These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_90#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [AGTCCGAAAAACGGTCTCCTATATTCAAAAACATTGTTTTACGTTGTAAAATTCAGCGTTCGTCTTGATGTCTGGTGCGAATGAAGATATTTTTGACAGCATTGTGGTAGCAGAAGAAAGTTTCCGAGGGGAAGGATACAGGGAGGGCTTTGACAGAGGGACCCATCTAGGACTGCAGGACGGACGCAGACATGGAGTCAGTCATGGCGCAAAGTTGTCCTCTGAGGTTTCCTTCTATTATGGGTTTGCTATCACATGGAAATGTCTACTCCAACTGAATAACGATGTGAAGTCAAGGAAGCATTTGAAAATCCTGGAGGCTTTTCTGGGCTTGATCCAAGGTTGTCCTCATGAAGATCAACCCGAAACACTAACAGAGGATATTAAAAAACTTCGTGCCAAGTTCAGACAGGTCTGCTCTATCCTGGGTGTTTCTAGCGACCTGAAAGCCTTCATGAAGATTTCTGAAGCAATGTCTTTTTGAAAACCTGAGATGATCTAAACTGATTCCTTGACCAAAAATAAATAAAAAGTAGGTGGATGAGCACCAGAAATACATCAGGATTTTTGCTTATTGCAAGTTACATCCAAGTAAGTCATTCTGCCCA] [+] EMBL CA591092 [AGTCCGAAAAACGGTCTCCTATATTCAAAAACATTGTTTTACGTTGTAAAATTCAGCGTTCGTCTTGATGTCTGGTGCGAATGAAGATATTTTTGACAGCATTGTGGTAGCAGAAGAAAGTTTCCGAGGGGAAGGATACAGGGAGGGCTTTGACAGAGGGACCCATCTAGGACTGCAGGACGGACGCAGACATGGAGTCAGTCATGGCGCAAAGTTGTCCTCTGAGGTTTCCTTCTATTATGGGTTTGCTATCACATGGAAATGTCTACTCCAACTGAATAACGATGTGAAGTCAAGGAAGCATTTGAAAATCCTGGAGGCTTTTCTGGGCTTGATCCAAGGTTGTCCTCATGAAGATCAACCCGAAACACTAACAGAGGATATTAAAAAACTTCGTGCCAAGTTCAGACAGGTCTGCTCTATCCTGGGTGTTTCTAGCGACCTGAAAGCCTTCATGAAGATTTCTGAAGCAATGTCTTTTTGAAAACCTGAGATGATCTAAACTGATTCCTTGACCAAAAATAAATAAAAAGTAGGTGGATGAGCACCAGAAATACATCAGGATTTTTGCTTATTGCAAGTTACATCCAAGTAAGTCATTCTGCCCA] consensusID : consensus_90#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [CCCCAGTACAGTTTTATTCATTTAAAGTTAACAGAATAAACAGCAATATCAAAGATGCTTAAAAGGACAAGTATGGTACAGTGAAACTGAATTCTTTTTGTCTTTTCAGCACTCTGCATGGTCATTAATTCCATTACAATTATGTAGCTCACTTTCAGGTTGTCCAAGCACCTGAGGGTCAGCAAACAGTAGCAGTTGAAGGAGATCGTAACAGCATCCTGTGCACATTCACTTATACACACAAGTTTACATAATCATGTACATTTTATGTGCACACTCGCATTGTTTCGTATTCATTGTCAGTTAGAACTAGAAAAATAACCCACCTCTACAGCCAAGCTCAGTGGGCAGAATGACTTACTTGGATGTAACTTGCAATAAGCAAAAAT] [+] EMBL CA329236 [CCCCAGTACAGTTTTATTCATTTAAAGTTAACAGAATAAACAGCAATATCAAAGATGCTTAAAAGGACAAGTATGGTACAGTGAAACTGAATTCTTTTTGTCTTTTCAGCACTCTGCATGGTCATTAATTCCATTACAATTATGTAGCTCACTTTCAGGTTGTCCAAGCACCTGAGGGTCAGCAAACAGTAGCAGTTGAAGGAGATCGTAACAGCATCCTGTGCACATTCACTTATACACACAAGTTTACATAATCATGTACATTTTATGTGCACACTCGCATTGTTTCGTATTCATTGTCAGTTAGAACTAGAAAAATAACCCACCTCTACAGCCAAGCTCAGTGGGCAGAATGACTTACTTGGATGTAACTTGCAATAAGCAAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_90#0 AGTCCGAAAAACGGTCTCCTATATTCAAAAACATTGTTTTACGTTGTAAAATTCAGCGTT 60 consensus_90#1 ------------------------------------------------------------ consensus_90#0 CGTCTTGATGTCTGGTGCGAATGAAGATATTTTTGACAGCATTGTGGTAGCAGAAGAAAG 120 consensus_90#1 ------------------------------------------------------------ consensus_90#0 TTTCCGAGGGGAAGGATACAGGGAGGGCTTTGACAGAGGGACCCATCTAGGACTGCAGGA 180 consensus_90#1 ------------------------------------------------------------ consensus_90#0 CGGACGCAGACATGGAGTCAGTCATGGCGCAAAGTTGTCCTCTGAGGTTTCCTTCTATTA 240 consensus_90#1 ------------------------------------CCCCAGTACAGTTTTATTCATTTA 24 ** * **** *** *** consensus_90#0 TGGGTTTGCTATCACATGGAAATGTCTACTCCAACTGAATAACGATGTGAAGTCAAGGAA 300 consensus_90#1 AAGTTAACAGAATAAACAGCAATATCAAAGATGCTTAAAAGGACAAGTATGGTACAGTGA 84 * * * * * * *** ** * * ** * ** ** ** * consensus_90#0 GCATTTGAAAATCCTGGAGGCTTTTCTGGGCTTGATCCAAGGTTGTCCTCATGAAGATCA 360 consensus_90#1 AACT---GAATTCTTTTTGTCTTTTCAGCACTC--TGCATGGTCATTAATTCCATTACAA 139 * ** ** * * ****** * ** * ** *** * * * * consensus_90#0 ACCCGAAACACTAACAGAGGATATTAAAAAACTTCGTGCCAAGTTCAGACAGGTCTGCTC 420 consensus_90#1 TTATGTAGCTCACTTTCAGGTTGTCCAAGCACCTGAGGGTCAG--CAAACAGTAGCAGTT 197 * * * * *** * * ** ** * * ** ** **** * consensus_90#0 TATCCTGGGTGTTTCTAGCGACCTGAAAGCCTTCATGAAGATTTCTGAAGCAATGTCTTT 480 consensus_90#1 GAAGGAGATCGTAAC-AGCATCCTGTGCACATTCACTTATACACACAAGTTTACATAATC 256 * * ** * *** **** * **** * * * * * * consensus_90#0 TTGAAAACCTGAGATG---ATCTAAACTGATTCCTTGACCAAAAATAAATAAAAAGTAGG 537 consensus_90#1 ATGTACATTTTATGTGCACACTCGCATTGTTTCGT--ATTCATTGTCAGTTAGAACTAGA 314 ** * * * * ** * * ** *** * * * * * * * ** *** consensus_90#0 TGGATGAGCACCAGAAATACATCAGGATTTTTGCTTATTGCAAGTTACATCCAAGTAAGT 597 consensus_90#1 AAAATAACCCACCTCTACA-GCCAAGCTCAGTGGGCAGAATGACTTACTTGGATGTAACT 373 ** * * * * * ** * * ** * * **** * * **** * consensus_90#0 CATTCTGCCCA----- 608 consensus_90#1 TGCAATAAGCAAAAAT 389 * ** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |