These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2813#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 357 fasta sequence [GCACGAGCGGCACGAGAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAAAAAAAAA----AAAAAAAGCCCGGGGGGGGGCCGGGAACCAAGTTTTGGCC] [+] EMBL CA330990 [GCACGAGCGGCACGAGAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACT ] [+] EMBL CA330513 [ caAAATGTCGTCCCACAAAACTTTCAGGATTTAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAAAAA ] [+] EMBL CA330963 [ CGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAGCAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACT ] [+] EMBL CA330377 [ CCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAAC ] [+] EMBL FR0055477 [ CACAAGACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGTCGCAGCACAGGCCCATTCCTCAGTGGCTCAGCATGACGACTGGCAACAAGATCAGGTACANCTCTACGAGGAGACACTGGAGGAGGACCAAGCTTGGNCTGTNACCGGGAGGGTCGCCACGTCACCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGCTATGCTCATGTTTGACATTAACAGATCTGTGATCAAACTTGAAATGGATATGCTCAAGAATGCCCTTGGGGGGACCGGGACCCAACTTTTGGCC] [+] EMBL CA330924 [ AAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACT ] [+] EMBL CA845781 [ ACTTTCAGGATCACCTGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTT ] [+] EMBL FR0056311 [ CTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTG AAAAAAAA AAAAAAACCCCGAGGGGGGGCCCGGTACCAAGTTTTGGTC] [+] EMBL FR0056266 [ TCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAGAG ] [+] EMBL CA844860 [ GGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGG ] [+] EMBL FR0058034 [ GATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAAAAAAAAA AAAA ] [+] EMBL FR0056025 [ ATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAAAAAAAAA AAAAAAAACCCCGGGGGGGG ] [+] EMBL CA844486 [ AAGCACCTTCAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAAAAAAAAA ] [+] EMBL CA333602 [ CAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGT ] consensusID : consensus_2813#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 334 fasta sequence [ACAAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA-AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT-CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAAAGAGAGAGGGA-ACAAAAAAGACCCAGGGGGGGGCCCGGGACCAAATTTTTGGC] [-] EMBL CA588853 [ACAAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACC ] [+] EMBL CA844958 [ TCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAA ] [+] EMBL FR0055480 [ ACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAACAGATCTGTGATCAAACTTGAAATGGATACAAAAAAGTCTCAGGGGGGGCCCCGTGACCAAATTTTTGAC] [+] EMBL CA844585 [ CAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAAAa ] [+] EMBL FR0056926 [ CTAAGAAGCAGACACAGAACAGGCCCATTCCTCAGTGGTTCAGTCTGGAGACTGGGAACATTGAGCAGGTACAACTCCAAGAGGAGACACTGGCGGAGGACCAGGCTTGGCCTGTAACCGGGAGGGTCGCCATGTCAGCATCCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGA ] [+] EMBL FR0057389 [ GCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAAAGAGAGAGGG AAAAAAAACCCCGGGGGGGGCCCGGGACCCAATTTTTGG ] [+] EMBL CA330272 [ AACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACA AGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAAc ] [+] EMBL CA846693 [ AAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCAT CTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAA ] consensusID : consensus_2813#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [AAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGCATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGATGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAATTGGAAAAGCTCATGTTTCAAAGGGGGGCCTGTGACCAAATTTTT] [+] EMBL FR0055530 [AAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCTAAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGCATGAAGACTGGCAACAAGATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGAGGGTCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAGCAGCAGATGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGATCAAACTTGAATTGGAAAAGCTCATGTTTCAAAGGGGGGCCTGTGACCAAATTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2813#0 GCACGAGCGGCACGAGAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCT 60 consensus_2813#1 -------------ACAAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCT 47 consensus_2813#2 ---------------AAAATGTCGTCCCACAAAACTTTCAGGATCAAGCGCTTCCTCGCT 45 ******************************************** consensus_2813#0 AAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAG 120 consensus_2813#1 AAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGAATGAAGACTGGCAACAAG 107 consensus_2813#2 AAGAAGCAGAAACAGAACAGGCCCATTCCTCAGTGGATCAGCATGAAGACTGGCAACAAG 105 ***************************************** ****************** consensus_2813#0 ATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGA 180 consensus_2813#1 ATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGA 167 consensus_2813#2 ATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGCTTGGCCTGTAACCGGGA 165 ************************************************************ consensus_2813#0 GGGTCCCCACGTCCCCCCATGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAG 240 consensus_2813#1 GGGTCCCCA----------TGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAG 217 consensus_2813#2 GGGTCCCCA----------TGTCAGCATCTGTCGGGACCTCCAGCTGCCTGGACTTGGAG 215 ********* ***************************************** consensus_2813#0 CAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGAT 300 consensus_2813#1 CAGCAGTTGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGAT 277 consensus_2813#2 CAGCAGATGTTTTGTACAGACATTGGTTATGCTCATGTTTGACATTAAAAGATCTGTGAT 275 ****** ***************************************************** consensus_2813#0 CAAACTTGAAAAAAAAAAAAAAAAGCC-CGGGGGGGGGCCGGGAACCAAGTTTTGGCC 357 consensus_2813#1 CAAAAGAGAGAGGGAACAAAAAAGACC-CAGGGGGGGGCCCGGGACCAAATTTTTGGC 334 consensus_2813#2 CAAACTTGAATTGGAAAAGCTCATGTTTCAAAGGGGGGCCTGTGACCAAATTTTT--- 330 **** ** ** * * * ******** * ***** **** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |