These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [ACATCCATTGCAGCTTATGGTGCAACCCCACACATCAAGTCAGTATCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGATTTTCCCCCTTCCTCGTCCTCTCCCNNTTCCCTGGAAGTCTTCTTTTTACCTACCATCGGTCGTCGTAACCGTCTNCCCTCCTCGTCTTACTCCCATCCCTCCCTCCCCCACTAACCACCTTGCGCCCGGCCAGCTCCACAGATTCTCACATTCCTCCCCCCCCCCCTCCTTCCCTTTACCTTCCCTCCACCTCCCCCACTTTCCCCGCGGTCTCTACCCCCAGTTCCCCCGCCCCCCCGCGTCCTCGTGCCCATACCCCCCTAGTCCCCATTGGCCCTCTTTCCCCTGCCCTAATCATAGCCTTTCTGCCCCTCCCCTCTATTTAANACCCCTCGCACACAAAACTCCCCTCAACTCCCTCCCCCACCCCCCATATCACTCCCCCACCTCCCACCCACGCACGCGCCGCACAGCAC] [+] EMBL CA331694 [ACATCCATTGCAGCTTATGGTGCAACCCCACACATCAAGTCAGTATCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGATTTTCCCCCTTCCTCGTCCTCTCCCNNTTCCCTGGAAGTCTTCTTTTTACCTACCATCGGTCGTCGTAACCGTCTNCCCTCCTCGTCTTACTCCCATCCCTCCCTCCCCCACTAACCACCTTGCGCCCGGCCAGCTCCACAGATTCTCACATTCCTCCCCCCCCCCCTCCTTCCCTTTACCTTCCCTCCACCTCCCCCACTTTCCCCGCGGTCTCTACCCCCAGTTCCCCCGCCCCCCCGCGTCCTCGTGCCCATACCCCCCTAGTCCCCATTGGCCCTCTTTCCCCTGCCCTAATCATAGCCTTTCTGCCCCTCCCCTCTATTTAANACCCCTCGCACACAAAACTCCCCTCAACTCCCTCCCCCACCCCCCATATCACTCCCCCACCTCCCACCCACGCACGCGCCGCACAGCAC] consensusID : consensus_430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [TTTTTTTTTTCCATAACATCCATTGCAGCTTATGGTGTAACCCCACACATCAAGTCAGTATCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAGTCCCCCCCTTCCTCGTCCTCTCCCAGTTCCCTGGAAGTCGTCGTAAACGTAGTAGGGGTCGTCGTAACCGCCGCGGTAATTGTGGTAGTCGTATCCGAAGTAACTGTAATAATCTTCATAGCCGTAATAATCGGGAGGGTAGGGGTAGCCCCCGCGCGCTCCCCTGCCTCTGCCTCTCGAGGGTGGGGGCATGTGAGGGGGGCCGTAATAATAGTATTCATCATACATGGGTGTTTTAGCAGCTTGCCTCTGAGCTTTGCGCTCTTTCCTCTTCTGATCAGGAGGCTTGGCAAAAACTATTTCAATGTGCTCGCCCTCCAGGTCTTTGCCATTCAGATCAGCCAGAGCCTTCACTGCACCA] [+] EMBL CA332048 [TTTTTTTTTTCCATAACATCCATTGCAGCTTATGGTGTAACCCCACACATCAAGTCAGTATCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAAGATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACCCAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAGTCCCCCCCTTCCTCGTCCTCTCCCAGTTCCCTGGAAGTCGTCGTAAACGTAGTAGGGGTCGTCGTAACCGCCGCGGTAATTGTGGTAGTCGTATCCGAAGTAACTGTAATAATCTTCATAGCCGTAATAATCGGGAGGGTAGGGGTAGCCCCCGCGCGCTCCCCTGCCTCTGCCTCTCGAGGGTGGGGGCATGTGAGGGGGGCCGTAATAATAGTATTCATCATACATGGGTGTTTTAGCAGCTTGCCTCTGAGCTTTGCGCTCTTTCCTCTTCTGATCAGGAGGCTTGGCAAAAACTATTTCAATGTGCTCGCCCTCCAGGTCTTTGCCATTCAGATCAGCCAGAGCCTTCACTGCACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_430#0 ---------------ACATCCATTGCAGCTTATGGTGCAACCCCACACATCAAGTCAGTA 45 consensus_430#1 TTTTTTTTTTCCATAACATCCATTGCAGCTTATGGTGTAACCCCACACATCAAGTCAGTA 60 ********************** ********************** consensus_430#0 TCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAA 105 consensus_430#1 TCCACTGTGACAGGTCAGGACCGCCCTCGACCCCGCTTCCCTGCTGCCAAGGAGAGCAAA 120 ************************************************************ consensus_430#0 GATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACC 165 consensus_430#1 GATTGATTAGAAAAGCTGTCCACCTCTGCTGCTCGTTCCAGGGCCTCGCTGGGAGAAACC 180 ************************************************************ consensus_430#0 CAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAT 225 consensus_430#1 CAATCGGCCCCTGGGTGGTGCGGCGCCTCGGCCCTTGTTTTGACTGGCGGCGCCGCGGAG 240 *********************************************************** consensus_430#0 TTTCCCCCTTCCTCGTCCTCTCCCNNTTCCCTGGAAGTCTTCTTTTTACCTACCATCGGT 285 consensus_430#1 TCCCCCCCTTCCTCGTCCTCTCCCAGTTCCCTGGAAGTCGTCGTAA-ACGTAGTAGGGGT 299 * ********************* ************* ** * ** ** * *** consensus_430#0 CGTCGTAACCGTCTNCCCTCCTCGTCTTACTCCCATCCCTCCCTCCCCCACTAACCACCT 345 consensus_430#1 CGTCGTAACCG-CCGCGGTAATTGTGGTAGTCGTATCCGAAGTAACTGTAATAATCTTCA 358 *********** * * * * ** ** ** **** * * *** * * consensus_430#0 TGCGCCCGGCCAGCTCCACAGATTCTCACATTCCTCCCCCCCCCCCTCCTTCCCTTTACC 405 consensus_430#1 TAGCCGTAATAATCG----GGAGGGTAGGGGTAGCCCCCGCGCGCTCCCCTGCCTCTGCC 414 * * * * ** * * **** * * * ** * *** * ** consensus_430#0 TTCCCTCCACCTCCCCCACTTTCCCCGCGGTCTCTACCCCCAGT-TCCCCCGCCCCCCCG 464 consensus_430#1 T---CTCGAGGGTGGGGGCATGTGAGGGGGGCCGTAATAATAGTATTCATCATACATGGG 471 * *** * * * * ** * ** *** * * * * * consensus_430#0 CGTCCTCGTGCCCATACCCCCCTAGTCCCCATTGGCCCTCTTTCCCCTGCCCTAATCATA 524 consensus_430#1 TGTTTTAGCAGCT---TGCCTCTGAGC----TTTGCGCTCTTTCCTCT--TCTGATCAGG 522 ** * * * ** ** * ** ** ******** ** ** **** consensus_430#0 GCCTTTCTGCCCCTCCCCTCTATTTAANACCCCTCGCACACAAAACTCCCCTCAACTCCC 584 consensus_430#1 AGGCTT-----GGCAAAAACTATTTCAATGTGCTCGCCCTCCAGGTCTTTGCCATTCAGA 577 ** ****** * ***** * * * ** consensus_430#0 TCCCCCACCCCCCATATCACTCCCCCACCTCCCACCCACGCACGCGCCGCACAGCAC 641 consensus_430#1 TCAGCCAGAGCCT---TCACTGCACCA------------------------------ 601 ** *** ** ***** * *** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |