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Revision 350 - Directory Listing
Modified Wed Aug 19 16:45:07 2015 UTC (4 years, 7 months ago) by schristley
MPI timing
Revision 349 - Directory Listing
Modified Tue Mar 31 18:33:37 2015 UTC (5 years ago) by schristley
new pairwise ScEM algorithm, tweaks for float precisions errors
Revision 348 - Directory Listing
Modified Fri Mar 20 19:45:20 2015 UTC (5 years ago) by schristley
bounds check, float precision tweak
Revision 347 - Directory Listing
Modified Tue Mar 17 21:06:35 2015 UTC (5 years ago) by schristley
more 3D MPI
Revision 346 - Directory Listing
Modified Mon Mar 16 18:58:49 2015 UTC (5 years ago) by schristley
initial 3D MPI work
Revision 345 - Directory Listing
Modified Mon Mar 16 17:19:47 2015 UTC (5 years ago) by schristley
change readOnlySectorBorder to a flag
Revision 344 - Directory Listing
Modified Tue Mar 3 19:56:46 2015 UTC (5 years, 1 month ago) by schristley
working MPI ScEM code
Revision 343 - Directory Listing
Modified Tue Feb 24 17:34:57 2015 UTC (5 years, 1 month ago) by schristley
MPI init and F1 with gather and scatter
Revision 342 - Directory Listing
Modified Thu Feb 19 17:49:35 2015 UTC (5 years, 1 month ago) by schristley
working gather and MPI communication
Revision 341 - Directory Listing
Modified Thu Feb 12 22:10:36 2015 UTC (5 years, 1 month ago) by schristley
add MPI code generator
Revision 340 - Directory Listing
Modified Wed Feb 11 21:39:45 2015 UTC (5 years, 1 month ago) by schristley
some initial MPI work
Revision 339 - Directory Listing
Modified Fri Feb 6 17:23:19 2015 UTC (5 years, 2 months ago) by schristley
add -initializeFileCompleted
Revision 338 - Directory Listing
Modified Tue Feb 3 22:58:07 2015 UTC (5 years, 2 months ago) by schristley
read only sector border
Revision 337 - Directory Listing
Modified Mon Feb 2 19:29:39 2015 UTC (5 years, 2 months ago) by schristley
sector border
Revision 336 - Directory Listing
Modified Fri Jan 30 20:53:30 2015 UTC (5 years, 2 months ago) by schristley
coordinate translation for MPI
Revision 335 - Directory Listing
Modified Thu Dec 4 18:33:39 2014 UTC (5 years, 4 months ago) by schristley
initial MPI controller
Revision 334 - Directory Listing
Modified Tue Dec 2 18:22:46 2014 UTC (5 years, 4 months ago) by schristley
interface model
Revision 332 - Directory Listing
Modified Fri Oct 24 18:37:34 2014 UTC (5 years, 5 months ago) by schristley
new sector-based GPU algorithm for ScEM
Revision 330 - Directory Listing
Modified Wed Jun 25 18:12:28 2014 UTC (5 years, 9 months ago) by schristley
rework SEM code, add mesh SEM
Revision 324 - Directory Listing
Modified Fri Sep 6 20:16:47 2013 UTC (6 years, 7 months ago) by schristley
bug fixes
Revision 322 - Directory Listing
Modified Fri Jun 28 15:19:47 2013 UTC (6 years, 9 months ago) by schristley
fix 64bit NSNotFound bug
Revision 321 - Directory Listing
Modified Fri Jun 28 15:17:55 2013 UTC (6 years, 9 months ago) by schristley
use -1 as NSNotFound could be positive number
Revision 320 - Directory Listing
Modified Fri Jun 28 15:16:24 2013 UTC (6 years, 9 months ago) by schristley
fix 64bit bug
Revision 319 - Directory Listing
Modified Thu Jun 27 19:51:06 2013 UTC (6 years, 9 months ago) by schristley
error prediction
Revision 296 - Directory Listing
Modified Fri May 3 15:44:03 2013 UTC (6 years, 11 months ago) by schristley
import Foundation instead of Cocoa
Revision 295 - Directory Listing
Modified Fri May 3 15:42:32 2013 UTC (6 years, 11 months ago) by schristley
clean up use of NSUInteger and other compiler warnings
Revision 293 - Directory Listing
Modified Wed May 1 18:19:40 2013 UTC (6 years, 11 months ago) by schristley
64bit bug fix
Revision 291 - Directory Listing
Modified Tue Apr 23 20:28:25 2013 UTC (6 years, 11 months ago) by schristley
minimum dt
Revision 289 - Directory Listing
Modified Fri Apr 19 16:31:23 2013 UTC (6 years, 11 months ago) by schristley
add support for double precision on GPU
Revision 288 - Directory Listing
Modified Fri Apr 19 16:17:50 2013 UTC (6 years, 11 months ago) by schristley
fix compiler errors
Revision 287 - Directory Listing
Modified Fri Apr 5 15:45:23 2013 UTC (7 years ago) by schristley
glpk for flux balance
Revision 286 - Directory Listing
Modified Wed Apr 3 18:28:49 2013 UTC (7 years ago) by schristley
bug fix, add knockout, initial glpk code
Revision 285 - Directory Listing
Modified Tue Apr 2 22:25:01 2013 UTC (7 years ago) by schristley
error checking
Revision 282 - Directory Listing
Modified Tue Mar 5 19:20:02 2013 UTC (7 years, 1 month ago) by schristley
access to data handler, use correct respondsToSelector: method
Revision 280 - Directory Listing
Modified Mon Mar 4 21:36:56 2013 UTC (7 years, 1 month ago) by schristley
remove old code, initial support for ReactionStructureMCMC and DiffusionModel, move encodings from Grid2DArray into BioSwarm Model
Revision 278 - Directory Listing
Modified Wed Dec 12 22:31:42 2012 UTC (7 years, 3 months ago) by schristley
updates for new model interface
Revision 276 - Directory Listing
Modified Thu Oct 11 19:48:51 2012 UTC (7 years, 5 months ago) by schristley
set gpu device
Revision 275 - Directory Listing
Modified Wed Oct 3 18:18:29 2012 UTC (7 years, 6 months ago) by schristley
GNUstep fixes
Revision 274 - Directory Listing
Modified Wed Oct 3 18:17:34 2012 UTC (7 years, 6 months ago) by schristley
fix memory leak
Revision 273 - Directory Listing
Modified Wed Oct 3 16:34:13 2012 UTC (7 years, 6 months ago) by schristley
clear event schedule, allow perturbation of parameter
Revision 271 - Directory Listing
Modified Fri Sep 28 16:27:09 2012 UTC (7 years, 6 months ago) by schristley
initial MathML support, move data encode and species into generic BioSwarmModel
Revision 270 - Directory Listing
Modified Fri Sep 28 16:23:47 2012 UTC (7 years, 6 months ago) by schristley
fix compare with speciesMap
Revision 269 - Directory Listing
Modified Fri Sep 28 16:20:30 2012 UTC (7 years, 6 months ago) by schristley
add support for range
Revision 268 - Directory Listing
Modified Fri Sep 28 16:18:56 2012 UTC (7 years, 6 months ago) by schristley
fix bug
Revision 264 - Directory Listing
Modified Wed Jul 11 17:10:52 2012 UTC (7 years, 8 months ago) by schristley
cleanup hierarchy API, add simulation events, aggregate population model
Revision 263 - Directory Listing
Modified Mon Jul 2 16:31:34 2012 UTC (7 years, 9 months ago) by schristley
element center forces, povray settings
Revision 262 - Directory Listing
Modified Wed Jun 20 20:12:09 2012 UTC (7 years, 9 months ago) by schristley
multiple model support for ScEM
Revision 261 - Directory Listing
Modified Thu Jun 14 16:00:51 2012 UTC (7 years, 9 months ago) by schristley
support for initialization file, multiple forces between element types in ScEM
Revision 260 - Directory Listing
Modified Wed Jun 6 19:25:27 2012 UTC (7 years, 10 months ago) by schristley
initialization file and update povray code generation
Revision 259 - Directory Listing
Modified Wed May 30 16:32:24 2012 UTC (7 years, 10 months ago) by schristley
update SEM for hierarchical model
Revision 258 - Directory Listing
Modified Wed May 23 21:05:27 2012 UTC (7 years, 10 months ago) by schristley
fixes for hierarchical model
Revision 257 - Directory Listing
Modified Wed May 23 19:14:58 2012 UTC (7 years, 10 months ago) by schristley
MCMC reworked for hierarchical model
Revision 256 - Directory Listing
Modified Wed May 23 15:29:47 2012 UTC (7 years, 10 months ago) by schristley
ES reworked for hierarchical model
Revision 255 - Directory Listing
Modified Fri May 11 19:42:36 2012 UTC (7 years, 10 months ago) by schristley
multiple experiments
Revision 254 - Directory Listing
Modified Wed May 9 17:47:31 2012 UTC (7 years, 11 months ago) by schristley
disable swarm for gnustep
Revision 253 - Directory Listing
Modified Mon May 7 16:12:06 2012 UTC (7 years, 11 months ago) by schristley
record final data
Revision 252 - Directory Listing
Modified Thu May 3 16:46:08 2012 UTC (7 years, 11 months ago) by schristley
add data handler to MCMC
Revision 251 - Directory Listing
Modified Mon Apr 23 20:39:02 2012 UTC (7 years, 11 months ago) by schristley
initial integration with Swarm
Revision 250 - Directory Listing
Modified Fri Mar 16 16:22:48 2012 UTC (8 years ago) by schristley
add 2D ScEM
Revision 249 - Directory Listing
Modified Fri Mar 9 23:12:57 2012 UTC (8 years, 1 month ago) by schristley
prevent double close of file
Revision 248 - Directory Listing
Modified Fri Mar 9 22:38:19 2012 UTC (8 years, 1 month ago) by schristley
fix bug
Revision 247 - Directory Listing
Modified Fri Mar 9 22:31:09 2012 UTC (8 years, 1 month ago) by schristley
put time calculation on GPU
Revision 246 - Directory Listing
Modified Fri Mar 9 15:35:02 2012 UTC (8 years, 1 month ago) by schristley
initial adaptive runge kutta fehlberg
Revision 245 - Directory Listing
Modified Wed Mar 7 20:39:14 2012 UTC (8 years, 1 month ago) by schristley
update subcellular element method
Revision 244 - Directory Listing
Modified Mon Mar 5 16:35:39 2012 UTC (8 years, 1 month ago) by schristley
update for GNUstep
Revision 243 - Directory Listing
Modified Fri Mar 2 21:26:52 2012 UTC (8 years, 1 month ago) by schristley
dynamic reaction rule model
Revision 242 - Directory Listing
Modified Wed Feb 29 21:49:11 2012 UTC (8 years, 1 month ago) by schristley
pass in both start and end time for invoke
Revision 241 - Directory Listing
Modified Wed Feb 29 17:42:32 2012 UTC (8 years, 1 month ago) by schristley
initial data handler support
Revision 240 - Directory Listing
Modified Fri Feb 24 21:21:13 2012 UTC (8 years, 1 month ago) by schristley
initial perturbation support
Revision 239 - Directory Listing
Modified Tue Feb 21 22:47:54 2012 UTC (8 years, 1 month ago) by schristley
modularize RK kernels, change time to actual time versus iterations
Revision 238 - Directory Listing
Modified Wed Feb 15 17:16:54 2012 UTC (8 years, 1 month ago) by schristley
add shared parameters
Revision 237 - Directory Listing
Modified Wed Feb 8 19:42:04 2012 UTC (8 years, 2 months ago) by schristley
better validation of parameter lists
Revision 236 - Directory Listing
Modified Mon Jan 30 18:28:21 2012 UTC (8 years, 2 months ago) by schristley
fix bug
Revision 235 - Directory Listing
Modified Fri Jan 27 20:01:55 2012 UTC (8 years, 2 months ago) by schristley
equilibration warm up runs for evolutionary strategy
Revision 234 - Directory Listing
Modified Fri Jan 27 20:01:04 2012 UTC (8 years, 2 months ago) by schristley
fix method names
Revision 233 - Directory Listing
Modified Fri Jan 20 19:54:55 2012 UTC (8 years, 2 months ago) by schristley
update build on GNUstep
Revision 232 - Directory Listing
Modified Fri Jan 20 19:53:53 2012 UTC (8 years, 2 months ago) by schristley
support for setting GPU device
Revision 231 - Directory Listing
Modified Fri Jan 20 19:46:28 2012 UTC (8 years, 2 months ago) by schristley
flag for initial random
Revision 230 - Directory Listing
Modified Fri Jan 20 19:45:10 2012 UTC (8 years, 2 months ago) by schristley
use newer API
Revision 229 - Directory Listing
Modified Fri Jan 20 19:44:17 2012 UTC (8 years, 2 months ago) by schristley
bug fix
Revision 226 - Directory Listing
Modified Tue Oct 25 20:48:01 2011 UTC (8 years, 5 months ago) by schristley
sequential monte carlo
Revision 214 - Directory Listing
Modified Mon Oct 3 19:03:52 2011 UTC (8 years, 6 months ago) by schristley
basic MCMC implementation
Revision 211 - Directory Listing
Modified Mon Sep 19 19:11:42 2011 UTC (8 years, 6 months ago) by schristley
rework evolutionary strategy
Revision 208 - Directory Listing
Modified Thu Sep 8 20:53:05 2011 UTC (8 years, 7 months ago) by schristley
enhancements to reaction rule model
Revision 207 - Directory Listing
Modified Wed Jul 27 21:23:31 2011 UTC (8 years, 8 months ago) by schristley
initial CMA, new ReactionRuleModel, enhance SimulationController
Revision 206 - Directory Listing
Modified Wed Jun 15 17:20:44 2011 UTC (8 years, 9 months ago) by schristley
dynamic structure GPU for ReactionModel
Revision 205 - Directory Listing
Modified Tue Jun 14 21:09:52 2011 UTC (8 years, 9 months ago) by schristley
bring ReactionModel up-to-date, implement gene levels for flux balance
Revision 192 - Directory Listing
Added Tue Mar 1 20:48:29 2011 UTC (9 years, 1 month ago) by schristley
inital version of BioSwarm