These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 381 fasta sequence [AATTCGGCACGAG-------GACAAGATGGGCCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCTACATGGAATAATTCAGC-ACTGCAAATAAATTGTTTTTTGTCCAAACTTAAAAAAAAAAAAAAAGAAAAGAAAAAAAAAAGAAAAATAAAAAAAAAATAGAAAAACCCCCCGGGGGGGGCCCCCAACCACTTTTTT] [-] EMBL CA588767 [AATTCGGCACGAG GACAAGATGGGCCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAAGGAAGTCCTGAATGCCAATCTACATGGAATAATTCACCTACAGCGAATAAA ] [-] EMBL CA588707 [AATTCGGCACGAGCGAACGAGACAAGATGGGCCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGT ] [+] EMBL CA330590 [ GGCCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCTACATGGAATATTTCTTC ACTGCAAATAAATTGTTTTTT ] [+] EMBL FR0055188 [ TAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCTACATGGAATAATTCAGC ACTGCAAATAAATTGTTTTTTGTCCAAACTTAAAAAAAAAAAAAAAGAAAAGAAAAAAAAAAGAAAAATAAAAAAAAAATAGAAAAACCCCCCGGGGGGGGCCCCCAACCACTTTTTT] consensusID : consensus_2798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 322 fasta sequence [CCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA-GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT-CTACATGGAATAATTCAGCACT--GCAAATAAATTGTTTTTTGTCCAAACTT---------AAAAAA-----AAAAAAAAAAAA--CC-CGGGGGGGGGCCCGGTACCCAGTTTTTGGCCC] [+] EMBL FR0056959 [CCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACCGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGTTTTTTGTCCAAACTT AAAAAA AAAAAAAAAAAA CCTCGAGGGGGGGCCCGGTACCAAGCTTTTGGC ] [+] EMBL FR0055558 [ CATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGGCTGATCCGCAAATACGGGCTGAGCATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGCGATGGATCCAGTGAAGTCCTGAGTGCCAAT CTACATGGAATAATTCAGCACT GCACATAAATTGTTTTTTGTCCAAACTT ACATGA AATAAATCAGCA CT CGAGGGGGGGCCCGGTACCCAGATTTT ] [+] EMBL CA844723 [ CATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTTCCGTCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGTTTTTTGTCCAAACTT A ] [+] EMBL CA847003 [ CTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACCGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGTTTTTT ] [+] EMBL FR0056424 [ TCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGTTTTTTGTCCAAAAAA AAAAAA AAAAAAAAAAAAACCC CCGGGGGGGCCCCGGAACCCAATTTTTTGCC ] [+] EMBL CA330553 [ CACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGTTTTTTGTCCAAACT ] [+] EMBL CA845489 [ CACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACCGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGTTTTTTGTCCAAA ] [+] EMBL FR0056055 [ CCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGTTTTTTGTCC AAAAAA AAAAAAAAAAAC CC CGAGGGGGGCCCGGGTACCAAGTTTTGGTCCC] [+] EMBL FR0056034 [ CTAGAACGTTCGGTCAGGGATCCCGATCCTGCCGGATATGCTCACACATGACACGGACTGATCCGCAATTCCGGGCTGAGCATGTGCCGCCAGTGCTTCAGGCAGTACGCTTTAGGCATCGGCATCGTTAAGCTGGTCTGAACACTTTGGGCTGTCATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGGTTTTTGTCCAAACTT AACAAA AAGGAAAAAAAC CC CGGGGGGGGCCCGGGCACCAAGTTTTGGTCC ] [+] EMBL CA330482 [ GAAAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGTTTTTTGTCCAA ] [+] EMBL FR0056028 [ AAGTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGTTTTTTGTCCAAACTT AAAAAAAAAACAAAAAAAAAAAA CC CCGGGGGGGGCCCGGTTACCAATTTTTG ] [+] EMBL FR0056888 [ GTTCGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGTTTTTTGTCCAAACTT AAAAAA AAAAAAAAAAAC CT CGAGGGGGGGCCCGGTACCCAGCTTTTG ] [+] EMBL FR0056536 [ GGGATCCCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCCTACATGGAATAATTCAGCACT GCAAATAAATTGT ] [+] EMBL FR0056687 [ CCGATCCTGCCGGGTATGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGGTCCAATGAAATCCTGAATGGCAAT CTACATGGGATAATTCAACACTGGGAATATAAATTGTTTTTTGCCC AAAAA AGAGGAAAGAAC CC CCGGGGGGGGCCCGGTACCCAATTTTTG ] [+] EMBL CA845321 [ gcacgaGCTCAAACA GACACGGACTGATCCGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGTTTTTTGTCCAAACT ] [+] EMBL FR0056666 [ CGCAAATACGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACGCTAAAGACATCGGCTTCGTTAAGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAAT CTACATGGAATAATTCAGCACT GCAAATAAATTGTTTTTTGTCCAAACTTAAAAAAAAAAAAAAA AAAAAAAAAAAA CC CCGGGGGGGGCCCGGGACCCAATTTTTGGGCC] consensusID : consensus_2798#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence [AGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCTACATGGAATAATTCAGCACTGCAAATAAATTGTTTTTTGTCCAA] [+] EMBL CA330493 [AGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATGCCAATCTACATGGAATAATTCAGCACTGCAAATAAATTGTTTTTTGTCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2798#0 AATTCGGCACGAGGACAAGATGGGCCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTT 60 consensus_2798#1 ------------------------CCATCAGCAGCTCTATTGGAGTCACCCTAGAAAGTT 36 consensus_2798#2 ------------------------------------------------------------ consensus_2798#0 CGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATA 120 consensus_2798#1 CGGCCAGGGATCCCGATCCTGCCGGGTATGCTCAAACAGACACGGACTGATCCGCAAATA 96 consensus_2798#2 ------------------------------------------------------------ consensus_2798#0 CGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACG-CTAAAGACATCGGCTTCGTTA 179 consensus_2798#1 CGGGCTGAACATGTGCCGCCAGTGCTTCAGGCAGTACG-CTAAAGACATCGGCTTCGTTA 155 consensus_2798#2 -----AGCAGCTCTATTGGAGTCACCCTAGAAAGTTCGGCCAGGGATCCCGATCCTG--- 52 * * * * * * ** *** ** * * ** ** * consensus_2798#0 AGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATG 239 consensus_2798#1 AGCTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATG 215 consensus_2798#2 --CTGGACTGAACACTTTGGACTGACATGTCCGGAGATGGATCCAGTGAAGTCCTGAATG 110 ********************************************************** consensus_2798#0 CCAATCTACATGGAATAATTCAGCACTGCAAATAAATTGTTTTTTGTCCAAACTTAAAAA 299 consensus_2798#1 CCAATCTACATGGAATAATTCAGCACTGCAAATAAATTGTTTTTTGTCCAAACTTAAAAA 275 consensus_2798#2 CCAATCTACATGGAATAATTCAGCACTGCAAATAAATTGTTTTTTGTCCAA--------- 161 *************************************************** consensus_2798#0 AAAAAAAAAAGAAAAGAAAAAAAAAAGAAAAATAAAAAAAAAATAGAAAAACCCCCCGGG 359 consensus_2798#1 AAAAAAAAAA--AAACCCGGGGGGGGGCCCGGTACCCAGTTTTTGGCCC----------- 322 consensus_2798#2 ------------------------------------------------------------ consensus_2798#0 GGGGGCCCCCAACCACTTTTTT 381 consensus_2798#1 ---------------------- consensus_2798#2 ---------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |