Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 988 cluster # 988       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_988#0 length = 579 sequences # 1  
consensus_988#1 length = 268 sequences # 1  

consensusID : consensus_988#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence
                              [AACCAGACGTTGCCAAAGAAGACTATGGCGTGGTGGGTAACAAATTCATGTTTTATTAGTAGTGCATTTGCAATGCGACGTTTGATACTATTTTGTTTCGTCTCAAAGCTTGTCAAGATGGAAAACCCGTACAAAGAACCCCAAAAAGGATGCCTCCTCTGTGACGTGACAGTGGACTACAAAAACATTCAGGTGAGCCTGGTACCTGTAGTTCTTCAGGAGTACCAGGTTTACTGTTCTATTTAGGATTCTAATTAATTAACACCATTATATCACGTGTTTTCTTCACAGAACCTCACCTTTATTCATTTTCAGATAGCATTTTGTCTTAAGCTGCTGTCTTCCACTCACCATCCTTACATGTAGTAACACACCTGTCTCCTCCCCAGCTCCTTTCCCAGTTTATCTCACCTCACACTGGACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTGAGTTTTGTATTGAAGTAGTTCAATGCAAAATGTATACTGACTTTATGTCTTTTTTTAAATTTAGAATTT]

[+] EMBL CA844865             [AACCAGACGTTGCCAAAGAAGACTATGGCGTGGTGGGTAACAAATTCATGTTTTATTAGTAGTGCATTTGCAATGCGACGTTTGATACTATTTTGTTTCGTCTCAAAGCTTGTCAAGATGGAAAACCCGTACAAAGAACCCCAAAAAGGATGCCTCCTCTGTGACGTGACAGTGGACTACAAAAACATTCAGGTGAGCCTGGTACCTGTAGTTCTTCAGGAGTACCAGGTTTACTGTTCTATTTAGGATTCTAATTAATTAACACCATTATATCACGTGTTTTCTTCACAGAACCTCACCTTTATTCATTTTCAGATAGCATTTTGTCTTAAGCTGCTGTCTTCCACTCACCATCCTTACATGTAGTAACACACCTGTCTCCTCCCCAGCTCCTTTCCCAGTTTATCTCACCTCACACTGGACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTGAGTTTTGTATTGAAGTAGTTCAATGCAAAATGTATACTGACTTTATGTCTTTTTTTAAATTTAGAATTT]


>consensus_988#0 AACCAGACGTTGCCAAAGAAGACTATGGCGTGGTGGGTAACAAATTCATGTTTTATTAGT AGTGCATTTGCAATGCGACGTTTGATACTATTTTGTTTCGTCTCAAAGCTTGTCAAGATG GAAAACCCGTACAAAGAACCCCAAAAAGGATGCCTCCTCTGTGACGTGACAGTGGACTAC AAAAACATTCAGGTGAGCCTGGTACCTGTAGTTCTTCAGGAGTACCAGGTTTACTGTTCT ATTTAGGATTCTAATTAATTAACACCATTATATCACGTGTTTTCTTCACAGAACCTCACC TTTATTCATTTTCAGATAGCATTTTGTCTTAAGCTGCTGTCTTCCACTCACCATCCTTAC ATGTAGTAACACACCTGTCTCCTCCCCAGCTCCTTTCCCAGTTTATCTCACCTCACACTG GACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCA AAGCAATAAAGAAAGCTCAATCAATGGGTGAGTTTTGTATTGAAGTAGTTCAATGCAAAA TGTATACTGACTTTATGTCTTTTTTTAAATTTAGAATTT



consensusID : consensus_988#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 268
fasta sequence
                              [AACCCCATCCTTTTAAACTCCTCTGTAGCGTGACAGNGGACTACAAAAACATTCAGCTCCTTTCCCAGTTTATCTCACCTCACACTTTACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTTTTATGTCAGTTACTCACAAGCATCCCCAGTTCATGAGAGACCCCAATATTTGTGCTGTCAAACAGCTGAATTAGTATTTTTCTTGTTCAAT]

[+] EMBL CA846487             [AACCCCATCCTTTTAAACTCCTCTGTAGCGTGACAGNGGACTACAAAAACATTCAGCTCCTTTCCCAGTTTATCTCACCTCACACTTTACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTTTTATGTCAGTTACTCACAAGCATCCCCAGTTCATGAGAGACCCCAATATTTGTGCTGTCAAACAGCTGAATTAGTATTTTTCTTGTTCAAT]


>consensus_988#1 AACCCCATCCTTTTAAACTCCTCTGTAGCGTGACAGNGGACTACAAAAACATTCAGCTCC TTTCCCAGTTTATCTCACCTCACACTTTACACATCTATGCCCGACATTTCACAGGTCTTT GTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTTTTA TGTCAGTTACTCACAAGCATCCCCAGTTCATGAGAGACCCCAATATTTGTGCTGTCAAAC AGCTGAATTAGTATTTTTCTTGTTCAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_988#0      AACCAGACGTTGCCAAAGAAGACTATGGCGTGGTGGGTAACAAATTCATGTTTTATTAGT 60
consensus_988#1      ------------------------------------------------------------
                                                                                 

consensus_988#0      AGTGCATTTGCAATGCGACGTTTGATACTATTTTGTTTCGTCTCAAAGCTTGTCAAGATG 120
consensus_988#1      ------------------------------------------------------------
                                                                                 

consensus_988#0      GAAAACCCGTACAAAGAACCCCAAAAAGGATGCCTCCTCTGTGACGTGACAGTGGACTAC 180
consensus_988#1      ------------------------------------------------------------
                                                                                 

consensus_988#0      AAAAACATTCAGGTGAGCCTGGTACCTGTAGTTCTTCAGGAGTACCAGGTTTACTGTTCT 240
consensus_988#1      ------------------------------------------------------------
                                                                                 

consensus_988#0      ATTTAGGATTCTAATTAATTAACACCATTATATCACGTGTTTTCTTCACAGAACCTCACC 300
consensus_988#1      ------------------------------------------------------------
                                                                                 

consensus_988#0      TTTATTCATTTTCAGATAGCATTTTGTCTTAAGCTGCTGTCTTCCACTCACCATCCTTAC 360
consensus_988#1      -------------------------------AACCCCATCCTTTTAAACTCC-TCTGTA- 27
                                                    * *  *   ***  *  * ** **  ** 

consensus_988#0      ATGTAGTAACACACCTGTCTCCTCCCCAGCTCCTTTCCCAGTTTATCTCACCTCACACTG 420
consensus_988#1      GCGTGACAGNGGACTACAAAAACATTCAGCTCCTTTCCCAGTTTATCTCACCTCACACTT 87
                       **   *    **            ********************************* 

consensus_988#0      GACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCA 480
consensus_988#1      TACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCA 147
                      ***********************************************************

consensus_988#0      AAGCAATAAAGAAAGCTCAATCAATGGGTGAGTTTTGTATTG-----AAGTAGTTC-AAT 534
consensus_988#1      AAGCAATAAAGAAAGCTCAATCAATGGGTTTTATGTCAGTTACTCACAAGCATCCCCAGT 207
                     *****************************    * *   **      *** *   * * *

consensus_988#0      GCAAAATGTATACTGAC-TTTATGTCTTTTTTTAAAT---TTAGAATTT----------- 579
consensus_988#1      TCATGAGAGACCCCAATATTTGTGCTGTCAAACAGCTGAATTAGTATTTTTCTTGTTCAA 267
                      **  *   *  *  *  *** **   *     *  *   **** ****           

consensus_988#0      -
consensus_988#1      T 268
                      




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)