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Takifugu rubripes
cluster # 430 cluster # 430       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_430#0 length = 641 sequences # 1  
consensus_430#1 length = 601 sequences # 1  

consensusID : consensus_430#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence
                              [ACATCCATTGCAGCTTATGGTGCAACCCCACACATCAAGTCAGTATCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGATTTTCCCCCTTCCTCGTCCTCTCCCNNTTCCCTGGAAGTCTTCTTTTTACCTACCATCGGTCGTCGTAACCGTCTNCCCTCCTCGTCTTACTCCCATCCCTCCCTCCCCCACTAACCACCTTGCGCCCGGCCAGCTCCACAGATTCTCACATTCCTCCCCCCCCCCCTCCTTCCCTTTACCTTCCCTCCACCTCCCCCACTTTCCCCGCGGTCTCTACCCCCAGTTCCCCCGCCCCCCCGCGTCCTCGTGCCCATACCCCCCTAGTCCCCATTGGCCCTCTTTCCCCTGCCCTAATCATAGCCTTTCTGCCCCTCCCCTCTATTTAANACCCCTCGCACACAAAACTCCCCTCAACTCCCTCCCCCACCCCCCATATCACTCCCCCACCTCCCACCCACGCACGCGCCGCACAGCAC]

[+] EMBL CA331694             [ACATCCATTGCAGCTTATGGTGCAACCCCACACATCAAGTCAGTATCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGATTTTCCCCCTTCCTCGTCCTCTCCCNNTTCCCTGGAAGTCTTCTTTTTACCTACCATCGGTCGTCGTAACCGTCTNCCCTCCTCGTCTTACTCCCATCCCTCCCTCCCCCACTAACCACCTTGCGCCCGGCCAGCTCCACAGATTCTCACATTCCTCCCCCCCCCCCTCCTTCCCTTTACCTTCCCTCCACCTCCCCCACTTTCCCCGCGGTCTCTACCCCCAGTTCCCCCGCCCCCCCGCGTCCTCGTGCCCATACCCCCCTAGTCCCCATTGGCCCTCTTTCCCCTGCCCTAATCATAGCCTTTCTGCCCCTCCCCTCTATTTAANACCCCTCGCACACAAAACTCCCCTCAACTCCCTCCCCCACCCCCCATATCACTCCCCCACCTCCCACCCACGCACGCGCCGCACAGCAC]


>consensus_430#0 ACATCCATTGCAGCTTATGGTGCAACCCCACACATCAAGTCAGTATCCACTGTGACAGGT CAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAG CTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGG TGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGATTTTCCCCCTTCCTCG TCCTCTCCCNNTTCCCTGGAAGTCTTCTTTTTACCTACCATCGGTCGTCGTAACCGTCTN CCCTCCTCGTCTTACTCCCATCCCTCCCTCCCCCACTAACCACCTTGCGCCCGGCCAGCT CCACAGATTCTCACATTCCTCCCCCCCCCCCTCCTTCCCTTTACCTTCCCTCCACCTCCC CCACTTTCCCCGCGGTCTCTACCCCCAGTTCCCCCGCCCCCCCGCGTCCTCGTGCCCATA CCCCCCTAGTCCCCATTGGCCCTCTTTCCCCTGCCCTAATCATAGCCTTTCTGCCCCTCC CCTCTATTTAANACCCCTCGCACACAAAACTCCCCTCAACTCCCTCCCCCACCCCCCATA TCACTCCCCCACCTCCCACCCACGCACGCGCCGCACAGCAC



consensusID : consensus_430#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence
                              [TTTTTTTTTTCCATAACATCCATTGCAGCTTATGGTGTAACCCCACACATCAAGTCAGTATCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAGTCCCCCCCTTCCTCGTCCTCTCCCAGTTCCCTGGAAGTCGTCGTAAACGTAGTAGGGGTCGTCGTAACCGCCGCGGTAATTGTGGTAGTCGTATCCGAAGTAACTGTAATAATCTTCATAGCCGTAATAATCGGGAGGGTAGGGGTAGCCCCCGCGCGCTCCCCTGCCTCTGCCTCTCGAGGGTGGGGGCATGTGAGGGGGGCCGTAATAATAGTATTCATCATACATGGGTGTTTTAGCAGCTTGCCTCTGAGCTTTGCGCTCTTTCCTCTTCTGATCAGGAGGCTTGGCAAAAACTATTTCAATGTGCTCGCCCTCCAGGTCTTTGCCATTCAGATCAGCCAGAGCCTTCACTGCACCA]

[+] EMBL CA332048             [TTTTTTTTTTCCATAACATCCATTGCAGCTTATGGTGTAACCCCACACATCAAGTCAGTATCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAGTCCCCCCCTTCCTCGTCCTCTCCCAGTTCCCTGGAAGTCGTCGTAAACGTAGTAGGGGTCGTCGTAACCGCCGCGGTAATTGTGGTAGTCGTATCCGAAGTAACTGTAATAATCTTCATAGCCGTAATAATCGGGAGGGTAGGGGTAGCCCCCGCGCGCTCCCCTGCCTCTGCCTCTCGAGGGTGGGGGCATGTGAGGGGGGCCGTAATAATAGTATTCATCATACATGGGTGTTTTAGCAGCTTGCCTCTGAGCTTTGCGCTCTTTCCTCTTCTGATCAGGAGGCTTGGCAAAAACTATTTCAATGTGCTCGCCCTCCAGGTCTTTGCCATTCAGATCAGCCAGAGCCTTCACTGCACCA]


>consensus_430#1 TTTTTTTTTTCCATAACATCCATTGCAGCTTATGGTGTAACCCCACACATCAAGTCAGTA TCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAA GATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACC CAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAG TCCCCCCCTTCCTCGTCCTCTCCCAGTTCCCTGGAAGTCGTCGTAAACGTAGTAGGGGTC GTCGTAACCGCCGCGGTAATTGTGGTAGTCGTATCCGAAGTAACTGTAATAATCTTCATA GCCGTAATAATCGGGAGGGTAGGGGTAGCCCCCGCGCGCTCCCCTGCCTCTGCCTCTCGA GGGTGGGGGCATGTGAGGGGGGCCGTAATAATAGTATTCATCATACATGGGTGTTTTAGC AGCTTGCCTCTGAGCTTTGCGCTCTTTCCTCTTCTGATCAGGAGGCTTGGCAAAAACTAT TTCAATGTGCTCGCCCTCCAGGTCTTTGCCATTCAGATCAGCCAGAGCCTTCACTGCACC A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_430#0      ---------------ACATCCATTGCAGCTTATGGTGCAACCCCACACATCAAGTCAGTA 45
consensus_430#1      TTTTTTTTTTCCATAACATCCATTGCAGCTTATGGTGTAACCCCACACATCAAGTCAGTA 60
                                    ********************** **********************

consensus_430#0      TCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAA 105
consensus_430#1      TCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAA 120
                     ************************************************************

consensus_430#0      GATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACC 165
consensus_430#1      GATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACC 180
                     ************************************************************

consensus_430#0      CAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAT 225
consensus_430#1      CAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAG 240
                     *********************************************************** 

consensus_430#0      TTTCCCCCTTCCTCGTCCTCTCCCNNTTCCCTGGAAGTCTTCTTTTTACCTACCATCGGT 285
consensus_430#1      TCCCCCCCTTCCTCGTCCTCTCCCAGTTCCCTGGAAGTCGTCGTAA-ACGTAGTAGGGGT 299
                     *  *********************  ************* ** *   ** **  *  ***

consensus_430#0      CGTCGTAACCGTCTNCCCTCCTCGTCTTACTCCCATCCCTCCCTCCCCCACTAACCACCT 345
consensus_430#1      CGTCGTAACCG-CCGCGGTAATTGTGGTAGTCGTATCCGAAGTAACTGTAATAATCTTCA 358
                     *********** *  *  *  * **  ** **  ****       *   * *** *  * 

consensus_430#0      TGCGCCCGGCCAGCTCCACAGATTCTCACATTCCTCCCCCCCCCCCTCCTTCCCTTTACC 405
consensus_430#1      TAGCCGTAATAATCG----GGAGGGTAGGGGTAGCCCCCGCGCGCTCCCCTGCCTCTGCC 414
                     *   *      * *      **   *     *   **** * * *  ** * *** * **

consensus_430#0      TTCCCTCCACCTCCCCCACTTTCCCCGCGGTCTCTACCCCCAGT-TCCCCCGCCCCCCCG 464
consensus_430#1      T---CTCGAGGGTGGGGGCATGTGAGGGGGGCCGTAATAATAGTATTCATCATACATGGG 471
                     *   *** *         * *     * ** *  **     *** * *  *   *    *

consensus_430#0      CGTCCTCGTGCCCATACCCCCCTAGTCCCCATTGGCCCTCTTTCCCCTGCCCTAATCATA 524
consensus_430#1      TGTTTTAGCAGCT---TGCCTCTGAGC----TTTGCGCTCTTTCCTCT--TCTGATCAGG 522
                      **  * *   *      ** **   *    ** ** ******** **   ** ****  

consensus_430#0      GCCTTTCTGCCCCTCCCCTCTATTTAANACCCCTCGCACACAAAACTCCCCTCAACTCCC 584
consensus_430#1      AGGCTT-----GGCAAAAACTATTTCAATGTGCTCGCCCTCCAGGTCTTTGCCATTCAGA 577
                         **             ****** *     ***** * * *         **      

consensus_430#0      TCCCCCACCCCCCATATCACTCCCCCACCTCCCACCCACGCACGCGCCGCACAGCAC 641
consensus_430#1      TCAGCCAGAGCCT---TCACTGCACCA------------------------------ 601
                     **  ***   **    ***** * ***                              




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)