These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [AACCAGACGTTGCCAAAGAAGACTATGGCGTGGTGGGTAACAAATTCATGTTTTATTAGTAGTGCATTTGCAATGCGACGTTTGATACTATTTTGTTTCGTCTCAAAGCTTGTCAAGATGGAAAACCCGTACAAAGAACCCCAAAAAGGATGCCTCCTCTGTGACGTGACAGTGGACTACAAAAACATTCAGGTGAGCCTGGTACCTGTAGTTCTTCAGGAGTACCAGGTTTACTGTTCTATTTAGGATTCTAATTAATTAACACCATTATATCACGTGTTTTCTTCACAGAACCTCACCTTTATTCATTTTCAGATAGCATTTTGTCTTAAGCTGCTGTCTTCCACTCACCATCCTTACATGTAGTAACACACCTGTCTCCTCCCCAGCTCCTTTCCCAGTTTATCTCACCTCACACTGGACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTGAGTTTTGTATTGAAGTAGTTCAATGCAAAATGTATACTGACTTTATGTCTTTTTTTAAATTTAGAATTT] [+] EMBL CA844865 [AACCAGACGTTGCCAAAGAAGACTATGGCGTGGTGGGTAACAAATTCATGTTTTATTAGTAGTGCATTTGCAATGCGACGTTTGATACTATTTTGTTTCGTCTCAAAGCTTGTCAAGATGGAAAACCCGTACAAAGAACCCCAAAAAGGATGCCTCCTCTGTGACGTGACAGTGGACTACAAAAACATTCAGGTGAGCCTGGTACCTGTAGTTCTTCAGGAGTACCAGGTTTACTGTTCTATTTAGGATTCTAATTAATTAACACCATTATATCACGTGTTTTCTTCACAGAACCTCACCTTTATTCATTTTCAGATAGCATTTTGTCTTAAGCTGCTGTCTTCCACTCACCATCCTTACATGTAGTAACACACCTGTCTCCTCCCCAGCTCCTTTCCCAGTTTATCTCACCTCACACTGGACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTGAGTTTTGTATTGAAGTAGTTCAATGCAAAATGTATACTGACTTTATGTCTTTTTTTAAATTTAGAATTT] consensusID : consensus_988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence [AACCCCATCCTTTTAAACTCCTCTGTAGCGTGACAGNGGACTACAAAAACATTCAGCTCCTTTCCCAGTTTATCTCACCTCACACTTTACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTTTTATGTCAGTTACTCACAAGCATCCCCAGTTCATGAGAGACCCCAATATTTGTGCTGTCAAACAGCTGAATTAGTATTTTTCTTGTTCAAT] [+] EMBL CA846487 [AACCCCATCCTTTTAAACTCCTCTGTAGCGTGACAGNGGACTACAAAAACATTCAGCTCCTTTCCCAGTTTATCTCACCTCACACTTTACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTTTTATGTCAGTTACTCACAAGCATCCCCAGTTCATGAGAGACCCCAATATTTGTGCTGTCAAACAGCTGAATTAGTATTTTTCTTGTTCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_988#0 AACCAGACGTTGCCAAAGAAGACTATGGCGTGGTGGGTAACAAATTCATGTTTTATTAGT 60 consensus_988#1 ------------------------------------------------------------ consensus_988#0 AGTGCATTTGCAATGCGACGTTTGATACTATTTTGTTTCGTCTCAAAGCTTGTCAAGATG 120 consensus_988#1 ------------------------------------------------------------ consensus_988#0 GAAAACCCGTACAAAGAACCCCAAAAAGGATGCCTCCTCTGTGACGTGACAGTGGACTAC 180 consensus_988#1 ------------------------------------------------------------ consensus_988#0 AAAAACATTCAGGTGAGCCTGGTACCTGTAGTTCTTCAGGAGTACCAGGTTTACTGTTCT 240 consensus_988#1 ------------------------------------------------------------ consensus_988#0 ATTTAGGATTCTAATTAATTAACACCATTATATCACGTGTTTTCTTCACAGAACCTCACC 300 consensus_988#1 ------------------------------------------------------------ consensus_988#0 TTTATTCATTTTCAGATAGCATTTTGTCTTAAGCTGCTGTCTTCCACTCACCATCCTTAC 360 consensus_988#1 -------------------------------AACCCCATCCTTTTAAACTCC-TCTGTA- 27 * * * *** * * ** ** ** consensus_988#0 ATGTAGTAACACACCTGTCTCCTCCCCAGCTCCTTTCCCAGTTTATCTCACCTCACACTG 420 consensus_988#1 GCGTGACAGNGGACTACAAAAACATTCAGCTCCTTTCCCAGTTTATCTCACCTCACACTT 87 ** * ** ********************************* consensus_988#0 GACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCA 480 consensus_988#1 TACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCA 147 *********************************************************** consensus_988#0 AAGCAATAAAGAAAGCTCAATCAATGGGTGAGTTTTGTATTG-----AAGTAGTTC-AAT 534 consensus_988#1 AAGCAATAAAGAAAGCTCAATCAATGGGTTTTATGTCAGTTACTCACAAGCATCCCCAGT 207 ***************************** * * ** *** * * * * consensus_988#0 GCAAAATGTATACTGAC-TTTATGTCTTTTTTTAAAT---TTAGAATTT----------- 579 consensus_988#1 TCATGAGAGACCCCAATATTTGTGCTGTCAAACAGCTGAATTAGTATTTTTCTTGTTCAA 267 ** * * * * *** ** * * * **** **** consensus_988#0 - consensus_988#1 T 268 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |