These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 528 fasta sequence [GCACGAGGGAAGATCTGTTCTGCATCCGCCTGGGAAAACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA-AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC---TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT-AAAAAAGATGCTCAATAAAAATTTAAACTCGAAAAAAAAAAAAAAAAAAAAAAACCCGGGGGGGGCCCGGGACCCAAGTTTTGGGC] [+] EMBL CA847263 [GCACGAGGGAAGATCTGTTCTGCATCCGCCTGGGAAAACCATTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGTAAAAAAAGATGCTCAATAAAAATT ] [+] EMBL CA846767 [ CTGCATCCGCCTGGGAAAACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGTAAAAAAAGATGCTCAATAAAAATTT ] [+] EMBL CA846432 [ CATCCGCCTGGGAAAACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTCGAAA ] [+] EMBL CA844582 [ TCCGCCTGGGAAAACAAGTGCTGACCCTCTGCACATATGAGAGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACT ] [+] EMBL CA330298 [ CGCCTGGGAAAACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGTAAAAAAAGATGCTCAATAAAAATTTAAA ] [+] EMBL CA333528 [ GGGAAAACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAA ] [+] EMBL CA847173 [ ctGGGAAACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTC ] [+] EMBL FR0056287 [ ACAAGTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTCGAAAAAGAAAAAAAGAAGA ] [+] EMBL FR0055634 [ ACAAGTGCTGAGCCTCTGCAGACATGAGTGCCAGACCAGACATCAC AGAGGTCACATGCTTTGACAGGACCATACTGGAGAAGACTGATACTCGGGAGAGCACCACATTGCCAGCANAAGAAACAGTCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAACATGACCCCTGGAACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGGCTCATCTGAGGGACCTACACTTTGGA ] [+] EMBL FR0057596 [ GTGCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAGCTGAAGAAGACTGATACTCGGGAGAAAAACACATTGCCAACAAAAGAAACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAACTCTTCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTT ] [+] EMBL FR0057203 [ GCTGACCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTCGAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL FR0057125 [ CCCTCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTCGAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGGGACCCAAGTTTTGGGC] [+] EMBL FR0062685 [ TCTGCAGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGGTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGGTGCTTGTAAATTAAGTTTCTTGAAGATCTGGAATACAAGTT ] [+] EMBL FR0057486 [ AGACATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAG ] [+] EMBL FR0057421 [ ATGAGTGACAAACCAGACATCAA AGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGTAAAAAAAGATGCTCAATAAAAATTTAAACTCGAAAAAAAAAAGAGAGGA ] [+] EMBL FR0055572 [ CCAGACATCAATGGAGGTCACACCCTTTGACAGGACCAAACTGAAGAAGACTGATACTCGGGAGAACAACACATTGCCATCAGAAGAAACAATCGAACAGGAGAAGTCTGGATAATGCTCTGGTACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAACATGTCCCCTGGAACATTATGGAAGTGACCTGTCATGATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGGCTCATCTGAGGGACCTACACTTTGCACAACGCCTGGCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGC TAAAAAGATGCTC ] [+] EMBL FR0057477 [ CCAGACATCAA GGAGGTCACAACCTTTGACAAGACCAAACTGAAGAAGACTGATACTCAGGAGAAAAACACATTGCCAACAAAAGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGGATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTCGAAAAAAAAAAAAAA ] [+] EMBL CA330418 [ AGAGACAATCGAACAGGAGAAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTCAGAATCATTCATCTAAC TCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGTTCTACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAAC ] [+] EMBL CA845251 [ GACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAACTCG ] [+] EMBL CA330372 [ GGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGT AAAAAAGATGCTCAATAAAAATTTAAAC ] consensusID : consensus_2801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [TTTTTCAGTGGTGGGTAAAGTATGTATTCTTTAGCAATGAGAAGTTTGGGTTTTTTCAGCTGAAACTTGTATATTATGCTGATGTACAGGAATAAACCTGAAAATCTCTTATGAATAAACAATCGAACAGGAGAAGTCAGCCTCAAGGGGGGGCCCGGTTTCCACATTGGGCACCCTTTTTCGTGAGGTATTCAGAATCATTCATCTAACTCAAGATGTGGCTTGCTAAAATGTCTCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGTAAAAGAGATGCTC] [+] EMBL FR0056289 [TTTTTCAGTGGTGGGTAAAGTATGTATTCTTTAGCAATGAGAAGTTTGGGTTTTTTCAGCTGAAACTTGTATATTATGCTGATGTACAGGAATAAACCTGAAAATCTCTTATGAATAAACAATCGAACAGGAGAAGTCAGCCTCAAGGGGGGGCCCGGTTTCCACATTGGGCACCCTTTTTCGTGAGGTATTCAGAATCATTCATCTAACTCAAGATGTGGCTTGCTAAAATGTCTCCTGGCACAATAAGGAAGTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGCCTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGTTTCTTGATGATCTGGAATACAAGTTTGTAAAAGAGATGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2801#0 GCACGAGGGAAGATCTGTTCTGCATCCGCCTGGGAAAACAAGTGCTGACCCTCTGCAG-A 59 consensus_2801#1 -----------------------------------------------TTTTTCAGTGGTG 13 ** * * consensus_2801#0 CATGAGTGACAAACCAGACATCAAAGAGGTCACAACCTTTGACAAGACCAAACTGA---A 116 consensus_2801#1 GGTAAAGTATGTATTCTTTAGCAATGAGAAGTTTGGGTTTTTTCAGCTGAAACTTGTATA 73 * * * * * *** *** *** ** ***** * consensus_2801#0 GAAGACTGATACTCAGGAGAAAAAC--ACATTGCCAACAAAAGAGACAATCGAACAGGAG 174 consensus_2801#1 TTATGCTGATGTACAGGAATAAACCTGAAAATCTCTTATGAATAAACAATCGAACAGGAG 133 * ***** ***** *** * * * * * ** * *************** consensus_2801#0 AAGTCTGGGTAATGCTCTGGAACGTGTGCTCCACTGCACACGCCTTTTCTTCATGTATTC 234 consensus_2801#1 AAGTCAGCCTCAAGGGGGGGCCCGGTTTCCACATTGGGCACCCTTTTTCGTGAGGTATTC 193 ***** * * * * ** ** * * ** ** *** * ***** * * ****** consensus_2801#0 AGAATCATTCATCTAACTCAAGATGTGGCTTGCTAAAATGTCCCCTGGCACAATAAGGAA 294 consensus_2801#1 AGAATCATTCATCTAACTCAAGATGTGGCTTGCTAAAATGTCTCCTGGCACAATAAGGAA 253 ****************************************** ***************** consensus_2801#0 GTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGC 354 consensus_2801#1 GTGACCTGTCAAAATGGTTCCTGTTCATCTGCTGCACTTCAGTTGAAGACCAGACATGGC 313 ************************************************************ consensus_2801#0 CTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGT 414 consensus_2801#1 CTCATCTGAGGGACCTACACTTTGAACAACGCCTGCCTTCTAGTTGCTTGTAAATTAAGT 373 ************************************************************ consensus_2801#0 TTCTTGATGATCTGGAATACAAGTTTGTAAAAAAGATGCTCAATAAAAATTTAAACTCGA 474 consensus_2801#1 TTCTTGATGATCTGGAATACAAGTTTGTAAAAGAGATGCTC------------------- 414 ******************************** ******** consensus_2801#0 AAAAAAAAAAAAAAAAAAAAAACCCGGGGGGGGCCCGGGACCCAAGTTTTGGGC 528 consensus_2801#1 ------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |