BioCocoa : To Do

To Do

Main.ToDo History

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August 12, 2006, at 12:07 PM by Koen -

Changed lines 8-9 from:

Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keys throughout the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta).

to:

Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keys throughout the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta). See also this discussion on the mailinglist.

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August 12, 2006, at 11:48 AM by Koen -

Changed lines 8-9 from:

Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keyss throught the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta).

to:

Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keys throughout the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta).

Changed lines 15-16 from:

to:

Make the SequenceConverter and EntrezViewer examples work with BCSequence

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August 12, 2006, at 11:28 AM by Koen -

Changed lines 3-4 from:

to:

Set goals for future releases

Added line 6:

Changed lines 8-9 from:

Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively.

to:

Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keyss throught the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta).

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August 09, 2006, at 02:20 PM by koen -

Deleted line 1:

Prepare for new release

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August 07, 2006, at 08:34 PM by Koen -

Changed line 2 from:

Prepare for new release (2.0)

to:

Prepare for new release

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August 01, 2006, at 09:00 PM by Koen - Re-organized todo list

Added lines 1-4:

Organization:

Prepare for new release (2.0)
Recruit new developers

Deleted lines 5-6:

Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
Update the test code to reflect the new BCSequence and NSData structure

Changed lines 7-8 from:

Work on nested and multi-lined annotations in some of the sequence formats

to:

Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively.

Changed lines 10-16 from:

Fix compiler warnings

Organization:

Work towards a new release (2.0)
Update docs about using Subversion instead of cvs
Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
Move more docs, etc to the wiki

to:

Update the test code to reflect the new BCSequence and NSData structure
Work on nested and multi-lined annotations in some of the sequence formats

Restore

August 01, 2006, at 09:12 AM by 65.205.158.138 -

Deleted line 3:

Fix translation code (check the Translation demo to see what's going wrong)

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April 25, 2006, at 08:17 AM by Koen -

Deleted lines 0-1:

This is a todo list for the BioCocoa project:

Added line 11:

Work towards a new release (2.0)

Deleted line 13:

Work towards a new release

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April 23, 2006, at 10:58 AM by koen -

Changed line 3 from:

Code:

to:

Code:

Changed line 12 from:

Organization:

to:

Organization:

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April 19, 2006, at 09:05 AM by Koen -

Changed line 5 from:

Update the test code to reflect the new BCSequence/NSData structure

to:

Update the test code to reflect the new BCSequence and NSData structure

Restore

April 18, 2006, at 02:25 PM by Koen -

Changed lines 3-16 from:

Code:
- Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
- Update the test code to reflect the new BCSequence/NSData structure
- Fix translation code (check the Translation demo to see what's going wrong)
- Implement a mutable sequence class
- Work on nested and multi-lined annotations in some of the sequence formats
- Extend use of BCFeature and BCAnnotation classes
- Fix compiler warnings
Organization:
- Update docs about using Subversion instead of cvs
- Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
- Work towards a new release
- Move more docs, etc to the wiki

to:

Code:

Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
Update the test code to reflect the new BCSequence/NSData structure
Fix translation code (check the Translation demo to see what's going wrong)
Implement a mutable sequence class
Work on nested and multi-lined annotations in some of the sequence formats
Extend use of BCFeature and BCAnnotation classes
Fix compiler warnings

Organization:

Update docs about using Subversion instead of cvs
Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
Work towards a new release
Move more docs, etc to the wiki

Restore

April 18, 2006, at 02:18 PM by Koen -

Changed lines 3-12 from:

Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
Convert the Test classes to use BCSequence instead of BCSequenceDNA, etc
Fix translation code
Fix compiler warnings
Implement a mutable sequence class
Update docs about using Subversion instead of SVN
Update HeaderDoc entries
Work on nested and multi-lined annotations in some of the sequence formats
Work towards a new release
Move more docs, etc to the wiki

to:

Code:
- Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
- Update the test code to reflect the new BCSequence/NSData structure
- Fix translation code (check the Translation demo to see what's going wrong)
- Implement a mutable sequence class
- Work on nested and multi-lined annotations in some of the sequence formats
- Extend use of BCFeature and BCAnnotation classes
- Fix compiler warnings
Organization:
- Update docs about using Subversion instead of cvs
- Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
- Work towards a new release
- Move more docs, etc to the wiki

Restore

April 12, 2006, at 08:50 AM by Koen -

Added lines 6-7:

Fix compiler warnings
Implement a mutable sequence class

Changed line 9 from:

Update HeaderDoc entries

to:

Update HeaderDoc entries

Changed lines 11-12 from:

Work towards a new release

to:

Work towards a new release
Move more docs, etc to the wiki

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April 11, 2006, at 09:00 PM by koen -

Changed line 7 from:

Update 'HeaderDoc entries

to:

Update HeaderDoc entries

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April 11, 2006, at 10:55 AM by Koen -

Changed lines 3-5 from:

Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively.
Convert the Test classes to use BCSequence instead of BCSequenceDNA, etc.
Work towards a new release.

to:

Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
Convert the Test classes to use BCSequence instead of BCSequenceDNA, etc
Fix translation code
Update docs about using Subversion instead of SVN
Update 'HeaderDoc entries
Work on nested and multi-lined annotations in some of the sequence formats
Work towards a new release

Restore

April 10, 2006, at 01:27 PM by Koen -

Added lines 1-5:

This is a todo list for the BioCocoa project:

Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively.
Convert the Test classes to use BCSequence instead of BCSequenceDNA, etc.
Work towards a new release.

Restore