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Takifugu rubripes
cluster # 671 cluster # 671       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_671#0 length = 658 sequences # 1  
 consensus_671#1 length = 437 sequences # 1  
consensusID : consensus_671#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence 
                              [TCAGTGTCTGAGTAGAACCCAACCAAATGAAGGCAGAATTGGCCATCCAGCTGCTGAAGTTCTGCTTTCAGATTTTTAACTTCATCTTTTTGGTTCTGGGTGTCAGTGTTCTCTCATGTTCTCTGTGGATCCTGTTCAGCTCAGGACACCTACTGAATGTTCTACCTTCAGGTAACTCTGTTGTTGGTGTGACCGTTGCCATGACGACCGCAGGTGTTTTGCTCGATGGCGTTCAAGTGTTGTTTGGTTGATGAAGTTGATCAATCATCATGTAAATAAGCATTAACATCAACAATATGGTGGACATCAGAAAGACAACCTTCTACCATCTGTAGCATCATCAGACTGCTAACGATGGTAGCGTGTTGTTGTAGCTGTAGCTGACTGAAACAACATACCCGCGATGCAGCTAAAATAAAATGTTTTCATCGTCGCTGTGAGTCCAGATGAAGTTCGCATTGTGGGGACGGGGCTGCTGCTGATTGGTGGATTGGTGGTGCTGGTCAGCGTCCTGGGCAGCATCGGCGCTAACAGAGAGAAGGTTCTGCTCCTGATGATGTACCTGGGTCTGCTCATCGTGCTGGTCCTGGGTCAGCTCTTTATCACGCTGTTGCTGCTCATCAACAGAGACAAGGTGAGCATGCAAGCTAAGATGTGT]

[+] EMBL CA588374             [TCAGTGTCTGAGTAGAACCCAACCAAATGAAGGCAGAATTGGCCATCCAGCTGCTGAAGTTCTGCTTTCAGATTTTTAACTTCATCTTTTTGGTTCTGGGTGTCAGTGTTCTCTCATGTTCTCTGTGGATCCTGTTCAGCTCAGGACACCTACTGAATGTTCTACCTTCAGGTAACTCTGTTGTTGGTGTGACCGTTGCCATGACGACCGCAGGTGTTTTGCTCGATGGCGTTCAAGTGTTGTTTGGTTGATGAAGTTGATCAATCATCATGTAAATAAGCATTAACATCAACAATATGGTGGACATCAGAAAGACAACCTTCTACCATCTGTAGCATCATCAGACTGCTAACGATGGTAGCGTGTTGTTGTAGCTGTAGCTGACTGAAACAACATACCCGCGATGCAGCTAAAATAAAATGTTTTCATCGTCGCTGTGAGTCCAGATGAAGTTCGCATTGTGGGGACGGGGCTGCTGCTGATTGGTGGATTGGTGGTGCTGGTCAGCGTCCTGGGCAGCATCGGCGCTAACAGAGAGAAGGTTCTGCTCCTGATGATGTACCTGGGTCTGCTCATCGTGCTGGTCCTGGGTCAGCTCTTTATCACGCTGTTGCTGCTCATCAACAGAGACAAGGTGAGCATGCAAGCTAAGATGTGT]




>consensus_671#0
TCAGTGTCTGAGTAGAACCCAACCAAATGAAGGCAGAATTGGCCATCCAGCTGCTGAAGT
TCTGCTTTCAGATTTTTAACTTCATCTTTTTGGTTCTGGGTGTCAGTGTTCTCTCATGTT
CTCTGTGGATCCTGTTCAGCTCAGGACACCTACTGAATGTTCTACCTTCAGGTAACTCTG
TTGTTGGTGTGACCGTTGCCATGACGACCGCAGGTGTTTTGCTCGATGGCGTTCAAGTGT
TGTTTGGTTGATGAAGTTGATCAATCATCATGTAAATAAGCATTAACATCAACAATATGG
TGGACATCAGAAAGACAACCTTCTACCATCTGTAGCATCATCAGACTGCTAACGATGGTA
GCGTGTTGTTGTAGCTGTAGCTGACTGAAACAACATACCCGCGATGCAGCTAAAATAAAA
TGTTTTCATCGTCGCTGTGAGTCCAGATGAAGTTCGCATTGTGGGGACGGGGCTGCTGCT
GATTGGTGGATTGGTGGTGCTGGTCAGCGTCCTGGGCAGCATCGGCGCTAACAGAGAGAA
GGTTCTGCTCCTGATGATGTACCTGGGTCTGCTCATCGTGCTGGTCCTGGGTCAGCTCTT
TATCACGCTGTTGCTGCTCATCAACAGAGACAAGGTGAGCATGCAAGCTAAGATGTGT

consensusID : consensus_671#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence 
                              [CCAAATGAAGGCAGAATTGGCGATCCAGCTGCTGAAGTTCTGCTTTCAGATTTTTAACTTCATCTTTTTGGTTCTGGGTGTCAGTGTTCTCTCATGTTCTCTGTGGATCCTGTTCAGCTCAGGACACCTACTGAATGTTCTACCTTCAGATGAAGTTCGCATTGTGGGGACGGGGCTGCTGCTGATTGGTGGATTGGTGGTGCTGGTCAGCGTCCTAGGCAGCATCGGCGCTAACAGAGAGAAGGTTCTGCTCCTGATGATGTACCTGGGTCTGCTCATCGTGCTGGTCCTGGGTCAGCTCTTTATCACGCTGTTGCTGCTCATCAACAGAGACAAGATTGAACGCCGCGTGGATGACACAGTGGACCAACTGATCAGCCAGTATGACCCAGATGGAACCAGTCAGAACCACCTGCTGGACAGTGTTCAAAAACAGG]

[+] EMBL FR0056947            [CCAAATGAAGGCAGAATTGGCGATCCAGCTGCTGAAGTTCTGCTTTCAGATTTTTAACTTCATCTTTTTGGTTCTGGGTGTCAGTGTTCTCTCATGTTCTCTGTGGATCCTGTTCAGCTCAGGACACCTACTGAATGTTCTACCTTCAGATGAAGTTCGCATTGTGGGGACGGGGCTGCTGCTGATTGGTGGATTGGTGGTGCTGGTCAGCGTCCTAGGCAGCATCGGCGCTAACAGAGAGAAGGTTCTGCTCCTGATGATGTACCTGGGTCTGCTCATCGTGCTGGTCCTGGGTCAGCTCTTTATCACGCTGTTGCTGCTCATCAACAGAGACAAGATTGAACGCCGCGTGGATGACACAGTGGACCAACTGATCAGCCAGTATGACCCAGATGGAACCAGTCAGAACCACCTGCTGGACAGTGTTCAAAAACAGG]




>consensus_671#1
CCAAATGAAGGCAGAATTGGCGATCCAGCTGCTGAAGTTCTGCTTTCAGATTTTTAACTT
CATCTTTTTGGTTCTGGGTGTCAGTGTTCTCTCATGTTCTCTGTGGATCCTGTTCAGCTC
AGGACACCTACTGAATGTTCTACCTTCAGATGAAGTTCGCATTGTGGGGACGGGGCTGCT
GCTGATTGGTGGATTGGTGGTGCTGGTCAGCGTCCTAGGCAGCATCGGCGCTAACAGAGA
GAAGGTTCTGCTCCTGATGATGTACCTGGGTCTGCTCATCGTGCTGGTCCTGGGTCAGCT
CTTTATCACGCTGTTGCTGCTCATCAACAGAGACAAGATTGAACGCCGCGTGGATGACAC
AGTGGACCAACTGATCAGCCAGTATGACCCAGATGGAACCAGTCAGAACCACCTGCTGGA
CAGTGTTCAAAAACAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_671#0      TCAGTGTCTGAGTAGAACCCAACCAAATGAAGGCAGAATTGGCCATCCAGCTGCTGAAGT 60
consensus_671#1      ----------------------CCAAATGAAGGCAGAATTGGCGATCCAGCTGCTGAAGT 38
                                           ********************* ****************

consensus_671#0      TCTGCTTTCAGATTTTTAACTTCATCTTTTTGGTTCTGGGTGTCAGTGTTCTCTCATGTT 120
consensus_671#1      TCTGCTTTCAGATTTTTAACTTCATCTTTTTGGTTCTGGGTGTCAGTGTTCTCTCATGTT 98
                     ************************************************************

consensus_671#0      CTCTGTGGATCCTGTTCAGCTCAGGACACCTACTGAATGTTCTACCTTCAGGTAACTCTG 180
consensus_671#1      CTCTGTGGATCCTGTTCAGCTCAGGACACCTACTGAATGTTCTACCTTCAGATGAAGTTC 158
                     *************************************************** * *   * 

consensus_671#0      TTGTTGGTGTGACCG--TTGCCA-TGACGACCGCAGGTGTTTTGCTCGATGGCGTTC-AA 236
consensus_671#1      GCATTGTGGGGACGGGGCTGCTGCTGATTGGTGGATTGGTGGTGCTGGTCAGCGTCCTAG 218
                        ***  * *** *   ***   ***     * *   **  **** *   **** * * 

consensus_671#0      GTGTTGTTTG-GTTGATGAAGTTGATCAATCA-TCATGTAAATAAGCATTAACATCAACA 294
consensus_671#1      GCAGCATCGGCGCTAACAGAGAGAAGGTTCTGCTCCTGATGATGTACCTGGGTCTGCTCA 278
                     *     *  * * * *   **   *        ** **   **   * *     *   **

consensus_671#0      ATATGGTGGACATCAGAAAGACAACCTTCTACCAT-CTGTAGCATCATCAGACTGCTAAC 353
consensus_671#1      TCGTGCTGGTCCT----GGGTCAGCTCTTTATCACGCTGTTGCTGCTCATCAACAGAGAC 334
                        ** *** * *      * ** *  * ** **  **** **  *     *      **

consensus_671#0      GATGGTAGCGTGTTGTTGTAGCTGTAGCTGACTGAAACAACATACCCGCGA-TGCAGCTA 412
consensus_671#1      AA-GATTGAACGCCGC-GTGGATG--ACACAGTGGACCAACTGATCAGCCAGTATGACCC 390
                      * * * *   *  *  ** * **   *  * ** * ****  * * ** * *    *  

consensus_671#0      AAATAAAATGTTTTCATCGTCGCTGTGAGTCCAGATGAAGTTCGCATTGTGGGGACGGGG 472
consensus_671#1      AGATGGAAC-CAGTCAGAACCACC-TG---CTGGACAGTGTTCAAAAACAGG-------- 437
                     * **  **     ***    * *  **   *  **    ****  *    **        

consensus_671#0      CTGCTGCTGATTGGTGGATTGGTGGTGCTGGTCAGCGTCCTGGGCAGCATCGGCGCTAAC 532
consensus_671#1      ------------------------------------------------------------
                                                                                 

consensus_671#0      AGAGAGAAGGTTCTGCTCCTGATGATGTACCTGGGTCTGCTCATCGTGCTGGTCCTGGGT 592
consensus_671#1      ------------------------------------------------------------
                                                                                 

consensus_671#0      CAGCTCTTTATCACGCTGTTGCTGCTCATCAACAGAGACAAGGTGAGCATGCAAGCTAAG 652
consensus_671#1      ------------------------------------------------------------
                                                                                 

consensus_671#0      ATGTGT 658
consensus_671#1      ------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)