These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [AGTCGTCAGATTTTTCGTGATGGGAAACAAGCGGAAAGGGGGGCTGCCTGAAACTCTTTCCGTGTGACTCACCCCTGCACATTTCTAAAGGCGAAACTTAAGTTTTAATCGGGTTTTTTGTTTCAGCTCGGAGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTCAGCTGCTGGGCCTCCTCCTGACAGGTGCTTTGCTCAGCAAAGACAGGTTACAGCATGAAGGCATCTCATGGGGAACCACAGGCCTGCATGTCTATTTCTTAACCGCTGCATCTGACTGAATGTTTGACATGCCAGTTATTCAGCACTTGTATTTTAACAGACACATTATTGTGC] [+] EMBL FR0061379 [AGTCGTCAGATTTTTCGTGATGGGAAACAAGCGGAAAGGGGGGCTGCCTGAAACTCTTTCCGTGTGACTCACCCCTGCACATTTCTAAAGGCGAAACTTAAGTTTTAATCGGGTTTTTTGTTTCAGCTCGGAGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTCAGCTGCTGGGCCTCCTCCTGACAGGTGCTTTGCTCAGCAAAGACAGGTTACAGCATGAAGGCATCTCATGGGGAACCACAGGCCTGCATGTCTATTTCTTAACCGCTGCATCTGACTGAATGTTTGACATGCCAGTTATTCAGCACTTGTATTTTAACAGACACATTATTGTGC] consensusID : consensus_697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [AGGGCATGGGCAGAACGCCATGAAAGCTTCAGTGGCTCGCACCGACGGACGCTCACACAGCTCGGTGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTCAGCTGCTTGGCCTCCTCCTGACAGGTCAGGCCTCCTCTAATCACACCTCCACTACGCCGTCTCCTCTCGCCTCAACCACACATGTGCAGCCTCAAGCTACGTACTACTTTGTTGACATAACTGTGACCGCCGCTGTAAAGAAAAATGAATCTGAGATCAAGGCCCTGCTTCATGGAGGGCATTCCAAAAACAACCCTGGAGAGCTGCCCT] [+] EMBL FR0061138 [AGGGCATGGGCAGAACGCCATGAAAGCTTCAGTGGCTCGCACCGACGGACGCTCACACAGCTCGGTGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTCAGCTGCTTGGCCTCCTCCTGACAGGTCAGGCCTCCTCTAATCACACCTCCACTACGCCGTCTCCTCTCGCCTCAACCACACATGTGCAGCCTCAAGCTACGTACTACTTTGTTGACATAACTGTGACCGCCGCTGTAAAGAAAAATGAATCTGAGATCAAGGCCCTGCTTCATGGAGGGCATTCCAAAAACAACCCTGGAGAGCTGCCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_697#0 AGTCGTCAGATTTTTCGTGATGGGAAACAAGCGGAAAGGGGGGCTGCCTGAAACTCTTTC 60 consensus_697#1 ------------------------------------------------------------ consensus_697#0 CGTGTGACTCACCCCTGCACATTTCTAAAGGCGAAACTTAAGTTTTAATCGG-GTTTTTT 119 consensus_697#1 -------AGGGCATGGGCAGAACGCCATGAAAGCTTCAGTGGCTCGCACCGACGGACGCT 53 * *** * * * * * * * * ** * * consensus_697#0 GTTTCAGCTCGGAGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTC 179 consensus_697#1 CACACAGCTCGGTGAGGGAACCCTGGTCGCACATCAAACGTCTCCCCTGGTTGCACTTTC 113 ******** *********************************************** consensus_697#0 AGCTGCTGGGCCTCCTCCTGACAGGTG----CTTTGCTCAGCAAAGACAGGTTACAGCAT 235 consensus_697#1 AGCTGCTTGGCCTCCTCCTGACAGGTCAGGCCTCCTCTAATCACACCTCCACTACGCCGT 173 ******* ****************** ** ** * ** * *** * * consensus_697#0 GAA----------GGCATCTCATGGGGAACCACAGGCCTGCATGTCTATTTCTTAACC-- 283 consensus_697#1 CTCCTCTCGCCTCAACCACACATGTGCAGCCTCAAGC-TACGTACTACTTTGTTGACATA 232 * * **** * * ** ** ** * * * *** ** ** consensus_697#0 GCTGCATCTG--ACTG-AATGTTTGACATGCCAGTTATTCAGCACTTGTATTTTAACAGA 340 consensus_697#1 ACTGTGACCGCCGCTGTAAAGAAAAATGAATCTGAGATCAAGGCCCTGCTTCATGGAGGG 292 *** * * *** ** * * * * ** ** * ** * * * consensus_697#0 CACATTATTGTGC------------------ 353 consensus_697#1 CATTCCAAAAACAACCCTGGAGAGCTGCCCT 323 ** * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |