BioWish: a molecular biology command extension to Tcl/Tk
Thomas Sicheritz-Pontén
Written in Tcl/Tk
Application note
Download Biowish
Test: download all 3 files and run wish testrun
test file
test sequence
test features
Mail Author
scripts using biowish:
- nextorf.tcl extract ORF's from an
(multiple) nucleotide FASTA file
Usage: nextorf.tcl -help
- pair_align.tcl
pairwise alignment via clustalw and calculates %identidy
Usage: pair_align.tcl -help
- multrans.tcl
translation of multiple nucleotide FASTA file
Usage: multrans.tcl
- embl_merge.tcl
merges all entries from an EMBL or genbank file
Usage: embl_merge.tcl -help
- multi_fasta_gc.tcl
calculates G+C content for all nulceotide sequences in a FASTA file
Usage: multi_fasta_gc.tcl
Usage: nextorf.tcl -help
Usage: pair_align.tcl -help
Usage: multrans.tcl
Usage: embl_merge.tcl -help
Usage: multi_fasta_gc.tcl