These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 753 fasta sequence [CATTCGCTAAGATGAGCCAATTGAAGTGAGTTGTCTGGACCTGTATCCCTTTAAGAGATCCAAGAAACCAGACGCTAGGAGGTTTGGCACGTCCGCTGAATCTTCACACATGAATCTGGTGCCTGTGAAAGGAGCAAAGTCAGCTTCACGGCCATCAACAAGATCTTCGCCAGCCTCTCTTGAGGAAGCAAAAAGGGAAATTGACAAATGTTTAGAAGAGATTTGGCTTCTTCCTGAAGGGGAACGGAACAAAGCCTTTAAGCGCTTGTACCTGAGGTGGCACCCGGACAAAAACATCAACTGCCACAATCTCGCCACTGAAGCCTTCAAATACTTGAAAAACCGAATTGATGATCTGCTCAACGGCAGAGCTCAAAACGCAGGCTCGGCCCATCGAGGGACAAATCAAGATTTTAGAAATTTCTACGGCAGTTGGAATCAGGAGGCCAATTATCACAGGCGGGGCTGGGAGAGATTCTACGGAGCTCACCGCCATTACAACTTTTGGGCCTTTAATCGAAATGTTCCACAGCCCAACAGAAAGGAGGCCCAGCGGTGGTGTCGGCAGGCTCGCTGCGATCTCCAGGCAGCACGCAAAGATGTGGACGGAAGCAGTACAGAATGGTGCCTGTTCAAAGTCCATCAGGCGGTGGAGAAGTCGCTCATAGCCGCAGTGTATAAAAGACAAGGTCAGCATCCCAACAGCTCCATTACAGACATGGCCACGCAAGTGTCCCACTACAGCGACCTGCT] [+] EMBL CA845968 [CATTCGCTAAGATGAGCCAATTGAAGTGAGTTGTCTGGACCTGTATCCCTTTAAGAGATCCAAGAAACCAGACGCTAGGAGGTTTGGCACGTCCGCTGAATCTTCACACATGAATCTGGTGCCTGTGAAAGGAGCAAAGTCAGCTTCACGGCCATCAACAAGATCTTCGCCAGCCTCTCTTGAGGAAGCAAAAAGGGAAATTGACAAATGTTTAGAAGAGATTTGGCTTCTTCCTGAAGGGGAACGGAACAAAGCCTTTAAGCGCTTGTACCTGAGGTGGCACCCGGACAAAAACATCAACTGCCACAATCTCGCCACTGAAGCCTTCAAATACTTGAAAAACCGAATTGATGATCTGCTCAACGGCAGAGCTCAAAACGCAGGCTCGGCCCATCGAGGGACAAATCAAGATTTTAGAAATTTCTACGGCAGTTGGAATCAGGAGGCCAATTATCACAGGCGGGGCTGGGAGAGATTCTACGGAGCTCACCGCCATTACAACTTTTGGGCCTTTAATCGAAATGTTCCACAGCCCAACAGAAAGGAGGCCCAGCGGTGGTGTCGGCAGGCTCGCTGCGATCTCCAGGCAGCACGCAAAGATGTGGACGGAAGCAGTACAGAATGGTGCCTGTTCAAAGTCCATCAGGCGGTGGAGAAGTCGCTCATAGCCGCAGTGTATAAAAGACAAGGTCAGCATCCCAACAGCTCCATTACAGACATGGCCACGCAAGTGTCCCACTACAGCGACCTGCT] consensusID : consensus_453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [GACAATGACTGCCTTTATTTTAAAGTTGTAGAATGATAATACAAGTAAACTTGATCCACATTGGAATTGTATTAGTTCATCATAGAGGTTTGGTTAATGGTGTCATCAAAGACTAAATATGAACAGTGAGTAAGCAGTTAACAATTGATAGGAAGAAAAAACTTGACTGAATTTAAAATAAAAAAGGTGTACACACATTGATTATGGATCTTTAGCCAGTGATCGATGTCAACATTAACGGTCGTCAATAATAATACTGTTGGTTCTCAGTGATAAATGTAGCCAACGACTTGCAAAACTGATATTGATAAAATGTTTAGTCCCAACGAACAGCATCGAACTGGTTAAACACGTTTGTCTCTAATTCACGTAGGACTCTATTACTCTGAGAAGCTGGGACGCTTGGTCCAGGGCCTGTCGTCCATTCTCTGCGCTGAACTGTTCGTTTGGAATGTTTGGAAACGGGTGGAAGTTGGGATACTGGGTCTTTTTGCCGTCCACCCCCAATCGCTTCAGGGTCTCCACAATCTGCGGCACGCCCCTCAGCAGGTCGCTGTAGTGGGACACTTGCGTGGCCATGTC] [+] EMBL CA331934 [GACAATGACTGCCTTTATTTTAAAGTTGTAGAATGATAATACAAGTAAACTTGATCCACATTGGAATTGTATTAGTTCATCATAGAGGTTTGGTTAATGGTGTCATCAAAGACTAAATATGAACAGTGAGTAAGCAGTTAACAATTGATAGGAAGAAAAAACTTGACTGAATTTAAAATAAAAAAGGTGTACACACATTGATTATGGATCTTTAGCCAGTGATCGATGTCAACATTAACGGTCGTCAATAATAATACTGTTGGTTCTCAGTGATAAATGTAGCCAACGACTTGCAAAACTGATATTGATAAAATGTTTAGTCCCAACGAACAGCATCGAACTGGTTAAACACGTTTGTCTCTAATTCACGTAGGACTCTATTACTCTGAGAAGCTGGGACGCTTGGTCCAGGGCCTGTCGTCCATTCTCTGCGCTGAACTGTTCGTTTGGAATGTTTGGAAACGGGTGGAAGTTGGGATACTGGGTCTTTTTGCCGTCCACCCCCAATCGCTTCAGGGTCTCCACAATCTGCGGCACGCCCCTCAGCAGGTCGCTGTAGTGGGACACTTGCGTGGCCATGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_453#0 CATTCGCTAAGATGAGCCAATTGAAGTGAGTTGTCTGGACCTGTATCCCTTTAAGAGATC 60 consensus_453#1 --------------------------------GACAATGACTGCCTTTATTTTAAAGTTG 28 * * *** * *** * ** * consensus_453#0 CAAGAAACCAGACGCTAGGAGGTTTGGCACGTCCGCTGAATCTTCACACATGAATCTGGT 120 consensus_453#1 TAGAATGATA-ATACAAGTAAACTTGATCCA--CATTGGAATTGTATTAGTTCATC---- 81 * * * * * ** * *** * * ** * * * * *** consensus_453#0 GCCTGTGAAAGGAGCAAAGTCAGCTTCACGGCCATCAACAAGATCTTCGCCAGCCTCTCT 180 consensus_453#1 -------ATAGAGGTTTGGTTAATGGTGTCATCAAAGACTAAATATGAACAG-------- 126 * ** * ** * ** ** * ** * * consensus_453#0 TGAGGAAGCAAAAAGGGAAATTGACAAATGTTTAGAAGAGATTTGGCTTCTTCCTGAAGG 240 consensus_453#1 TGAGTAAGCAGTTAAC--AATTGATAGGA----AGAAAAAACTTGACTGAATTTAAAATA 180 **** ***** * ****** * **** * * *** ** * ** consensus_453#0 GGAACGGAACAAAGCCTTTAAGCGCTTGTACCTGAGGTGGCACCCGGACAAAAACATCAA 300 consensus_453#1 AAAAAGGTGTACACACATTGATTA-TGGATCTTTAGCCAGTGATCG-ATGTCAACATTAA 238 ** ** * * * ** * * * * * ** * ** * ***** ** consensus_453#0 CTGCCA-CAATCTCGCCACTGAAGCCTTCAAATACTTGAAAAACCGAATTGATGATCTGC 359 consensus_453#1 CGGTCGTCAATAATAATACTGTTGGTTCTCAGT----GATAAATGTAGCCAACGACTTGC 294 * * * **** **** * * * * ** *** * * ** *** consensus_453#0 TCAACGGCAGAGCTCAAAACGCAGGCTCGGCCCATCGAGGGACAAATCAAGATT-TTAGA 418 consensus_453#1 AAAACTGATATTGATAAAATGT---TTAGTCCCAACGAACAGCA--TCGAACTGGTTAAA 349 *** * **** * * * **** *** ** ** * * *** * consensus_453#0 AATTTCTACGGCAGTTGGAATCAGGAGGCCAATTATCACAGGCGGGGCTGGGAGAGATTC 478 consensus_453#1 CACGTTTGTCTCTAATTCACGTAGGACTCTATTACTCTGA---GAAGCTGGGACGCTTGG 406 * * * * * * **** * * * ** * * ******* * consensus_453#0 TACGGAGCTCACCG-CCATTACAACTTTTGGGCC-TTTAATCGAAATGTTCCACAGCCCA 536 consensus_453#1 TCCAGGGCCTGTCGTCCATTCTCTGCGCTGAACTGTTCGTTTGGAATGTTTGGAAA--CG 464 * * * ** ** ***** ** * ** * * ****** * * consensus_453#0 ACAGAAAGGAGGCCCAGCGGTGGTGTCGGCAGGCTCGCTGCGATCTCCAGGCAGCACGCA 596 consensus_453#1 GGTGGAAGTTGGGATACTGGGTCTTTTTGCCGTCCACCCCCAATCGCTTCAGGGT-CTCC 523 * *** ** * ** * * ** * * * * *** * * * * consensus_453#0 AAGATGTGGACGGAAGCAGTACAGAATGGTGCCTGTTCAAAGTCCATCAGGCGGTGGAGA 656 consensus_453#1 ACAATCTGCG-GCACGCCCCTCAGCA-GGTCGCTGTAGTGGGACACTTGCGTGGCCATGT 581 * ** ** * * ** *** * *** **** * * * * ** * consensus_453#0 AGTCGCTCATAGCCGCAGTGTATAAAAGACAAGGTCAGCATCCCAACAGCTCCATTACAG 716 consensus_453#1 C----------------------------------------------------------- 582 consensus_453#0 ACATGGCCACGCAAGTGTCCCACTACAGCGACCTGCT 753 consensus_453#1 ------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |