These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CCGGCCTGGGATGTGACTCTAGGGCCGCACGGAAAACTCAGACGAACCACAGAGACCAGAGTGTAACCAAAGAGCAAGAAAATCGATCCGGGTGGAATCAGCTGTACCTGCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCCTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCTGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCGTGGAGATCAAGACGGACTCGGACGAGGAAGAAGTGGACGAGCAAGAGGTGCTGGTGGAGGCGGGGAGCAGCCAGCTGGATGGCGACATGGACTCGGACCAGGCCGACTATGAGCCAGACGAGCGCCAGTACCGCTGCAGCTACTGCGGGAAGTGTTACAGCCACGCCTCCAGCCTGTACCGCCACCAGCAGACGCACAGTGGTAAAAGCAGCGGACTG] [+] EMBL CA591355 [CCGGCCTGGGATGTGACTCTAGGGCCGCACGGAAAACTCAGACGAACCACAGAGACCAGAGTGTAACCAAAGAGCAAGAAAATCGATCCGGGTGGAATCAGCTGTACCTGCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCCTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCTGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCGTGGAGATCAAGACGGACTCGGACGAGGAAGAAGTGGACGAGCAAGAGGTGCTGGTGGAGGCGGGGAGCAGCCAGCTGGATGGCGACATGGACTCGGACCAGGCCGACTATGAGCCAGACGAGCGCCAGTACCGCTGCAGCTACTGCGGGAAGTGTTACAGCCACGCCTCCAGCCTGTACCGCCACCAGCAGACGCACAGTGGTAAAAGCAGCGGACTG] consensusID : consensus_940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [CCCATCAAAATTCTGAGCTGTACCTCCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCTTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCCGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCGTGGAGAACAAG] [+] EMBL FR0060458 [CCCATCAAAATTCTGAGCTGTACCTCCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCTTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCCGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCGTGGAGAACAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_940#0 CCGGCCTGGGATGTGACTCTAGGGCCGCACGGAAAACTCAGACGAACCACAGAGACCAGA 60 consensus_940#1 ------------------------------------------------------------ consensus_940#0 GTGTAACCAAAGAGCAAGAAAATCGATCCGGGTGGAATCAGCTGTACCTGCTCTCAGTCA 120 consensus_940#1 ----------------------CCCATCAAAATTC--TGAGCTGTACCTCCTCTCAGTCA 36 * *** * * ********** ********** consensus_940#0 GGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACT 180 consensus_940#1 GGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACT 96 ************************************************************ consensus_940#0 TCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTG 240 consensus_940#1 TCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTG 156 ************************************************************ consensus_940#0 GGTCCAAATTCACTATTTCCTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTG 300 consensus_940#1 GGTCCAAATTCACTATTTCTTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTG 216 ******************* **************************************** consensus_940#0 CTGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTTGCACCCTATGAAGAAGTCTAC 360 consensus_940#1 CCGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTT-GCACCCTATGAAGAAGTCTAC 275 * ************************************ ********************* consensus_940#0 CCCTGCGAGGTGACCGAGCAAAGCGTGGAGATCAAGACGGACTCGGACGAGGAAGAAGTG 420 consensus_940#1 CCCTGCGAGGTGACCGAGCAAAGCGTGGAGAACAAG------------------------ 311 ******************************* **** consensus_940#0 GACGAGCAAGAGGTGCTGGTGGAGGCGGGGAGCAGCCAGCTGGATGGCGACATGGACTCG 480 consensus_940#1 ------------------------------------------------------------ consensus_940#0 GACCAGGCCGACTATGAGCCAGACGAGCGCCAGTACCGCTGCAGCTACTGCGGGAAGTGT 540 consensus_940#1 ------------------------------------------------------------ consensus_940#0 TACAGCCACGCCTCCAGCCTGTACCGCCACCAGCAGACGCACAGTGGTAAAAGCAGCGGA 600 consensus_940#1 ------------------------------------------------------------ consensus_940#0 CTG 603 consensus_940#1 --- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |