BioCocoa : To Do

August 12, 2006, at 12:07 PM by Koen -

Changed lines 8-9 from:

* Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keys throughout the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta).

to:

* Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keys throughout the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta). See also this [[http://bioinformatics.org/pipermail/biococoa-dev/2005-February/000783.html | discussion]] on the mailinglist.

August 07, 2006, at 08:34 PM by Koen -

Changed line 2 from:

* Prepare for new release (2.0)

to:

* Prepare for new release

August 01, 2006, at 09:00 PM by Koen - Re-organized todo list

Added lines 1-4:

!!!!!Organization:
* Prepare for new release (2.0)
* Recruit new developers

Deleted lines 5-6:

* Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
* Update the test code to reflect the new BCSequence and NSData structure

Changed lines 7-8 from:

* Work on nested and multi-lined annotations in some of the sequence formats

to:

* Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively.
----

Changed lines 10-16 from:

* Fix compiler warnings

!!!!!Organization:
* Work towards a new release (2.0)
* Update docs about using Subversion instead of cvs
* Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
* Move more docs, etc to the wiki

to:

* Update the test code to reflect the new BCSequence and NSData structure
* Work on nested and multi-lined annotations in some of the sequence formats
----

August 01, 2006, at 09:12 AM by 65.205.158.138 -

Deleted line 3:

* Fix translation code (check the Translation demo to see what's going wrong)

April 18, 2006, at 02:25 PM by Koen -

Changed lines 3-16 from:

* Code:
** Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
** Update the test code to reflect the new BCSequence/NSData structure
** Fix translation code (check the Translation demo to see what's going wrong)
** Implement a mutable sequence class
** Work on nested and multi-lined annotations in some of the sequence formats
** Extend use of BCFeature and BCAnnotation classes
** Fix compiler warnings

* Organization:
** Update docs about using Subversion instead of cvs
** Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
** Work towards a new release
** Move more docs, etc to the wiki

to:

!!!!Code:
* Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
* Update the test code to reflect the new BCSequence/NSData structure
* Fix translation code (check the Translation demo to see what's going wrong)
* Implement a mutable sequence class
* Work on nested and multi-lined annotations in some of the sequence formats
* Extend use of BCFeature and BCAnnotation classes
* Fix compiler warnings

!!!!Organization:
* Update docs about using Subversion instead of cvs
* Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
* Work towards a new release
* Move more docs, etc to the wiki

April 18, 2006, at 02:18 PM by Koen -

Changed lines 3-12 from:

* Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
* Convert the Test classes to use BCSequence instead of BCSequenceDNA, etc
* Fix translation code
* Fix compiler warnings
* Implement a mutable sequence class
* Update docs about using Subversion instead of SVN
* Update HeaderDoc entries
* Work on nested and multi-lined annotations in some of the sequence formats
* Work towards a new release
* Move more docs, etc to the wiki

to:

* Code:
** Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
** Update the test code to reflect the new BCSequence/NSData structure
** Fix translation code (check the Translation demo to see what's going wrong)
** Implement a mutable sequence class
** Work on nested and multi-lined annotations in some of the sequence formats
** Extend use of BCFeature and BCAnnotation classes
** Fix compiler warnings

* Organization:
** Update docs about using Subversion instead of cvs
** Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
** Work towards a new release
** Move more docs, etc to the wiki

April 11, 2006, at 09:00 PM by koen -

Changed line 7 from:

* Update 'HeaderDoc entries

to:

* Update `HeaderDoc entries

April 10, 2006, at 01:27 PM by Koen -

Added lines 1-5:

This is a todo list for the BioCocoa project:

* Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively.
* Convert the Test classes to use BCSequence instead of BCSequenceDNA, etc.
* Work towards a new release.

Main.ToDo History