGGCCGAACGGATCGGTGTTCCTGCTGCCCATGCAGACCGTCTACCCTGGAATAACTTCACACGTGCATGTGCAGATGTGTGACAAATCTGACCCCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGTGTTGTCCTGAAGCTCGCAACTTCATTCATTCTTGCCTT] consensusID : consensus_2714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 478 fasta sequence [CTACAGCAGAGTATACGCTCAGGGTCTGCTCAGAGGAAGAAGGGTTCCCCCTACATGTGTCGGGGTACTCTGGGGAGGGGGGCGATGCCCTAGTGCTGTCCGGGTCAGATATGGCACCGTCCTTGTCACACGACGGGATGAAGTTCAGCACTTTCGACAAGGACAATGATAAGTGGGACCAGAACTGTGCAGAGGTGTACGGGGGAGGGTGGTGGTACAACAGGTGCCA-GTCAGCCAATCTCAATGGCGTTTATTATCGAGGTTCGTACAACCCAGAGAAAAACCCAGCAGTCCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAAAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAATCAATAAATACTCGTGCTCACTTCAA] [+] EMBL CA330131 [CTACAGCAGAGTATACGCTCAGGGTCTGCTCAGAGGAAGAAGGGTTCCCCCTACATGTGTCGGGGTACTCTGGGGAGGGGGGCGATGCCCTAGTGCTGTCCGGGTCAGATATGGCACCGTCCTTGTCACACGACGGGATGAAGTTCAGCACTTTCGACAAGGACAATGATAAGTGGGACCAGAACTGTGCAGAGGTGTACGGGGGAGGGTGGTGGTACAACAGGTGTTATGTTAGCCAATCTCAATGGCGTTTATTATCGAGGTTCGTACAACCCAGAGAAAAACCCAGCAGTCCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAAAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCA ] [+] EMBL CA333605 [ TCAGAGGAAGAAGGGTTCCCCCTACATGTGTCGGGGTACTCTGGGGAGGGGGGCGATGCCCTAGTGCTGTCCGGGTCAGATATGGCACCGTCCTTGTCACACGACGGGATGAAGTTCAGCACTTTCGACAAGGACAATGATAAGTGGGACCAGAACTGTGCAGAGGTGTACGGGGGAGGGTGGTGGTACAACAGGTGCCA GTCAGCCAATCTCAATGGCGTTTATTATCGAGGTTCGTACAACCCAGAGAAAAACCCAGCAGTCCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAAAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAATCAATAAATACTCGTGCTCA ] [+] EMBL CA333596 [ GCAGTCCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAAAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAATCAATAAAT ] [+] EMBL CA333632 [ CCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAAAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAATCAATAAATACTCGTGCTCACTTCAA] [+] EMBL CA333556 [ CCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAAAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAATCAATAAATACTCGTGCTCA ] [+] EMBL CA333646 [ AAGCTGTGAGAATGTTCATCAGATCAGCTGCTTTTTAATTTTTTCTGTCCATCAGCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAATCAATAAATACTCGTGCTCA ] consensusID : consensus_2714#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [GTCTGGATATCGCGTGCAGTGATGGCGCCGTCGTCTATGCTCCATTTGATGTGACACTCAATGGACGGGTTATTGTCTACACCGACCCCGCGAAGAAGGCCATCAACGACGGCATCAACCTGAGAGGAGAAAATCTCTGTTTCAAGCTGTTCTACGTCCGTCCTGATAAAGTCTCTGGGACGCTGAGGAAGGGCGAACGGATCGGGGTCCTGCTGCCCATGCAGACCGTCTACCCTGGAATAACTTCACACGTGCATGTGCAGATGTGTGACAAATCTGACCCCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGTGTTGTCCTGAAGCTCGCAGCTTCATTCATTCTTGCATTCTTTAATAAAAGCAAAAGCAAAAGTGTTAAAAAAAA] [+] EMBL FR0057897 [GTCTGGATATCGCGTGCAGTGATGGCGCCGTCGTCTATGCTCCATTTGATGTGACACTCAATGGACGGGTTATTGTCTACACCGACCCCGCGAAGAAGGCCATCAACGACGGCATCAACCTGAGAGGAGAAAATCTCTGTTTCAAGCTGTTCTACGTCCGTCCTGATAAAGTCTCTGGGACGCTGAGGAAGGGCGAACGGATCGGGGTCCTGCTGCCCATGCAGACCGTCTACCCTGGAATAACTTCACACGTGCATGTGCAGATGTGTGACAAATCTGACCCCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGTGTTGTCCTGAAGCTCGCAGCTTCATTCATTCTTGCATTCTTTAATAAAAGCAAAAGCAAAAGTGTTAAAAAAAA] consensusID : consensus_2714#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 373 fasta sequence [TCAGATCAATCACATTTGAACAGTAGAAAATCAAACTCAAACTTGAAGCTGATGGACAGAAAAAATTAAAAAGCAGCTGATCTGATGAACATTCTCACAGCTTTCAGGCTGTAGCTGCTGTTGAATGTTGACCACACAACGCCATTGTGGACTGCTGGGTTTTTCTCTGGGTTGTACTCGTGCCGAATTCGGCACGAGGAAGATTCGACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAAGGCGATTGCGCAAGAGGAACTGTCAAGATAAAAGTTCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATAAAAGCATGACAGACAAAGAGAAAAGAAAAACCCCGGGGGGGGGCCCGGGACCCAA] [+] EMBL FR0057842 [TCAGATCAATCACATTTGAACAGTAGAAAATCAAACTCAAACTTGAAGCTGATGGACAGAAAAAATTAAAAAGCAGCTGATCTGATGAACATTCTCACAGCTTTCAGGCTGTAGCTGCTGTTGAATGTTGACCACACAACGCCATTGTGGACTGCTGGGTTTTTCTCTGGGTTGTACTCGTGCCGAATTCGGCACGAGGAAGATTCGACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAAGGCGATTGCGCAAGAGGAACTGTCAAGATAAAAGTTCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATAAAAGCATGACAGACAAAGAGAAAAGAAAAACCCCGGGGGGGGGCCCGGGACCCAA] [+] EMBL CA330899 [ AATCAAACTCAAACTTGAAGCTGATGGACAGAAAAAATTAAAAAGCAGCTGATCTGATGAACATTCTCACAGCTTTCAGGCTGTAGCTGCTGTTGAATGTTGACCACACAACGC ] consensusID : consensus_2714#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [GTTACGGTGAAAACTACTGTTAACATTAAAAGGATAATTTATTTGGAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAGTTTTGGTCCCTTTAAGGGGGGGTTAAACCTGAGAGGAGAAAATCTCTGTTTCAAGCTGTTCTACGTCCGTCCTGATAAAGTCTCTGGGACGCTGAGGAAGGGCGAACGGATCGGGGTCCTGCTGCCCATGCAGACCGTCTACCCTGGAATAACTTCACACGTGCATGTGCAGATGTGTGACAAATCTGACCCCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGCGTTGCCCTGAAGCTCGCAACTTTATTCATTCTTG] [+] EMBL FR0057923 [GTTACGGTGAAAACTACTGTTAACATTAAAAGGATAATTTATTTGGAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCCGGACCCCAGTTTTGGTCCCTTTAAGGGGGGGTTAAACCTGAGAGGAGAAAATCTCTGTTTCAAGCTGTTCTACGTCCGTCCTGATAAAGTCTCTGGGACGCTGAGGAAGGGCGAACGGATCGGGGTCCTGCTGCCCATGCAGACCGTCTACCCTGGAATAACTTCACACGTGCATGTGCAGATGTGTGACAAATCTGACCCCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGCGTTGCCCTGAAGCTCGCAACTTTATTCATTCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2714#2 ------------------------------------------------------------ consensus_2714#4 ------------------------------------------------------------ consensus_2714#0 CCAGGGAGGATGGCGGAGGGTGGTGGTACAACCGCTGCCACTCTTCGAACCCCAACGGCC 60 consensus_2714#3 ------------------------------------------------------------ consensus_2714#1 ------------------------------------------------------------ consensus_2714#2 ------------------------------------------------------------ consensus_2714#4 ------------------------------------------------------------ consensus_2714#0 GCTACTACATGGGCGGAGCCTATACAAGGTACATGGCCAAGCACGGCACAGATGATGGCG 120 consensus_2714#3 ------------------------------------------------------------ consensus_2714#1 ------------------CTACAGCAGAGTATACGCTCAGGGTCTGCTCAGAGGAAGAAG 42 consensus_2714#2 ------------------------------------------------------------ consensus_2714#4 ------------------------------------------------------------ consensus_2714#0 TGGTCTGGATGAACTGGAAGGGGAGCTGGTATTCACTGAAGACCATCAGCATGAAGATTC 180 consensus_2714#3 ------------------------------------------------------------ consensus_2714#1 GGTTCCCCCTACATGTGTCGGGGTACTCTGGGGAGGGGGGCGATGCCCTAGTGCTGTCCG 102 consensus_2714#2 ---------------------------------------GT---CTGGATATCGCGTGCA 18 consensus_2714#4 -----------------------------------------------GTTACGGTGAAAA 13 consensus_2714#0 GACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAA---GGCGATTGCGCAAGAG 237 consensus_2714#3 -------------------------------------TCAG---ATCAATCACATTTGAA 20 consensus_2714#1 GGTCAGATATGGCACCGTCCTTGTCACACGACGGGATGAAGTTCAGCACTTTCGACAAGG 162 * consensus_2714#2 GTGATGGCGCCGTCGTCT--ATGCTCCATTTGATGTGA--------CACTCAATG-GACG 67 consensus_2714#4 CTACTGTTAACATTAAAAGGATAATTTATTTGGAAAAA--------AAAAAAAAA-AAAA 64 consensus_2714#0 GAACTGTCAAGATAAAAGATCGAGTGCAGCTGATAAGAGCTCTCCCTTCACAATA-AAAG 296 consensus_2714#3 -CAGTAGAAAATCAAACTCAAACTTGAAGCTGATGGACAGA---AAAAATTAAAA-AGCA 75 consensus_2714#1 ACAATGATAAGTGGGACCAGAACTGTGCAGAGGTGTACGGGGGAGGGTGGTGGTACAACA 222 * * consensus_2714#2 GGTTATTGTCTACACCG-ACCCCGCGAAGAAGGCCATCAACGACGGCATCAACCTGAGAG 126 consensus_2714#4 CCTCGGGGGGGGCCCCGGACCCCAGTTTTGGTCCCTTTAAGGGGGGGTTAAACCTGAGAG 124 consensus_2714#0 CATGACAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAA 356 consensus_2714#3 GCTGATCTGATGAACATTCTCACAGCTTTCAGGCTGT-AGCTGCTGTTGAATGTTGACCA 134 consensus_2714#1 GGTGCCAGTCAGCCAATCTCAATGGCGTTTA--TTATCGAGGTTCGTACAACCCAGAGAA 280 * * * consensus_2714#2 GAGAAAATCTCTGTTTCAAGCTGT-TCTACGTC--CGTCCTGATAAAGTC---TCTGGGA 180 consensus_2714#4 GAGAAAATCTCTGTTTCAAGCTGT-TCTACGTC--CGTCCTGATAAAGTC---TCTGGGA 178 consensus_2714#0 AAAAAAAAAATAAAAAAAAAACAT-AAAAAAAAAACGACCTGAAAAAAAAA--TCTGGGA 413 consensus_2714#3 CACAACGCCATTGTGGACTGCTGGGTTTTTCTCTGGGTTGTACTCGTGCCGAATTCGGCA 194 consensus_2714#1 AAACCCAGCAGTCCACAATGGCGTTGTGTGGTCAACATTCAACAGCAGCTACAGCCTGAA 340 * * * consensus_2714#2 CGCTGAG-----GAAGGGCGAACGGATCGGG---GT-CCTGCTGCCCATGCAGACCGTCT 231 consensus_2714#4 CGCTGAG-----GAAGGGCGAACGGATCGGG---GT-CCTGCTGCCCATGCAGACCGTCT 229 consensus_2714#0 CGCTGGCT----GAAGGCCGAACGGATCGGT---GTTCCTGCTGCCCATGCAGACCGTCT 466 consensus_2714#3 CGAGGAAGATTCGACCGTTCTTTGCATCAAAATAGTCCCATAAGGAGAATCAAGGCGATT 254 consensus_2714#1 AGCTGTGA----GAATGTTCATCAGATCAGC---TGCTTTTTAATTTTTTCTGTCCATCA 393 * * ** * *** * * consensus_2714#2 ACC-CTGGAATAACTTCACACGTGCA-TGTGCAGATGTG--TGAC--AAA---TCTGACC 282 consensus_2714#4 ACC-CTGGAATAACTTCACACGTGCA-TGTGCAGATGTG--TGAC--AAA---TCTGACC 280 consensus_2714#0 ACC-CTGGAATAACTTCACACGTGCA-TGTGCAGATGTG--TGAC--AAA---TCTGACC 517 consensus_2714#3 GCG-CAAGAGGAACTGTCAAGATAAA-AGTTCGAGTGCAGCTGAT--AAGAGCTCTCCCT 310 consensus_2714#1 GCTTCAAGTTTGAGTTTGATTTTCTACTGTTCAAATGTGATTGATCTGAATGAACTCAAT 453 * * * * * * * ** * ** *** * ** consensus_2714#2 CCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGTGTTGTC 342 consensus_2714#4 CCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGCGTTGCC 340 consensus_2714#0 CCACAGGATATTTCTGATGAGCTGAAGAGGCAACATAACCAATGGCACTCTGGTGTTGTC 577 consensus_2714#3 TCACAATAAAAGCATGAC-AGACAAAGAGAAAAGAAAAAC-------CCCGGGGGGGGGC 362 consensus_2714#1 CAATAA-ATACTCGTGCTCACTTCAA---------------------------------- 478 * * * * ** * ** consensus_2714#2 CTGAAGCTCGCAGCTTCATTCATTCTTGCATTCTTTAATAAAAGCAAAAGCAAAAGTGTT 402 consensus_2714#4 CTGAAGCTCGCAACTTTATTCATTCTTG-------------------------------- 368 consensus_2714#0 CTGAAGCTCGCAACTTCATTCATTCTTGCCTT---------------------------- 609 consensus_2714#3 CCGGGACCCAA------------------------------------------------- 373 consensus_2714#1 ------------------------------------------------------------ consensus_2714#2 AAAAAAAA 410 consensus_2714#4 -------- consensus_2714#0 -------- consensus_2714#3 -------- consensus_2714#1 -------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |