These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [TCTGGGCCACAAGAGAGATCCCCCACTCTCACAACAGTGCACTTTAAGGAAAGTAGGGATATATATTTCTAAATTTGAATACAAAGATGTCTTTTTCCTGCGACCAGTCCTTGGACGGCAGTTTTCCTCCGTCTCCAACGGAGGACCGGCGCTCCAACCGGCTGTCCTGGGGCAGCCTGCTGCAGAGGCTGACCGAGCTGAAGGGGAACAATCAGAGAGCCACAGCTGATCATCTGAGCAGGAACAGCAGCCAAACTGGGTCTTTTGCAGACATGTCTCTGTCGGAGTTAGACAACAGTTTCCTGTGTTATCCGCTGGAGGAGACCCTGGCAGCAGAGGTTGCACAGCACATAACTCTGAGTCTTCAGGAGGCCTCCTCCAGCCTGGGCTGCACCAAGCTCATCTTATCCGATCTTCTGCTCCGCAACATCAGCCAAGAGCTGCTCCATCTGGCCTCCAATGAGCCCTGTGGTCTCAGGGGGGCGCTGATCGACCTCTGTGTGGACAGGGTGGACCTGGGCTGCCTCTATGCTGTGGACCAAATAGCAGTGGACCCCACGCTGGTCCCAACTTTTCAGGTGACCCTGGTACTGAGGCTAGATGCC] [+] EMBL CA333670 [TCTGGGCCACAAGAGAGATCCCCCACTCTCACAACAGTGCACTTTAAGGAAAGTAGGGATATATATTTCTAAATTTGAATACAAAGATGTCTTTTTCCTGCGACCAGTCCTTGGACGGCAGTTTTCCTCCGTCTCCAACGGAGGACCGGCGCTCCAACCGGCTGTCCTGGGGCAGCCTGCTGCAGAGGCTGACCGAGCTGAAGGGGAACAATCAGAGAGCCACAGCTGATCATCTGAGCAGGAACAGCAGCCAAACTGGGTCTTTTGCAGACATGTCTCTGTCGGAGTTAGACAACAGTTTCCTGTGTTATCCGCTGGAGGAGACCCTGGCAGCAGAGGTTGCACAGCACATAACTCTGAGTCTTCAGGAGGCCTCCTCCAGCCTGGGCTGCACCAAGCTCATCTTATCCGATCTTCTGCTCCGCAACATCAGCCAAGAGCTGCTCCATCTGGCCTCCAATGAGCCCTGTGGTCTCAGGGGGGCGCTGATCGACCTCTGTGTGGACAGGGTGGACCTGGGCTGCCTCTATGCTGTGGACCAAATAGCAGTGGACCCCACGCTGGTCCCAACTTTTCAGGTGACCCTGGTACTGAGGCTAGATGCC] consensusID : consensus_503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [GTTCCATAACTTTATTAAATGTAGATGAAAATATTCACGGCTGGAAGGGGGAGGCAGTCGTCAGTGAGGAGGGGGGGCGACCTTTCCACCATCAAAGAATCCCAAAAGTTGCCAGGCAGGATAGTACGCTGAGAACGTGCGCTAAAGTCTCATTGGCTGATAATTCCAGTGGGCGGGGCCTCCCGACTCGGGTATTTAATGCTTTGTTCCATTGTTTCCAGTGTTTTCCAGCTGGTCTGGGCCACAAGAGAGATCCCCCACTCTCACAACAGTGCACTTTAAGGAAAGTAGGGATATATATTTCTAAATTTGAATACAAAGATGTCTTTTTCCTGCGACCAGTCCTTGGACGGCAGTTTTCCTCCGTCTCCAACGGAGGACCGGCGCTCCAACCGGCTGTCCTGGGGCAGCCTGCTGCAGAGGCTGACCGAGCTGAAGGGGAACAATCAGAGAGCCACAGCTGATCATCTGAGCAGGAACAGCAGCCAAACTGGTGAGTCTTTATTCGACTAAAACTACACTTCAATAC] [+] EMBL CA332475 [GTTCCATAACTTTATTAAATGTAGATGAAAATATTCACGGCTGGAAGGGGGAGGCAGTCGTCAGTGAGGAGGGGGGGCGACCTTTCCACCATCAAAGAATCCCAAAAGTTGCCAGGCAGGATAGTACGCTGAGAACGTGCGCTAAAGTCTCATTGGCTGATAATTCCAGTGGGCGGGGCCTCCCGACTCGGGTATTTAATGCTTTGTTCCATTGTTTCCAGTGTTTTCCAGCTGGTCTGGGCCACAAGAGAGATCCCCCACTCTCACAACAGTGCACTTTAAGGAAAGTAGGGATATATATTTCTAAATTTGAATACAAAGATGTCTTTTTCCTGCGACCAGTCCTTGGACGGCAGTTTTCCTCCGTCTCCAACGGAGGACCGGCGCTCCAACCGGCTGTCCTGGGGCAGCCTGCTGCAGAGGCTGACCGAGCTGAAGGGGAACAATCAGAGAGCCACAGCTGATCATCTGAGCAGGAACAGCAGCCAAACTGGTGAGTCTTTATTCGACTAAAACTACACTTCAATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_503#0 ------------------------------------------------------------ consensus_503#1 GTTCCATAACTTTATTAAATGTAGATGAAAATATTCACGGCTGGAAGGGGGAGGCAGTCG 60 consensus_503#0 ------------------------------------------------------------ consensus_503#1 TCAGTGAGGAGGGGGGGCGACCTTTCCACCATCAAAGAATCCCAAAAGTTGCCAGGCAGG 120 consensus_503#0 ------------------------------------------------------------ consensus_503#1 ATAGTACGCTGAGAACGTGCGCTAAAGTCTCATTGGCTGATAATTCCAGTGGGCGGGGCC 180 consensus_503#0 -------------------------------------------------------TCTGG 5 consensus_503#1 TCCCGACTCGGGTATTTAATGCTTTGTTCCATTGTTTCCAGTGTTTTCCAGCTGGTCTGG 240 ***** consensus_503#0 GCCACAAGAGAGATCCCCCACTCTCACAACAGTGCACTTTAAGGAAAGTAGGGATATATA 65 consensus_503#1 GCCACAAGAGAGATCCCCCACTCTCACAACAGTGCACTTTAAGGAAAGTAGGGATATATA 300 ************************************************************ consensus_503#0 TTTCTAAATTTGAATACAAAGATGTCTTTTTCCTGCGACCAGTCCTTGGACGGCAGTTTT 125 consensus_503#1 TTTCTAAATTTGAATACAAAGATGTCTTTTTCCTGCGACCAGTCCTTGGACGGCAGTTTT 360 ************************************************************ consensus_503#0 CCTCCGTCTCCAACGGAGGACCGGCGCTCCAACCGGCTGTCCTGGGGCAGCCTGCTGCAG 185 consensus_503#1 CCTCCGTCTCCAACGGAGGACCGGCGCTCCAACCGGCTGTCCTGGGGCAGCCTGCTGCAG 420 ************************************************************ consensus_503#0 AGGCTGACCGAGCTGAAGGGGAACAATCAGAGAGCCACAGCTGATCATCTGAGCAGGAAC 245 consensus_503#1 AGGCTGACCGAGCTGAAGGGGAACAATCAGAGAGCCACAGCTGATCATCTGAGCAGGAAC 480 ************************************************************ consensus_503#0 AGCAGCCAAACTGGGTCTTTTGCAGACATGTCTCTGTCGGAGTTAGACAACAGTTTCCTG 305 consensus_503#1 AGCAGCCAAACTGG------------TGAGTCTTTATTCGACTAAAACTACACTTCAATA 528 ************** **** * * ** * * ** *** ** * consensus_503#0 TGTTATCCGCTGGAGGAGACCCTGGCAGCAGAGGTTGCACAGCACATAACTCTGAGTCTT 365 consensus_503#1 C----------------------------------------------------------- 529 consensus_503#0 CAGGAGGCCTCCTCCAGCCTGGGCTGCACCAAGCTCATCTTATCCGATCTTCTGCTCCGC 425 consensus_503#1 ------------------------------------------------------------ consensus_503#0 AACATCAGCCAAGAGCTGCTCCATCTGGCCTCCAATGAGCCCTGTGGTCTCAGGGGGGCG 485 consensus_503#1 ------------------------------------------------------------ consensus_503#0 CTGATCGACCTCTGTGTGGACAGGGTGGACCTGGGCTGCCTCTATGCTGTGGACCAAATA 545 consensus_503#1 ------------------------------------------------------------ consensus_503#0 GCAGTGGACCCCACGCTGGTCCCAACTTTTCAGGTGACCCTGGTACTGAGGCTAGATGCC 605 consensus_503#1 ------------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |