cluster # 950

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Takifugu rubripes
cluster # 950 cluster # 950 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_950#0 length = 343 sequences # 1

consensus_950#1 length = 215 sequences # 1

consensusID : consensus_950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [GGACAATATAAATGTGCACAGAAACACGTAAAACGTGTCCTGCATGAGTAGTAAAGGGCCTTGCAACGCACAGGCTTTCCACCAGAGGGCGGTGTTGGTAGGCAGGCCCCTTTAGATGGCGTGTGTAAACCTACCTCCTCCTGTTGTGGTTATATTAAAACCTCATGTAGAAAGTTAACACTGCTTGCTTAAGAAGACCGCTACAAGATTCAGAACTTTTCCTTAAATATTTGCTGTGCCTTTGTTACTGCTCTACTTTCCTTTTCTTCTGCAACGAAATAAAATGTCTATACTCGGAGGTGGATTGTGTGTGTGTGTGTGTGTACATAAATCTATTAAAAAG]

[+] EMBL FR0057644            [GGACAATATAAATGTGCACAGAAACACGTAAAACGTGTCCTGCATGAGTAGTAAAGGGCCTTGCAACGCACAGGCTTTCCACCAGAGGGCGGTGTTGGTAGGCAGGCCCCTTTAGATGGCGTGTGTAAACCTACCTCCTCCTGTTGTGGTTATATTAAAACCTCATGTAGAAAGTTAACACTGCTTGCTTAAGAAGACCGCTACAAGATTCAGAACTTTTCCTTAAATATTTGCTGTGCCTTTGTTACTGCTCTACTTTCCTTTTCTTCTGCAACGAAATAAAATGTCTATACTCGGAGGTGGATTGTGTGTGTGTGTGTGTGTACATAAATCTATTAAAAAG]




>consensus_950#0
GGACAATATAAATGTGCACAGAAACACGTAAAACGTGTCCTGCATGAGTAGTAAAGGGCC
TTGCAACGCACAGGCTTTCCACCAGAGGGCGGTGTTGGTAGGCAGGCCCCTTTAGATGGC
GTGTGTAAACCTACCTCCTCCTGTTGTGGTTATATTAAAACCTCATGTAGAAAGTTAACA
CTGCTTGCTTAAGAAGACCGCTACAAGATTCAGAACTTTTCCTTAAATATTTGCTGTGCC
TTTGTTACTGCTCTACTTTCCTTTTCTTCTGCAACGAAATAAAATGTCTATACTCGGAGG
TGGATTGTGTGTGTGTGTGTGTGTACATAAATCTATTAAAAAG

consensusID : consensus_950#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence

                              [GACAGAATTTGTGTGTTTGTGGAAATTCATTTCAACATGGTCTTTAATGGTGAAACTCATTTCTCCACAGCCACTTTTAGACATATTCAATAATTTGAACTTGCAAGTCAGGCATTGTTTAGTTGATCAAGGGGCTTTCGAACCAGTTTGAATGAAAGATTCGGGCAATATTTTCCAAATTGGACAATATAAATGTGCACAGAAACACGTAAAAC]

[+] EMBL FR0058090            [GACAGAATTTGTGTGTTTGTGGAAATTCATTTCAACATGGTCTTTAATGGTGAAACTCATTTCTCCACAGCCACTTTTAGACATATTCAATAATTTGAACTTGCAAGTCAGGCATTGTTTAGTTGATCAAGGGGCTTTCGAACCAGTTTGAATGAAAGATTCGGGCAATATTTTCCAAATTGGACAATATAAATGTGCACAGAAACACGTAAAAC]




>consensus_950#1
GACAGAATTTGTGTGTTTGTGGAAATTCATTTCAACATGGTCTTTAATGGTGAAACTCAT
TTCTCCACAGCCACTTTTAGACATATTCAATAATTTGAACTTGCAAGTCAGGCATTGTTT
AGTTGATCAAGGGGCTTTCGAACCAGTTTGAATGAAAGATTCGGGCAATATTTTCCAAAT
TGGACAATATAAATGTGCACAGAAACACGTAAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_950#0      GGACAATATAAATGTGCACAGAAACACGTAAAACGTGTCCTGCATGAGTAGTAAAGGGCC 60
consensus_950#1      ------------------------------------------------------------
                                                                                 

consensus_950#0      TTGCAACGCACAGGCTTTCCACCAGAGGGCGGTGTTGGTAGGCAGGCCCCTTTAGATGGC 120
consensus_950#1      ------------------------------------------------------------
                                                                                 

consensus_950#0      GTGTGTAAACCTACCTCCTCCTGTTGTGGTTAT--ATTAAAACCTCATGTAGAAAGTTAA 178
consensus_950#1      -------GACAGAATTTGTGTGTTTGTGGAAATTCATTTCAACATGGTCTTTAATGGTGA 53
                             **  *  *  *    ******  **  ***  *** *  * *  ** * * *

consensus_950#0      CACTGCTTGCTTAAGAAG-ACCGCTACA-AGATTCAG-AACTTTTCCTTAAATATTTGCT 235
consensus_950#1      AACTCATTTCTCCACAGCCACTTTTAGACATATTCAATAATTTGAACTTGCAAGTCAGGC 113
                      ***  ** **  * *   **   ** * * *****  ** **   ***  *  *  *  

consensus_950#0      GTGCCTTTGTTACTGCTCTACTTTCCTTTTCTTCTGCAACGAAATAAAATGTCTATACTC 295
consensus_950#1      ATTGTTTAGTTGATCAAGGGGCTTTCGAACCAGTTTGAATGAAAGATTCGGGCAATATTT 173
                      *   ** ***  *        ** *    *   *  ** **** *    * * *** * 

consensus_950#0      GGAGGTGGATTGTGTGTGTGTGTGTGTGTACATAAATCTATTAAAAAG 343
consensus_950#1      TC---CAAATTGGACA-ATATAAATGTGCACAGAAACACGTAAAAC-- 215
                             ****      * *   **** *** ***    * ***

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)