These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [GAACAATCTCCATTCCAGCAAGATAACAGGTCTCTCGAAGTGCTTTGATTCTCTCATCGGATTCTATAACTTACTGACTCAAACATCGTTTCTTTCACCGAGGCTCACCCTCGAATACAAGACGAGCAACACTGAGGCGGACAAACGCATTGAAGGTTTTCCATTTGACATCAACATGTTCTGTCTGACAAACAACAAGAGCCTCTGAGGATCGGAGGAGGATTATCATTCCAACATTTCCTCCTCCTGTAATCGATGACGGGACCGAACTCACCTGGTCGGGCCGGGACCTCCCCGGCCAAGCTGAGCCGGTACGGCCGCTCCAAGAGCACCAGTGCTCACTGTCTCCTGCGCTGCAGCACCCAGGAGGAGCTGTGTGCATCCG] [+] EMBL FR0060320 [GAACAATCTCCATTCCAGCAAGATAACAGGTCTCTCGAAGTGCTTTGATTCTCTCATCGGATTCTATAACTTACTGACTCAAACATCGTTTCTTTCACCGAGGCTCACCCTCGAATACAAGACGAGCAACACTGAGGCGGACAAACGCATTGAAGGTTTTCCATTTGACATCAACATGTTCTGTCTGACAAACAACAAGAGCCTCTGAGGATCGGAGGAGGATTATCATTCCAACATTTCCTCCTCCTGTAATCGATGACGGGACCGAACTCACCTGGTCGGGCCGGGACCTCCCCGGCCAAGCTGAGCCGGTACGGCCGCTCCAAGAGCACCAGTGCTCACTGTCTCCTGCGCTGCAGCACCCAGGAGGAGCTGTGTGCATCCG] consensusID : consensus_374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [GTAGCTGACACCGAAGAGCTGCGCGCAATGCTGATGGGAAAGAATGCGCAGAGTAGGGTTTCCATTTGACATCAACATGTTCTGCCTGACAAACAACAAGAGCCTGTGAGGATCGGAGGAGGATTATCGGTCCAACATTTCCTCCTCCTGTAATCGATGACGAGACCGAACTCACCTGGGCGGGCCGGGACCTTCCCGGTCAAGCTGAGCCGGGACGCGCGCTCCAAGA] [+] EMBL FR0060887 [GTAGCTGACACCGAAGAGCTGCGCGCAATGCTGATGGGAAAGAATGCGCAGAGTAGGGTTTCCATTTGACATCAACATGTTCTGCCTGACAAACAACAAGAGCCTGTGAGGATCGGAGGAGGATTATCGGTCCAACATTTCCTCCTCCTGTAATCGATGACGAGACCGAACTCACCTGGGCGGGCCGGGACCTTCCCGGTCAAGCTGAGCCGGGACGCGCGCTCCAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_374#0 GAACAATCTCCATTCCAGCAAGATAACAGGTCTCTCGAAGTGCTTTGATTCTCTCATCGG 60 consensus_374#1 ------------------------------------------------------------ consensus_374#0 ATTCTATAACTTACTGACTCAAACATCGTTTCTTTCACCGAGGCTCACCCTCGAATACAA 120 consensus_374#1 ---------------------------------------GTAGCTGACACCGAAGAGCTG 21 * *** ** * * * consensus_374#0 GACGAGCAACACTGAGGCGGACAAACGCATTGA--AGGTTTTCCATTTGACATCAACATG 178 consensus_374#1 --CGCGCAATGCTGATGGGAAAGAATGCGCAGAGTAGGGTTTCCATTTGACATCAACATG 79 ** **** **** * * * ** ** ** *** ********************* consensus_374#0 TTCTGTCTGACAAACAACAAGAGCCTCTGAGGATCGGAGGAGGATTATCATTCCAACATT 238 consensus_374#1 TTCTGCCTGACAAACAACAAGAGCCTGTGAGGATCGGAGGAGGATTATCGGTCCAACATT 139 ***** ******************** ********************** ********* consensus_374#0 TCCTCCTCCTGTAATCGATGACGGGACCGAACTCACCTGGTCGGGCCGGGACCTCCCCGG 298 consensus_374#1 TCCTCCTCCTGTAATCGATGACGAGACCGAACTCACCTGGGCGGGCCGGGACCTTCCCGG 199 *********************** **************** ************* ***** consensus_374#0 CCAAGCTGAGCCGGTACGGCCGCTCCAAGAGCACCAGTGCTCACTGTCTCCTGCGCTGCA 358 consensus_374#1 TCAAGCTGAGCCGGGACGCGCGCTCCAAGA------------------------------ 229 ************* *** ********** consensus_374#0 GCACCCAGGAGGAGCTGTGTGCATCCG 385 consensus_374#1 --------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |