These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_67#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [ACCGACAGACAGATCAGCGAAGGAAGGTTCGGGGGATCTTTGCAGATGTAAACGTCCATAACTGGTAATCGAAGGCCAGTTAGGATCATAGTAATCCCATCCCGGGTGTCGCCCAGTGAGTAAATTTAACTTGGATTCTGCGAAAACGCCACAAGTCCAGCAGCAAAATGACAGCTGCAAGAGAAATGCGTTCATGATGCTAATTCATGCCGATCAGGATCGAGCTCTGGATTACCTCAGCACGTGTATCGACCAAGTTCACACTTTCGGGGACATTCTCCAGCTGGTCATTGTGGAGCTGATTTACAAAGTTTGCCATGCTAACCCCTCTGAACGGGCCCGCTTTATCCGATGCATCTACAACCTGTTGCAGTCCTCCAGCCCAGCGGTTAAATACGAAGCTGCGGGCACTCTTGTAACCCTGTCCAGTGCTCCCACAGCCATCAAGGCTGCAGCCCAGTGCTACATTGATTTGATCATCAAGGAGAGCGACAACAACGTGAGGCTGATCGTTCTCGACCGCCTGATAGAACTCAAGGAGCATCCCACTCATGAGCGTGTTCTCCAGGACCTGGTCATGGACATTCTGCGCGTGCTCAGCACCCCGGACCTCGAAGTAAGAAAGAAGACCTTG] [+] EMBL BU808594 [ACCGACAGACAGATCAGCGAAGGAAGGTTCGGGGGATCTTTGCAGATGTAAACGTCCATAACTGGTAATCGAAGGCCAGTTAGGATCATAGTAATCCCATCCCGGGTGTCGCCCAGTGAGTAAATTTAACTTGGATTCTGCGAAAACGCCACAAGTCCAGCAGCAAAATGACAGCTGCAAGAGAAATGCGTTCATGATGCTAATTCATGCCGATCAGGATCGAGCTCTGGATTACCTCAGCACGTGTATCGACCAAGTTCACACTTTCGGGGACATTCTCCAGCTGGTCATTGTGGAGCTGATTTACAAAGTTTGCCATGCTAACCCCTCTGAACGGGCCCGCTTTATCCGATGCATCTACAACCTGTTGCAGTCCTCCAGCCCAGCGGTTAAATACGAAGCTGCGGGCACTCTTGTAACCCTGTCCAGTGCTCCCACAGCCATCAAGGCTGCAGCCCAGTGCTACATTGATTTGATCATCAAGGAGAGCGACAACAACGTGAGGCTGATCGTTCTCGACCGCCTGATAGAACTCAAGGAGCATCCCACTCATGAGCGTGTTCTCCAGGACCTGGTCATGGACATTCTGCGCGTGCTCAGCACCCCGGACCTCGAAGTAAGAAAGAAGACCTTG] consensusID : consensus_67#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [AAGGCCAGTTAGGATCATAGTAATCCCATGGCCGGTGTCGCCCAGTGAGTAAATTTAACTTGGATTCTGCGAAAACGGCACAAGTCCAGCAGCAAAATGACAGCTGCAGAGAACGTTTGTTACACTCTGATCAATGTTACATCTGATTCAGAGCCTCCTTCCGAAGTCAGCCTGAAAACTGACTTGGAAAAGGGGGAAATCAAGGCAAAAACCGAAGCCCTGAAGAAGGTCATCATCATGATCCTAAATGGTGAAAAGTTGCCAGGGCTGCTGATGACCATAATTCGCTTCGTGCTGCCACTTCAGGACCACACCATCAAAAAGCTGCTGCTGGTTTCTGGGAGATTGTCCCCAAAACAACAACTGATGGTAAACTCCTTCAGGAGATGATCCTGGTCTGTGATGCCTACAGAAAGGACCTTCAGCATCCCAATGAGTTCATCCGT] [+] EMBL FR0061085 [AAGGCCAGTTAGGATCATAGTAATCCCATGGCCGGTGTCGCCCAGTGAGTAAATTTAACTTGGATTCTGCGAAAACGGCACAAGTCCAGCAGCAAAATGACAGCTGCAGAGAACGTTTGTTACACTCTGATCAATGTTACATCTGATTCAGAGCCTCCTTCCGAAGTCAGCCTGAAAACTGACTTGGAAAAGGGGGAAATCAAGGCAAAAACCGAAGCCCTGAAGAAGGTCATCATCATGATCCTAAATGGTGAAAAGTTGCCAGGGCTGCTGATGACCATAATTCGCTTCGTGCTGCCACTTCAGGACCACACCATCAAAAAGCTGCTGCTGGTTTCTGGGAGATTGTCCCCAAAACAACAACTGATGGTAAACTCCTTCAGGAGATGATCCTGGTCTGTGATGCCTACAGAAAGGACCTTCAGCATCCCAATGAGTTCATCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_67#0 ACCGACAGACAGATCAGCGAAGGAAGGTTCGGGGGATCTTTGCAGATGTAAACGTCCATA 60 consensus_67#1 ------------------------------------------------------------ consensus_67#0 ACTGGTAATCGAAGGCCAGTTAGGATCATAGTAATCCCATCCCGGGTGTCGCCCAGTGAG 120 consensus_67#1 -----------AAGGCCAGTTAGGATCATAGTAATCCCATGGCCGGTGTCGCCCAGTGAG 49 ***************************** * **************** consensus_67#0 TAAATTTAACTTGGATTCTGCGAAAACGCCACAAGTCCAGCAGCAAAATGACAGCTGCAA 180 consensus_67#1 TAAATTTAACTTGGATTCTGCGAAAACGGCACAAGTCCAGCAGCAAAATGACAGCTGCAG 109 **************************** ****************************** consensus_67#0 GAGAAATGCGTTCATGATGCTAATTCATGCCG-ATCAGGATCGAGCTCTGGATTACCTCA 239 consensus_67#1 AGAACGTTTGTTAC--ACTCTGATCAATGTTACATCTGATTCAGAGCCTC--CTTCCGAA 165 * * *** * ** ** *** *** * ** ** * ** * consensus_67#0 GCACGTGTATCGACCAAGTTCACACTTTCGGGGAC--ATTCTCCAGCTG--GTCATTGTG 295 consensus_67#1 GTCAGCCTGAAAACTGACTTGGAAAAGGGGGAAATCAAGGCAAAAACCGAAGCCCTGAAG 225 * * * ** * ** * ** * * * * * * * * * * consensus_67#0 GAGCTGATTTACAAAGTTTGCCATGCTAACCCCTCTGAACGGGCCCGCTTTATCCGATGC 355 consensus_67#1 AAGGTCATCATCATGATCCTAAATGGTGAAAAGTT--GCCAGGGCTGCTGATGACCATA- 282 ** * ** ** * *** * * * * ** * *** * ** consensus_67#0 ATCTACAACCTGTTGCAGTCCTCCAGCCCAGCGGTTAAATACGAAGCTGCGGGCACTCTT 415 consensus_67#1 ATTCGCTTCGTGCTGCCACTTCAGGACCACACCATCAAAAA-GCTGCTGCTGGTTTCTGG 341 ** * * ** *** ** * * *** * * ***** ** consensus_67#0 GTAACCCTGTCCAGTGCTCCCACAGCCATCAAGGCTGCAGCCCAGTGCTACATTGATTTG 475 consensus_67#1 GAGATTGTCCCCAAAACAACAACTGATGGTAAA-CTCCTTCAGGAGATGATCCTGGTCTG 400 * * * *** * * ** * ** ** * * * ** * ** consensus_67#0 --ATCATCAAGGAGAGCGACAACAACGTGAGGCTGATCGTTCTCGACCGCCTGATAGAAC 533 consensus_67#1 TGATGCCTACAGAAAGGACCTTCAGCAT----CCCAATGAGTTCATCCGT---------- 446 ** * ** ** * ** * * * * * ** *** consensus_67#0 TCAAGGAGCATCCCACTCATGAGCGTGTTCTCCAGGACCTGGTCATGGACATTCTGCGCG 593 consensus_67#1 ------------------------------------------------------------ consensus_67#0 TGCTCAGCACCCCGGACCTCGAAGTAAGAAAGAAGACCTTG 634 consensus_67#1 ----------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |