These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [ATTGAAGGACCACTTCAAAGGAACAATCAGGTAACGGGACAAAGAAAAGCATCTGTATTGCTTTCTATTTTATTTCTCTGCAACACTATTGACTGAACTTGCTCTGACAGGAAAGAAGATGTTCGTGCGACAGAGAAAGACAAGGTGTGTTTCAATCTTCTGAGCATTACTTCTGCAGCTCGCAGTTGTTTAACAAAGATTGGGGTTTTTTGTTGCAGGTGGAGATTTACTAAAGCTTCAGGCCTGGTGACATTGTCCTGGCAAAAGTTATGTCTCTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAGAATGAACTGGGGGTGGTGGTAGCACACAGTGAATCAGGTAAACGTCACCGCTCACTTCAACATTGTGAACACAAGGTGGCGACAAAGTAACACAGCAAAATCGATCCAGAAATGTGACCAATTAAGACTTTTTGTTCTCCAGGTGCAGTGATGGTTCCAATCAGTTGGAGTGAGATGCAGTGCCCACTGACTTATGCTAAAGAGTTACGTAAAGTTGCACGAGTGCAGG] [+] EMBL CA330703 [ATTGAAGGACCACTTCAAAGGAACAATCAGGTAACGGGACAAAGAAAAGCATCTGTATTGCTTTCTATTTTATTTCTCTGCAACACTATTGACTGAACTTGCTCTGACAGGAAAGAAGATGTTCGTGCGACAGAGAAAGACAAGGTGTGTTTCAATCTTCTGAGCATTACTTCTGCAGCTCGCAGTTGTTTAACAAAGATTGGGGTTTTTTGTTGCAGGTGGAGATTTACTAAAGCTTCAGGCCTGGTGACATTGTCCTGGCAAAAGTTATGTCTCTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAGAATGAACTGGGGGTGGTGGTAGCACACAGTGAATCAGGTAAACGTCACCGCTCACTTCAACATTGTGAACACAAGGTGGCGACAAAGTAACACAGCAAAATCGATCCAGAAATGTGACCAATTAAGACTTTTTGTTCTCCAGGTGCAGTGATGGTTCCAATCAGTTGGAGTGAGATGCAGTGCCCACTGACTTATGCTAAAGAGTTACGTAAAGTTGCACGAGTGCAGG] consensusID : consensus_326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [TCCTCACTAGCAGGCTATGTCGTTAGGAAAAGTGAGGGGAAAGAGCTACCCATGATCTCCGTGGTGAGAGGAACAGAATTACAACTGCTACCAGATGTGGGAGCAATAGTCACCTGTAAGGTGACCAGCATCAACCCAAGATTTGCCAAAGTCCACATCCTAAAGGTCGGGTCCACGTCATTGAAGGACCACTTCAAAGGAACAATCAGGAAAGAAGATGTTCGTGCGACAGAGAAAGACAAGGTGGAGATTTACAAAAGCTTCAGGCCTGGTGACATTGTCCTGCCAAAAGTTATGTCTCTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAAAATGAACTGGGGGGGGGGGG] [+] EMBL FR0060166 [TCCTCACTAGCAGGCTATGTCGTTAGGAAAAGTGAGGGGAAAGAGCTACCCATGATCTCCGTGGTGAGAGGAACAGAATTACAACTGCTACCAGATGTGGGAGCAATAGTCACCTGTAAGGTGACCAGCATCAACCCAAGATTTGCCAAAGTCCACATCCTAAAGGTCGGGTCCACGTCATTGAAGGACCACTTCAAAGGAACAATCAGGAAAGAAGATGTTCGTGCGACAGAGAAAGACAAGGTGGAGATTTACAAAAGCTTCAGGCCTGGTGACATTGTCCTGCCAAAAGTTATGTCTCTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAAAATGAACTGGGGGGGGGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_326#0 -----ATTGAAGGACCACTTCAA-AGGAACAATCAGGTAACGGGACAAAGAAAAGCATCT 54 consensus_326#1 TCCTCACTAGCAGGCTATGTCGTTAGGAAAAGTGAGGGGAAAGAGCTACCCATGATCTCC 60 * * * * * ** ***** * * *** * * * * * ** consensus_326#0 GTATTGCTTTCTATTTTATTTCT-CTGCAACACTATTGACTGAACTTGCTCTGACAGGAA 113 consensus_326#1 GTGGTGAGAGGAACAGAATTACAACTGC--TACCAGATGTGGGAGCAATAGTCACCTGTA 118 ** ** * *** * **** ** * * * * ** * * consensus_326#0 AGAAGATGTTCGTGCGACAGAGAAA-GACAAGGT--GTGTTTCAATCTTCTGAGCATTAC 170 consensus_326#1 AGGTGACCAGCATCAACCCAAGATTTGCCAAAGTCCACATCCTAAAGGTCGGGTCCACGT 178 ** ** * * * *** * *** ** * ** ** * * consensus_326#0 TTCTGCAGCTCG----CAGTTGTTTAACAAAGATTGGGGTTTTTTGTTGCA--------- 217 consensus_326#1 CATTGAAGGACCACTTCAAAGGAACAATCAGGAAAGAAGATGTTCGTGCGACAGAGAAAG 238 ** ** * ** * ** * ** * * * ** ** * consensus_326#0 ----GGTGGAGATTTACTAAAGCTTCAGGCCTGGTGACATTGTCCTGGCAAAAGTTATGT 273 consensus_326#1 ACAAGGTGGAGATTTACAAAAGCTTCAGGCCTGGTGACATTGTCCTGCCAAAAGTTATGT 298 ************* ***************************** ************ consensus_326#0 CTCTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAGAATGAACTGGGGGTGG 333 consensus_326#1 CTCTTGGCAATGTGGAGTCCAGCTACCTGTTGACAACAGCAGAAAATGAACTGGGGGGGG 358 ******************************************* ************* ** consensus_326#0 TGGTAGCACACAGTGAATCAGGTAAACGTCACCGCTCACTTCAACATTGTGAACACAAGG 393 consensus_326#1 GGGG-------------------------------------------------------- 362 ** consensus_326#0 TGGCGACAAAGTAACACAGCAAAATCGATCCAGAAATGTGACCAATTAAGACTTTTTGTT 453 consensus_326#1 ------------------------------------------------------------ consensus_326#0 CTCCAGGTGCAGTGATGGTTCCAATCAGTTGGAGTGAGATGCAGTGCCCACTGACTTATG 513 consensus_326#1 ------------------------------------------------------------ consensus_326#0 CTAAAGAGTTACGTAAAGTTGCACGAGTGCAGG 546 consensus_326#1 --------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |