These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_44#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [ATACTGGACAGGTTTGTTCATAAATAGAAATACTGTAAAAACAAACTTCCAAGTCTATGACCCGGAGAACGCGGGTTCTTTTAAGTTTGTTTACATTGCAGTGAACCTCCCGCCCTATTTCCTATTTTTTTGTCTTTGAAAGCTGCACACTAAAAACTTTGAATGTATTGCCTTGTCCTGCTCACTTCAGATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGTGGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGGTACACCAGGGCTGCCAGGAGGTGAAACAGCGCCCCTGCTGGTGCGGATATCCGCTGCGCCCGGACCCCGGATATGAGCCATTTCAAACATGTTCCTTGCTGCCTTCCAGATTATCACAGACTTTGACATGACCTTAAGCAAGTTCGCTGTCAATGGAAAGCGTTGTCCAACGTGTCACAGCGAGTATGACATGCTTTCCCCAGAATTATTTCTTTTTTTTATTGCCTTAGTGAGATTTCTAGCTGTCAGGACGCTGAACTGCTGTTTGTGGAAGGTGATGCCATCCCGTTTTACACAGATATCATTGATAATTGCAAGCTGGTGACAGAGGAGTGCAGA] [+] EMBL BU808316 [ATACTGGACAGGTTTGTTCATAAATAGAAATACTGTAAAAACAAACTTCCAAGTCTATGACCCGGAGAACGCGGGTTCTTTTAAGTTTGTTTACATTGCAGTGAACCTCCCGCCCTATTTCCTATTTTTTTGTCTTTGAAAGCTGCACACTAAAAACTTTGAATGTATTGCCTTGTCCTGCTCACTTCAGATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGTGGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGGTACACCAGGGCTGCCAGGAGGTGAAACAGCGCCCCTGCTGGTGCGGATATCCGCTGCGCCCGGACCCCGGATATGAGCCATTTCAAACATGTTCCTTGCTGCCTTCCAGATTATCACAGACTTTGACATGACCTTAAGCAAGTTCGCTGTCAATGGAAAGCGTTGTCCAACGTGTCACAGCGAGTATGACATGCTTTCCCCAGAATTATTTCTTTTTTTTATTGCCTTAGTGAGATTTCTAGCTGTCAGGACGCTGAACTGCTGTTTGTGGAAGGTGATGCCATCCCGTTTTACACAGATATCATTGATAATTGCAAGCTGGTGACAGAGGAGTGCAGA] consensusID : consensus_44#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [CCAGTATATCGTGGCCAAGAAGAAACGAGCTGGAAAGAAAACCAGGATTATACAGATGATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGTGGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGATTATCACAGACTTTGACATGACCTTATGCAAGTTCGCTGTCAATGGAAAGCGTTGTCCAACGTGTCACAATATCATTGATAATTGCAAGCTGGTGACAGAGGAGTGCAGACAGAAGCTGCTGCAGCTGAAAAACAAGTATTATCCCATCGAGATCGACCCTCACCTCACCATGGAGGAGAAGTACCCCTTCATGGTCGAGTGGTATTATAATTCCCACACGCTACTGGTGGAGCAGCGACTAGAAAAGGACAAACTAGCAGAGGTGGTGAGAGAATCCGATGCTGCCCTCAGGGACGGGTACGAGAAGTCTTTCGACCGCTTGCAG] [+] EMBL CA590851 [CCAGTATATCGTGGCCAAGAAGAAACGAGCTGGAAAGAAAACCAGGATTATACAGATGATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGTGGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGATTATCACAGACTTTGACATGACCTTATGCAAGTTCGCTGTCAATGGAAAGCGTTGTCCAACGTGTCACAATATCATTGATAATTGCAAGCTGGTGACAGAGGAGTGCAGACAGAAGCTGCTGCAGCTGAAAAACAAGTATTATCCCATCGAGATCGACCCTCACCTCACCATGGAGGAGAAGTACCCCTTCATGGTCGAGTGGTATTATAATTCCCACACGCTACTGGTGGAGCAGCGACTAGAAAAGGACAAACTAGCAGAGGTGGTGAGAGAATCCGATGCTGCCCTCAGGGACGGGTACGAGAAGTCTTTCGACCGCTTGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_44#0 ATACTGGACAGGTTTGTTCATAAATAGAAATACTGTAAAAACAAACTTCCAAGTCTATGA 60 consensus_44#1 ------------------------------------------------------------ consensus_44#0 CCCGGAGAACGCGGGTTCTTTTAAGTTTGTTTACATTGCAGTGAACCTCCCGCCCTATTT 120 consensus_44#1 ------------------------------------------------------------ consensus_44#0 CCTATTTTTTTGTCTTTGAAAGCTGCACACTAAAAACTTTGAATGTATTGCCTTGTCCTG 180 consensus_44#1 --------CCAGTATATCGTGGCCAAGAAGAAACGAGCTGGAAAGAAAACCAGGATTATA 52 ** * * ** * ** * * *** * * * * * consensus_44#0 CTCACTTCAGATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGT 240 consensus_44#1 CAGAT----GATGCCTCAGTTCGAGAAGACGACGGTCCACATGAGGGACCCCGAGCGGGT 108 * * *************************************************** consensus_44#0 GGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGGTA--CACCAG 298 consensus_44#1 GGAGCAGATCATCTGTGATCTCATCAAAGGAGGAGCCTCCAAACTGCAGATTATCACAGA 168 ************************************************* * *** consensus_44#0 GGCTGCCAGGAGGTGAAACAGCGCCCCTGCTGGTGCGGATATCCGCTGCGCCCGGACCCC 358 consensus_44#1 CTTTGACATGACCTTATGCAAGTTCGCTGTCAATGGAAAG---CGTTGTCCAACGTGTCA 225 ** ** ** * * ** * *** ** * ** ** * * * consensus_44#0 GGATATGAGCCATTTCAAACATGTTCCTTGCTGCCTTCCAGATTATCACAGACTTTGACA 418 consensus_44#1 CAATATCA-----TTGATAATTGCAAGCTGGTGACAGAGGAGTGCAGACAGAAGCTGCTG 280 **** * ** * * ** ** ** * * ***** ** consensus_44#0 TGACCTTAAGCAAGTTCGCTGTCAATGGAAAGCGTTGTCCAACGTGTCACAGCGAGTATG 478 consensus_44#1 CAGCTGAAAAACAAGTATTATCCCATCGAGATCGACCCTCACCTCACCATGGAGGAGAAG 340 * ** * * * ** ** * ** ** * ** * * * * consensus_44#0 -ACATGCTTTCCCCAGAATTATTTCTTTTTTTTATTGCCTTAGTGAGATTTCTAGCTGTC 537 consensus_44#1 TACCCCTTCATGGTCGAGTGGTATTATAATTCCCACACGCTACTGGTGGAGC-AGCGACT 399 ** * ** * * * * ** * ** ** * *** consensus_44#0 AGGACGCTGAACTGCTGTTTGTGGAAGGTGATGCCATCCCGTTTTACACAGATATCATTG 597 consensus_44#1 AGAAAA--GGACAAACTAGCAGAGGTGGTGAGAGAATCCGATGCTGCCC-----TCAGGG 452 ** * * ** * ***** **** * * * * *** * consensus_44#0 ATAATTGCAAGCTGGTGACAGAG-GAGTGCAGA 629 consensus_44#1 ACGGGTACGAGAAGTCTTTCGACCGCTTGCAG- 484 * * * ** * ** * ***** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |