These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_399#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [GACTGGCAGAAGGAACTGGTCTGAAGATTCCTCCTGCTGCCCAGCAGGCTCTCCAGATGACTGGATCCATGTCCTTCCCAACCATCAGTGGTCCTCCAGCTGTCCCAACTCCATCTCCCAGCCAGGCTCTGAACCTGCCGGCTCAGCCGCTGGCCACACACTGCCTTCAGCTCTCCAACCTCTTCAACCCACAGGCAGAGAATGATCCCAGCTGGGCCGTCGAGATCCAAGACGACGTCATCGAGGAGTGCAACAAACATGGAGGCGTCGTTCACATTTACGTGGACAAGAACTCGACTCAAGGCAACGTGTACGTGAAGTGCCCCTCGATTCCGGCGGCGATGGCGACCGTCAACGCCCTTCATGGACGCTGGTTTGCAGGCAGAATGATCACGGCTGCGTATGTTCCCCTCCCGACCTANCACAACCTTTTCCCCGACTCTGTGACCGCGAAGCAGCTCCGGATGCCGTCACGCCGATAATGGGATGCAAC] [+] EMBL FR0055990 [GACTGGCAGAAGGAACTGGTCTGAAGATTCCTCCTGCTGCCCAGCAGGCTCTCCAGATGACTGGATCCATGTCCTTCCCAACCATCAGTGGTCCTCCAGCTGTCCCAACTCCATCTCCCAGCCAGGCTCTGAACCTGCCGGCTCAGCCGCTGGCCACACACTGCCTTCAGCTCTCCAACCTCTTCAACCCACAGGCAGAGAATGATCCCAGCTGGGCCGTCGAGATCCAAGACGACGTCATCGAGGAGTGCAACAAACATGGAGGCGTCGTTCACATTTACGTGGACAAGAACTCGACTCAAGGCAACGTGTACGTGAAGTGCCCCTCGATTCCGGCGGCGATGGCGACCGTCAACGCCCTTCATGGACGCTGGTTTGCAGGCAGAATGATCACGGCTGCGTATGTTCCCCTCCCGACCTANCACAACCTTTTCCCCGACTCTGTGACCGCGAAGCAGCTCCGGATGCCGTCACGCCGATAATGGGATGCAAC] consensusID : consensus_399#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [TGGATAAAGTTTATTGGGAGCCTCCATACAAAAAAAATGAACTTATGGCTGTAGAAAGTTACAAAGAATTATCGACAGTTTAACTGGCATATAAAGCCTATTTACCCCAGATTTTACTCATTGCAAGTTCACGTTAAATCTAAAACTGAAGAAGCGGATGAAACAGTAATATTTAAAACACAGATACCTGCAGATTACGTCTCAGTGGCGGTTTACAGCACAAACCCACAAATCTGAAAAGCAACTCAAAAGATTTACTTACAATGTGAACACTTGAACTTGAGGCAACCTTTATTACATACGACAAACTAATTTCGACGTGGCCCGGTGACGTTTTCGTGGATGCAAACAAATGTATTTACACGGCGTCCCCACGTGTTGCATCGCATTATCGGCGTGACGGCATCAGGAGCTGCTTCGCGGTCAC] [+] EMBL CA331450 [TGGATAAAGTTTATTGGGAGCCTCCATACAAAAAAAATGAACTTATGGCTGTAGAAAGTTACAAAGAATTATCGACAGTTTAACTGGCATATAAAGCCTATTTACCCCAGATTTTACTCATTGCAAGTTCACGTTAAATCTAAAACTGAAGAAGCGGATGAAACAGTAATATTTAAAACACAGATACCTGCAGATTACGTCTCAGTGGCGGTTTACAGCACAAACCCACAAATCTGAAAAGCAACTCAAAAGATTTACTTACAATGTGAACACTTGAACTTGAGGCAACCTTTATTACATACGACAAACTAATTTCGACGTGGCCCGGTGACGTTTTCGTGGATGCAAACAAATGTATTTACACGGCGTCCCCACGTGTTGCATCGCATTATCGGCGTGACGGCATCAGGAGCTGCTTCGCGGTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_399#0 GACTGGCAGAAGGAACTGGTCTGAAGATTCCTCCTGCTGCCCAGCAGGCTCTCCAGATGA 60 consensus_399#1 ------TGGATAAAGTTTATTGGGAGCCTCCATACA------AAAAAAATGAACTTATGG 48 ** * * * * ** *** * * * * *** consensus_399#0 CTGGATCCATGTCCTTCCCAACCATCAGTGGTCCTCCAGCTGTCCCAACTCCATCTCCCA 120 consensus_399#1 CTGTAGA-AAGTTACAAAGAATTATCGACAGTTTAACTGGCATATAAAGCCTATTTACC- 106 *** * * ** ** *** ** * * * ** * ** * ** consensus_399#0 GCCAGGCTCTGAACCTGCCGGCTCAGCCGCTGGCCACACACTGCCTTCAGCTCTCCAACC 180 consensus_399#1 -CCAGATTTTACTCATTGCAAGTTCACGTTAAATCTAAAACTGAAGAAGCGGATGAAACA 165 **** * * * * * * * * * **** * *** consensus_399#0 ----TCTTCAACCCACAGGCAGAGAATGATCCCAGCTGGGCCGTCGAGATCCAAGACGAC 236 consensus_399#1 GTAATATTTAAAACACAGATACCTGCAGATTACGTCTCAGT-GGCGGTTTACAGCACAAA 224 * ** ** ***** * *** * ** * * ** * ** ** * consensus_399#0 GTCATCGAGGAGTGCAACAAACATGGAGGCGTCGTTCACATTTACGTGGACAAGAACTCG 296 consensus_399#1 CCCACAAATCTGAAAAGCAA-CTCAAAAGATTTACTTACA---ATGTGAACA---CTTGA 277 ** * * * *** * * * * * *** * *** *** * consensus_399#0 ACTCAAGGCAACGTGTACGTGAAGTGCCCCTC-GATTCCGGCGGCGATGGCGACCGTCAA 355 consensus_399#1 ACTTGAGGCAACCTTTATTACATACGACAAACTAATTTCGACG----TGGC--CCGGTGA 331 *** ******* * ** * * * * *** ** ** **** *** * consensus_399#0 CGCCCTTCATGGACGCTGGTTTGCAGGCAGAATGATCACGGCTGCGTATGTTCCCCTCCC 415 consensus_399#1 CGTT-TTCGTGGA--------TGCAAACAAATGTATTTACACGGCGT-----CCCCACGT 377 ** *** **** **** ** * ** * **** **** * consensus_399#0 GACCTANCACAACCTTTTCCCCGACTCTGTGACCGCGAAGCAGCTCCGGATGCCGTCACG 475 consensus_399#1 GTTGCATCGCA---TTATCGGCGTGACGGCATCAG--GAGCTGCTTCG----CGGTCAC- 427 * * * ** ** ** ** * * * * *** *** ** * ***** consensus_399#0 CCGATAATGGGATGCAAC 493 consensus_399#1 ------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |