These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [AATGTGTGGAAATGAGCTGCTGGGCATAGACAAAATGAAATGCTGATGTGGTAAAAAACAACACAATGAACAAACCCAAAATGGCCGCAGAGAAAGGCGTTCCCAGTAACTCCAAAGTGGTGATGCTGCTGAGGCAACTGGAAAGGATGAACGGAGAGATGATGGCGAGGGACGTGAAAAATGCAAGACAGGTCACGGCAAAGATTCTCCATCTCATACAGACACAGGAGAAGAGTGGACAGGAGGTGATGTCTAAAGGCTCCAGAGGCATGGAGGTCATACTTTCTTCACTGGAGAACAGTCGGGATGTTCAGACTACTCTGAACATATTGTGCATTCTCAGTGAGTTACTAACTGTTGGCAGAGGTCGCAGGGTGGGAGTATTTGTCTCTATAGGTGGAACTGGGATATTATTCCACCTGTTGGTCACTGCCAGCAAGGAGACGATGCCCAGTGAGGAGCTCATGCTGCAGCTCCATTTGCTGCTGGCCAAGGTTGGCCCCAAAGACAGAAAGTTTGGCGTGAAGGCTCGGCTGAGCGGAGCTCTCAACGTCACTGCCAACTTAATCAAACAAAACCCGCATAATTCCAAACTGCTCTTGCCTTGCCTGCAGG] [+] EMBL CA590223 [AATGTGTGGAAATGAGCTGCTGGGCATAGACAAAATGAAATGCTGATGTGGTAAAAAACAACACAATGAACAAACCCAAAATGGCCGCAGAGAAAGGCGTTCCCAGTAACTCCAAAGTGGTGATGCTGCTGAGGCAACTGGAAAGGATGAACGGAGAGATGATGGCGAGGGACGTGAAAAATGCAAGACAGGTCACGGCAAAGATTCTCCATCTCATACAGACACAGGAGAAGAGTGGACAGGAGGTGATGTCTAAAGGCTCCAGAGGCATGGAGGTCATACTTTCTTCACTGGAGAACAGTCGGGATGTTCAGACTACTCTGAACATATTGTGCATTCTCAGTGAGTTACTAACTGTTGGCAGAGGTCGCAGGGTGGGAGTATTTGTCTCTATAGGTGGAACTGGGATATTATTCCACCTGTTGGTCACTGCCAGCAAGGAGACGATGCCCAGTGAGGAGCTCATGCTGCAGCTCCATTTGCTGCTGGCCAAGGTTGGCCCCAAAGACAGAAAGTTTGGCGTGAAGGCTCGGCTGAGCGGAGCTCTCAACGTCACTGCCAACTTAATCAAACAAAACCCGCATAATTCCAAACTGCTCTTGCCTTGCCTGCAGG] consensusID : consensus_858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [AAACAACACAATGAGCGAGCCCATTATGGCCGCAGATAAAGGCCCTCCCAGTAACTCCAAAGTGGTGATGCTGCTGAGGCAACTGGAAAGGATGAACGGAGAGATGATGGCGAGGGACGTGAAAAATGCAAGACAGGTCACGGCAAAGATCCTCCTTCTCCTCCTGTTCCTCTAGAACTAGACACCATCCACATGACCAAGGACCAAGCCAAAAAGACAGAGGCCTACATTCCTTCCAATGGGCAGATGACGGAACAGCAACTTTCAACTGTGTTGGAACACGTGTCTCTAGAGGATGGAAAAGGTCCACTCGCGGAAGGAGAAGTGAGGGATGGGAAACCGGAAGAGTGGCCGTTCAACACCACCAGACACATTCA] [+] EMBL FR0060927 [AAACAACACAATGAGCGAGCCCATTATGGCCGCAGATAAAGGCCCTCCCAGTAACTCCAAAGTGGTGATGCTGCTGAGGCAACTGGAAAGGATGAACGGAGAGATGATGGCGAGGGACGTGAAAAATGCAAGACAGGTCACGGCAAAGATCCTCCTTCTCCTCCTGTTCCTCTAGAACTAGACACCATCCACATGACCAAGGACCAAGCCAAAAAGACAGAGGCCTACATTCCTTCCAATGGGCAGATGACGGAACAGCAACTTTCAACTGTGTTGGAACACGTGTCTCTAGAGGATGGAAAAGGTCCACTCGCGGAAGGAGAAGTGAGGGATGGGAAACCGGAAGAGTGGCCGTTCAACACCACCAGACACATTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_858#0 AATGTGTGGAAATGAGCTGCTGGGCATAGACAAAATGAAATGCTGATGTGGTAAAAAACA 60 consensus_858#1 -------------------------------------------------------AAACA 5 ***** consensus_858#0 ACACAATGAACAAACCCAAAATGGCCGCAGAGAAAGGCGTTCCCAGTAACTCCAAAGTGG 120 consensus_858#1 ACACAATGAGCGAGCCCATTATGGCCGCAGATAAAGGCCCTCCCAGTAACTCCAAAGTGG 65 ********* * * **** *********** ****** ******************** consensus_858#0 TGATGCTGCTGAGGCAACTGGAAAGGATGAACGGAGAGATGATGGCGAGGGACGTGAAAA 180 consensus_858#1 TGATGCTGCTGAGGCAACTGGAAAGGATGAACGGAGAGATGATGGCGAGGGACGTGAAAA 125 ************************************************************ consensus_858#0 ATGCAAGACAGGTCACGGCAAAGATTCTCCATCTCATACAGACACAGGAGAAGAGTGGAC 240 consensus_858#1 ATGCAAGACAGGTCACGGCAAAGATCCTCCTTCTCCTCCTGTTCCTCTAGAA--CTAGAC 183 ************************* **** **** * * * * **** * *** consensus_858#0 AGGAGGTG-ATGTCTAAAGGCT---CCAGAGGCATGGAGGTC-ATACTTTCTTCACTGGA 295 consensus_858#1 ACCATCCACATGACCAAGGACCAAGCCAAAAAGACAGAGGCCTACATTCCTTCCAATGGG 243 * * *** * ** * * *** * * **** * * * * * ** *** consensus_858#0 GAACAGTCGGGATGTTCAGACTACTCTGAACATATTGTGCATTCTCAGTGAGTTACTAAC 355 consensus_858#1 CAGATGACGGAACA-----GCAACTTTCAAC----TGTGTTGGAACA-CGTGTCTCTAGA 293 * * *** * * *** * *** **** ** * ** *** consensus_858#0 TGTTGGCAGAGGTCGCAGGGTGGGAGTATTTGTCTCTATAGGTGGAACTGGGATATTATT 415 consensus_858#1 GGATGGAAAAGGTCCACTCGCGGAAGGAGAAGTGAGGG-ATGGGAAACCGGAAGAGT--- 349 * *** * ***** * ** ** * ** * * * *** ** * * * consensus_858#0 CCACCTGTTGGTCACTGCCAGCAAGGAGACGATGCCCAGTGAGGAGCTCATGCTGCAGCT 475 consensus_858#1 --GGCCGTTCAACACCACCAG-ACACATTCA----------------------------- 377 * *** *** **** * * * consensus_858#0 CCATTTGCTGCTGGCCAAGGTTGGCCCCAAAGACAGAAAGTTTGGCGTGAAGGCTCGGCT 535 consensus_858#1 ------------------------------------------------------------ consensus_858#0 GAGCGGAGCTCTCAACGTCACTGCCAACTTAATCAAACAAAACCCGCATAATTCCAAACT 595 consensus_858#1 ------------------------------------------------------------ consensus_858#0 GCTCTTGCCTTGCCTGCAGG 615 consensus_858#1 -------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |