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Takifugu rubripes
cluster # 940 cluster # 940       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_940#0 length = 603 sequences # 1  
consensus_940#1 length = 311 sequences # 1  

consensusID : consensus_940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence
                              [CCGGCCTGGGATGTGACTCTAGGGCCGCACGGAAAACTCAGACGAACCACAGAGACCAGAGTGTAACCAAAGAGCAAGAAAATCGATCCGGGTGGAATCAGCTGTACCTGCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCCTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCTGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCGTGGAGATCAAGACGGACTCGGACGAGGAAGAAGTGGACGAGCAAGAGGTGCTGGTGGAGGCGGGGAGCAGCCAGCTGGATGGCGACATGGACTCGGACCAGGCCGACTATGAGCCAGACGAGCGCCAGTACCGCTGCAGCTACTGCGGGAAGTGTTACAGCCACGCCTCCAGCCTGTACCGCCACCAGCAGACGCACAGTGGTAAAAGCAGCGGACTG]

[+] EMBL CA591355             [CCGGCCTGGGATGTGACTCTAGGGCCGCACGGAAAACTCAGACGAACCACAGAGACCAGAGTGTAACCAAAGAGCAAGAAAATCGATCCGGGTGGAATCAGCTGTACCTGCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCCTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCTGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCGTGGAGATCAAGACGGACTCGGACGAGGAAGAAGTGGACGAGCAAGAGGTGCTGGTGGAGGCGGGGAGCAGCCAGCTGGATGGCGACATGGACTCGGACCAGGCCGACTATGAGCCAGACGAGCGCCAGTACCGCTGCAGCTACTGCGGGAAGTGTTACAGCCACGCCTCCAGCCTGTACCGCCACCAGCAGACGCACAGTGGTAAAAGCAGCGGACTG]


>consensus_940#0 CCGGCCTGGGATGTGACTCTAGGGCCGCACGGAAAACTCAGACGAACCACAGAGACCAGA GTGTAACCAAAGAGCAAGAAAATCGATCCGGGTGGAATCAGCTGTACCTGCTCTCAGTCA GGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACT TCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTG GGTCCAAATTCACTATTTCCTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTG CTGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTTGCACCCTATGAAGAAGTCTAC CCCTGCGAGGTGACCGAGCAAAGCGTGGAGATCAAGACGGACTCGGACGAGGAAGAAGTG GACGAGCAAGAGGTGCTGGTGGAGGCGGGGAGCAGCCAGCTGGATGGCGACATGGACTCG GACCAGGCCGACTATGAGCCAGACGAGCGCCAGTACCGCTGCAGCTACTGCGGGAAGTGT TACAGCCACGCCTCCAGCCTGTACCGCCACCAGCAGACGCACAGTGGTAAAAGCAGCGGA CTG



consensusID : consensus_940#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence
                              [CCCATCAAAATTCTGAGCTGTACCTCCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCTTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCCGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCGTGGAGAACAAG]

[+] EMBL FR0060458            [CCCATCAAAATTCTGAGCTGTACCTCCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCTTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCCGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCGTGGAGAACAAG]


>consensus_940#1 CCCATCAAAATTCTGAGCTGTACCTCCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGC TAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACAC AACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCTTGCG TGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCCGACCAGCTGAAGATCGAGGCGG ACGAGGCGTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCG TGGAGAACAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_940#0      CCGGCCTGGGATGTGACTCTAGGGCCGCACGGAAAACTCAGACGAACCACAGAGACCAGA 60
consensus_940#1      ------------------------------------------------------------
                                                                                 

consensus_940#0      GTGTAACCAAAGAGCAAGAAAATCGATCCGGGTGGAATCAGCTGTACCTGCTCTCAGTCA 120
consensus_940#1      ----------------------CCCATCAAAATTC--TGAGCTGTACCTCCTCTCAGTCA 36
                                            * ***    *    * ********** **********

consensus_940#0      GGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACT 180
consensus_940#1      GGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACT 96
                     ************************************************************

consensus_940#0      TCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTG 240
consensus_940#1      TCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTG 156
                     ************************************************************

consensus_940#0      GGTCCAAATTCACTATTTCCTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTG 300
consensus_940#1      GGTCCAAATTCACTATTTCTTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTG 216
                     ******************* ****************************************

consensus_940#0      CTGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTTGCACCCTATGAAGAAGTCTAC 360
consensus_940#1      CCGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTT-GCACCCTATGAAGAAGTCTAC 275
                     * ************************************ *********************

consensus_940#0      CCCTGCGAGGTGACCGAGCAAAGCGTGGAGATCAAGACGGACTCGGACGAGGAAGAAGTG 420
consensus_940#1      CCCTGCGAGGTGACCGAGCAAAGCGTGGAGAACAAG------------------------ 311
                     ******************************* ****                        

consensus_940#0      GACGAGCAAGAGGTGCTGGTGGAGGCGGGGAGCAGCCAGCTGGATGGCGACATGGACTCG 480
consensus_940#1      ------------------------------------------------------------
                                                                                 

consensus_940#0      GACCAGGCCGACTATGAGCCAGACGAGCGCCAGTACCGCTGCAGCTACTGCGGGAAGTGT 540
consensus_940#1      ------------------------------------------------------------
                                                                                 

consensus_940#0      TACAGCCACGCCTCCAGCCTGTACCGCCACCAGCAGACGCACAGTGGTAAAAGCAGCGGA 600
consensus_940#1      ------------------------------------------------------------
                                                                                 

consensus_940#0      CTG 603
consensus_940#1      ---
                        




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)