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August 12, 2006, at 12:07 PM by Koen -
Changed lines 8-9 from:
* Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keys throughout the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta).
to:
* Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keys throughout the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta). See also this [[http://bioinformatics.org/pipermail/biococoa-dev/2005-February/000783.html | discussion]] on the mailinglist.
August 12, 2006, at 11:48 AM by Koen -
Changed lines 8-9 from:
* Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keyss throught the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta).
to:
* Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keys throughout the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta).
Changed lines 15-16 from:
to:
* Make the SequenceConverter and EntrezViewer examples work with BCSequence
August 12, 2006, at 11:28 AM by Koen -
Changed lines 3-4 from:
to:
* Set goals for future releases
Added line 6:
Changed lines 8-9 from:
* Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively.
to:
* Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively. This requires that we harmonize the annotation keyss throught the framework. For instance, we should always use @"ID", for a sequence identifier, even though another identifier is used for a particular sequence format (eg '>' for fasta).
Added line 11:
Added line 15:
August 09, 2006, at 02:20 PM by koen -
Deleted line 1:
* Prepare for new release
August 07, 2006, at 08:34 PM by Koen -
Changed line 2 from:
* Prepare for new release (2.0)
to:
* Prepare for new release
August 01, 2006, at 09:00 PM by Koen - Re-organized todo list
Added lines 1-4:
!!!!!Organization:
* Prepare for new release (2.0)
* Recruit new developers
Deleted lines 5-6:
* Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
* Update the test code to reflect the new BCSequence and NSData structure
Changed lines 7-8 from:
* Work on nested and multi-lined annotations in some of the sequence formats
to:
* Continue transforming BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively.
----
Changed lines 10-16 from:
* Fix compiler warnings

!!!!!Organization:
* Work towards a new release (2.0)
* Update docs about using Subversion instead of cvs
* Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
* Move more docs, etc to the wiki
to:
* Update the test code to reflect the new BCSequence and NSData structure
* Work on nested and multi-lined annotations in some of the sequence formats
----
August 01, 2006, at 09:12 AM by 65.205.158.138 -
Deleted line 3:
* Fix translation code (check the Translation demo to see what's going wrong)
April 25, 2006, at 08:17 AM by Koen -
Deleted lines 0-1:
This is a todo list for the BioCocoa project:
Added line 11:
* Work towards a new release (2.0)
Deleted line 13:
* Work towards a new release
April 23, 2006, at 10:58 AM by koen -
Changed line 3 from:
!!!!Code:
to:
!!!!!Code:
Changed line 12 from:
!!!!Organization:
to:
!!!!!Organization:
April 19, 2006, at 09:05 AM by Koen -
Changed line 5 from:
* Update the test code to reflect the new BCSequence/NSData structure
to:
* Update the test code to reflect the new BCSequence and NSData structure
April 18, 2006, at 02:25 PM by Koen -
Changed lines 3-16 from:
* Code:
** Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
** Update the test code to reflect the new BCSequence/NSData structure
** Fix translation code (check the Translation demo to see what's going wrong)
** Implement a mutable sequence class
** Work on nested and multi-lined annotations in some of the sequence formats
** Extend use of BCFeature and BCAnnotation classes
** Fix compiler warnings

* Organization:
** Update docs about using Subversion instead of cvs
** Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
** Work towards a new release
** Move more docs, etc to the wiki
to:
!!!!Code:
* Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
* Update the test code to reflect the new BCSequence/NSData structure
* Fix translation code (check the Translation demo to see what's going wrong)
* Implement a mutable sequence class
* Work on nested and multi-lined annotations in some of the sequence formats
* Extend use of BCFeature and BCAnnotation classes
* Fix compiler warnings

!!!!Organization:
* Update docs about using Subversion instead of cvs
* Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
* Work towards a new release
* Move more docs, etc to the wiki
April 18, 2006, at 02:18 PM by Koen -
Changed lines 3-12 from:
* Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
* Convert the Test classes to use BCSequence instead of BCSequenceDNA, etc
* Fix translation code
* Fix compiler warnings
* Implement a mutable sequence class
* Update docs about using Subversion instead of SVN
* Update HeaderDoc entries
* Work on nested and multi-lined annotations in some of the sequence formats
* Work towards a new release
* Move more docs, etc to the wiki
to:
* Code:
** Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
** Update the test code to reflect the new BCSequence/NSData structure
** Fix translation code (check the Translation demo to see what's going wrong)
** Implement a mutable sequence class
** Work on nested and multi-lined annotations in some of the sequence formats
** Extend use of BCFeature and BCAnnotation classes
** Fix compiler warnings

* Organization:
** Update docs about using Subversion instead of cvs
** Update the documentation and headerdoc entries to reflect the new BCSequence/NSData structure
** Work towards a new release
** Move more docs, etc to the wiki
April 12, 2006, at 08:50 AM by Koen -
Added lines 6-7:
* Fix compiler warnings
* Implement a mutable sequence class
Changed line 9 from:
* Update `HeaderDoc entries
to:
* Update HeaderDoc entries
Changed lines 11-12 from:
* Work towards a new release
to:
* Work towards a new release
* Move more docs, etc to the wiki
April 11, 2006, at 09:00 PM by koen -
Changed line 7 from:
* Update 'HeaderDoc entries
to:
* Update `HeaderDoc entries
April 11, 2006, at 10:55 AM by Koen -
Changed lines 3-5 from:
* Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively.
* Convert the Test classes to use BCSequence instead of BCSequenceDNA, etc.
* Work towards a new release.
to:
* Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively
* Convert the Test classes to use BCSequence instead of BCSequenceDNA, etc
* Fix translation code
* Update docs about using Subversion instead of SVN
* Update 'HeaderDoc entries
* Work on nested and multi-lined annotations in some of the sequence formats
* Work towards a new release
April 10, 2006, at 01:27 PM by Koen -
Added lines 1-5:
This is a todo list for the BioCocoa project:

* Transform BCReader and BCWriter to BCSequenceReader and BCSequenceWriter, respectively.
* Convert the Test classes to use BCSequence instead of BCSequenceDNA, etc.
* Work towards a new release.


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